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Effect of the L-D1 alleles on leaf morphology, canopy structure and photosynthetic productivity in upland cotton (Gossypium hirsutum L.)
JIANG Hui, GAO Ming-wei, CHEN Ying, ZHANG Chao, WANG Jia-bao, CHAI Qi-chao, WANG Yong-cui, ZHENG Jin-xiu, WANG Xiu-li, ZHAO Jun-sheng
2023, 22 (1): 108-119.   DOI: 10.1016/j.jia.2022.08.099
Abstract169)      PDF in ScienceDirect      

One of the most important objectives for breeders is to develop high-yield cultivars.  The increase in crop yield has met with bottlenecks after the first green revolution, and more recent efforts have been focusing on achieving high photosynthetic efficiency traits in order to enhance the yield.  Leaf shape is a significant agronomic trait of upland cotton that affects plant and canopy architecture, yield, and other production attributes.  The major leaf shape types, including normal, sub-okra, okra, and super-okra, with varying levels of lobe severity, are controlled by a multiple allelic series of the D-genome locus L-D1.  To analyze the effects of L-D1 alleles on leaf morphology, photosynthetic related traits and yield of cotton, two sets of near isogenic lines (NILs) with different alleles were constructed in Lumianyan 22 (LMY22) and Lumianyan 28 (LMY28) backgrounds.  The analysis of morphological parameters and the results of virus-induced gene silencing (VIGS) showed that the regulation of leaf shape by L-D1 alleles was similar to a gene-dosage effect.  Compared with the normal leaf, deeper lobes of the sub-okra leaf improved plant canopy structure by decreasing the leaf area index (LAI) and increasing the light transmittance rate (LTR), and the mid-range LAI of sub-okra leaf also guaranteed the accumulation of cotton biomass.  Although the chlorophyll content (SPAD) of sub-okra leaf was lower than those of the other two leaf shapes, the net photosynthetic rate (Pn) of sub-okra leaf was higher than those of okra leaf and normal leaf at most stages.  Thus, the improvements in canopy structure, as well as photosynthetic and physiological characteristics, contributed to optimizing the light environment, thereby increasing the total biomass and yield in the lines with a sub-okra leaf shape.  Our results suggest that the sub-okra leaf may have practical application in cultivating varieties, and could enhance sustainable and profitable cotton production.

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Soil temperature estimation at different depths, using remotely-sensed data
HUANG Ran, HUANG Jian-xi, ZHANG Chao, MA Hong-yuan, ZHUO Wen, CHEN Ying-yi, ZHU De-hai, Qingling WU, Lamin R. MANSARAY
2020, 19 (1): 277-290.   DOI: 10.1016/S2095-3119(19)62657-2
Abstract110)      PDF in ScienceDirect      
Soil temperatures at different depths down the soil profile are important agro-meteorological indicators which are necessary for ecological modeling and precision agricultural activities.  In this paper, using time series of soil temperature (ST) measured at different depths (0, 5, 10, 20, and 40 cm) at agro-meteorological stations in northern China as reference data, ST was estimated from land surface temperature (LST) and normalized difference vegetation index (NDVI) derived from AQUA/TERRA MODIS data, and solar declination (Ds) in univariate and multivariate linear regression models.  Results showed that when daytime LST is used as predictor, the coefficient of determination (R2) values decrease from the 0 cm layer to the 40 cm layer.  Additionally, with the use of nighttime LST as predictor, the R2 values were relatively higher at 5, 10 and 15 cm depths than those at 0, 20 and 40 cm depths.  It is further observed that the multiple linear regression models for soil temperature estimation outperform the univariate linear regression models based on the root mean squared errors (RMSEs) and R2.  These results have demonstrated the potential of MODIS data in tandem with the Ds parameter for soil temperature estimation at the upper layers of the soil profile where plant roots grow in.  To the best of our knowledge, this is the first attempt at the synergistic use of
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Effect of intercropping on maize grain yield and yield components
HUANG Cheng-dong, LIU Quan-qing, LI Xiao-lin, ZHANG Chao-chun
2019, 18 (8): 1690-1700.   DOI: 10.1016/S2095-3119(19)62648-1
Abstract182)      PDF in ScienceDirect      
Smallholders in developing countries commonly use intercropping to produce crops with higher yield and value.  Many intercropping studies have been conducted under experimental conditions, but few studies have been performed in farmers’ fields.  We conducted a 4-year study using data from real farms to examine the relationships between yield and yield components of intercropped maize in the North China Plain.  Three field experiments were conducted to compare the suitability of different maize varieties in intercropping.  In the farm study, the grain yield of maize intercropped with watermelon was reduced by more than one third as compared to maize in wheat-maize double cropping, mainly due to lower ear density and lower 100-grain weight.  Under real farm conditions, the yield of intercropped maize increased with increasing ear density and 100-grain weight, while yield of sole maize increased with increasing grain number per ear and 100-grain weight.  In the field experiments, the maize cultivars commonly used in double cropping gave similar yields when grown in the intercropping system and their yields were closely related to ear density and 100-grain weight.  Our results demonstrated that ear density, rather cultivar, was a key factor affecting the productivity of intercropped maize.  Therefore, maintaining high ear density is a practical way for promoting productivity of maize in farmers’ intercropping practices.
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Identification and characterization of cell cultures with various embryogenic/regenerative potential in cotton based on morphological, cytochemical, and cytogenetical assessment
GUO Hui-hui, WU Jian-fei, CHEN Cui-xia, WANG Hong-mei, ZHAO Yun-lei, ZHANG Chao-jun, JIA Yin-hua, LIU Fang, NING Tang-yuan, CHU Zhao-hui, ZENG Fan-chang
2019, 18 (1): 1-8.   DOI: 10.1016/S2095-3119(17)61876-8
Abstract340)      PDF (10560KB)(457)      
Somatic embryogenesis (SE) plays a vital role in genetic transformation and massive propagation of important agronomical and economical crops.  Here, we conducted a systematic assessment of the morphological, cytochemical, and cytogenetical characteristics of six culture strains with various embryogenic/regenerative potential during SE process in cotton.  Results indicated that the six cell culture strains had stable ploidy levels, and did not reveal any relationship between the cytogenetic state and their morphogenetic potential.  Moreover, the six culture strains were compared via double staining with Evans blue and Acetocarmine to efficiently distinguish embryogenic and non-embryogenic cells and determine the embryogenic nature of the calli.  In addition, the kind of auxins added in medium affected not only growth property, color, size of cell clumps but also ploidy level and regeneration ability.  By combining analysis of morphological, cytochemical, and cytogenetical characteristics of the cell cultures, we are able to obtain and maintain homogeneous cell population with high morphogenic and regeneration ability and establish efficient somatic embryogenesis and regeneration system from short-term cell cultures in upland cotton, which highlight the application of biotechnological approaches in crop breeding, and above all, to better understand totipotency of cells in higher plants.
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Overexpression of GmBIN2, a soybean glycogen synthase kinase 3 gene, enhances tolerance to salt and drought in transgenic Arabidopsis and soybean hairy roots
WANG Ling-shuang, CHEN Qing-shan, XIN Da-wei, QI Zhao-ming, ZHANG Chao, LI Si-nan, JIN Yang-mei, LI Mo, MEI Hong-yao, SU An-yu, WU Xiao-xia
2018, 17 (09): 1959-1971.   DOI: 10.1016/S2095-3119(17)61863-X
Abstract530)      PDF in ScienceDirect      
Glycogen synthase kinase 3 (GSK3) is a kind of serine/threonine kinase widely found in eukaryotes.  Many plant GSK3 kinases play important roles in regulating stress responses.  This study investigated BRASSINOSTEROID-INSENSITIVE 2 (GmBIN2) gene, a member of the GSK3 protein kinase family in soybean and an orthologue of Arabidopsis BIN2/AtSK21GmBIN2 expression was increased by salt and drought stresses, but was not significantly affected by the ABA treatment.  To examine the function of GmBIN2, transgenic Arabidopsis and transgenic soybean hairy roots were generated.  Overexpression of GmBIN2 in Arabidopsis resulted in increased germination rate and root length compared with wild-type plants under salt and mannitol treatments.  Overexpression of GmBIN2 increased cellular Ca2+ content and reduced Na+ content, enhancing salt tolerance in transgenic Arabidopsis plants.  In the soybean hairy root assay, overexpression of GmBIN2 in transgenic roots also showed significantly higher relative root growth rate than the control when subjected to salt and mannitol treatments.  Measurement of physiological indicators, including proline content, superoxide dismutase (SOD) activity, and relative electrical conductivity, supported this conclusion.  Furthermore, we also found that GmBIN2 could up-regulate the expression of some stress-related genes in transgenic Arabidopsis and soybean hairy roots.  Overall, these results indicated that GmBIN2 improved tolerance to salt and drought in transgenic Arabidopsis and soybean hairy roots.
 
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Gene cloning and expression analyses of WBC genes in the developing grapevine seeds
TANG Yu-jin, WANG Qian, XUE Jing-yi, LI Yan, LI Rui-min, Steve Van Nocker, WANG Yue-jin, ZHANG Chao-hong
2018, 17 (06): 1348-1359.   DOI: 10.1016/S2095-3119(17)61827-6
Abstract445)      PDF in ScienceDirect      
White-brown complex (WBC) transporters, also called half-size ATP binding cassette G (ABCG) transporters, are involved in many biological processes, including seed development; however, the WBC transporters in grapevines received less attention to date.  To reveal the molecular characteristics of WBCs and the connection between WBCs and agronomic traits of stenospermocarpic (seedless) grapevine, we carried out a genomic census and analysis of ovule-associated expression for VvWBC genes in grapevine.  We identified 30 VvWBC genes and cloned full-length complementary DNAs (cDNAs) for 20 of these.  The tissue or organ-specific expression analysis showed that several VvWBCs exhibited distinct expression patterns with some showing tissue specificity.  Twelve VvWBC genes were found to be expressed in the developing ovules.  Moreover, the results of quantitative real-time PCR (qRT-PCR) suggested that four of twelve ovule-expressed VvWBCs have distinct expression profiles during the development of ovules between seeded and stenospermocarpic grapevines.  These four genes might be involved in ovule abortion.  Meanwhile, chromosome mapping, multiple sequence alignments, exon/intron structure analyses and synteny analyses were preformed on VvWBC genes.  Our experiments provide a new perspective on the mechanism of stenospermocarpic seedlessness and put forward a framework for further study of WBC transporters.
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6-Benzylaminopurine treatment maintains the quality of Chinese chive (Allium tuberosum Rottler ex Spreng.) by enhancing antioxidant enzyme activity
JIA Li-e, LIU Sheng, DUAN Xiao-ming, ZHANG Chao, WU Zhan-hui, LIU Ming-chi, GUO Shao-gui, ZUO Jin-hua, WANG Li-bin
2017, 16 (09): 1968-1977.   DOI: 10.1016/S2095-3119(17)61663-0
Abstract698)      PDF in ScienceDirect      
Chinese chive usually develops an off-flavor after a short storage time.  To explore effective ways to maintain the postharvest quality of Chinese chive, the effect of exogenous application of 6-benzylaminopurine (6-BA) on postharvest quality and antioxidant activity of chive was evaluated, and the mechanism of the physiological responses of chive to 6-BA treatment was explored.  Chives were sprayed for 10 min with 100, 300, or 500 mg L–1 6-BA or with alkaline solution as the control, then stored at (2±1)°C with a relative humidity (RH) of 80–85%.  We found that 300 mg L–1 6-BA significantly delayed yellowing and chlorophyll degradation, maintained the total phenolic and flavonoid content, and improved the activities of antioxidant enzymes, including superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD).  In conclusion, we identified exogenous application of 6-BA as an effective method for maintaining postharvest quality of Chinese chive.  In addition, our finding that the activities of antioxidant enzymes increase in response to exogenous 6-BA provides new insights into the mechanism of cytokinin-based postharvest fresh-keeping. 
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Automated detection and identification of white-backed planthoppers in paddy fields using image processing
YAO Qing, CHEN Guo-te, WANG Zheng, ZHANG Chao1 YANG Bao-jun, TANG Jian
2017, 16 (07): 1547-1557.   DOI: 10.1016/S2095-3119(16)61497-1
Abstract837)      PDF in ScienceDirect      
    A survey of the population densities of rice planthoppers is important for forecasting decisions and efficient control. Traditional manual surveying of rice planthoppers is time-consuming, fatiguing, and subjective. A new three-layer detection method was proposed to detect and identify white-backed planthoppers (WBPHs, Sogatella furcifera (Horváth)) and their developmental stages using image processing. In the first two detection layers, we used an AdaBoost classifier that was trained on a histogram of oriented gradient (HOG) features and a support vector machine (SVM) classifier that was trained on Gabor and Local Binary Pattern (LBP) features to detect WBPHs and remove impurities. We achieved a detection rate of 85.6% and a false detection rate of 10.2%. In the third detection layer, a SVM classifier that was trained on the HOG features was used to identify the different developmental stages of the WBPHs, and we achieved an identification rate of 73.1%, a false identification rate of 23.3%, and a 5.6% false detection rate for the images without WBPHs. The proposed three-layer detection method is feasible and effective for the identification of different developmental stages of planthoppers on rice plants in paddy fields.
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Productivity effect and overuse of pesticide in crop production in China
ZHANG Chao, Guanming Shi , SHEN Jian, HU Rui-fa
2015, 14 (9): 1903-1910.   DOI: 10.1016/S2095-3119(15)61056-5
Abstract1737)      PDF in ScienceDirect      
Chinese farmers are often accused of overusing pesticides that play a crucial role in enhancing crop yield by reducing losses to crop pests. Pesticide overuse has caused a series of negative health and environmental externalities. This paper quantifies the productivity effect and the optimal amount of pesticides in rice, cotton and maize production in China from the economic perspective. Using survey data collected in 2012 and 2013, both Cobb-Douglas and Weibull damage control specifications are used to estimate the production function. Results show that pesticides have statistically significant productivity effect on crop yield. On the condition of Weibull damage control specifications, the marginal products of 1 kg of the active ingredients of pesticides for rice, cotton and maize are 71.06, 22.73 and 98.45 kg, respectively. However, 57, 64 and 17% of the actual amount of pesticides are overused for rice, cotton and maize, respectively. Moreover, the productivity effect of pesticides would be overestimated using Cobb-Douglas specification without incorporating a damage control agent.
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Characterization of glyphosate-resistant goosegrass (Eleusine indica) populations in China
CHEN Jing-chao, HUANG Hong-juan, WEI Shou-hui, ZHANG Chao-xian, HUANG Zhao-feng
2015, 14 (5): 919-925.   DOI: 10.1016/S2095-3119(14)60910-2
Abstract2561)      PDF in ScienceDirect      
Goosegrass is a worst grass weed in orchards and turf. The increased use of glyphosate for goosegrass control has led to the occurrence of many resistant populations. Although glyphosate has been used to control weeds for the past 30 years in China, few reports are available on glyphosate-resistant (GR) googegrass. In this study, we determined the GR level of 14 goosegrass populations from Chengdu and Guangzhou, China. Glyphosate only controlled 3.1 and 25.0% of the populations SL5 and SL1, respectively, at the dose of 1 680 g acid equivalent (ae) ha–1 at 14 days after treatment (DAT). In contrast, the susceptible population (XD1) was completely (100%) controlled. The resistant index (RI) of SL5 and SL1 were 5.1 and 4.5, and the RI for SL2, SL3 and ZC1 were 4.2, 3.2 and 2.6, respectively. The RI for other populations was range from 1.8 to 2.5. Under the dose of glyphosate at 1 640 g ae ha–1 at 10 DAT, shikimate accumulation in susceptible population XD1 was 17.6 and 16.4 times higher than SL5 and SL1, respectively. And the chlorophyll content in the plant leaf of populations SL1, SL2 and SL5 were decreased slightly ranging from 22.6 to 28.0. These results confirmed that the SL1, SL2, SL3, ZC1 and SL5 populations had evolved moderate resistance to glyphosate. This is the first report for the GR goosegrass populations confirmed in Chengdu, China.
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Biotic Homogenization Caused by the Invasion of Solidago canadensis in China
CHEN Guo-qi, ZHANG Chao-bin, MA Ling, QIANG Sheng, John A Silander , Li Li Qi
2013, 12 (5): 835-845.   DOI: 10.1016/S2095-3119(13)60302-0
Abstract1777)      PDF in ScienceDirect      
Although studies argue that invasive species can cause biotic differentiation, some cases show that biological invasions actually decrease biodiversity through biotic homogenization. The concept of biotic homogenization through the invasion of a certain serious invasive plant species merit more studies. Hence, we used field surveys to quantitatively compare invasive populations of Solidago canadensis (SC) in China with the control sites (adjacent sites to SC present sites yet without the species) and SC native populations in the USA. We found that plant communities in SC invaded habitats shared similarities with those in SC native ranges. Bray-Curtis similarity clearly showed that the composition of plant communities in SC invaded habitats were similar to those in SC native ranges. Both in the native and introduced range, plant communities with SC present were characterized by SC being dominant, significantly lower species richness, α-diversity and β-diversity, as well as a decrease in the correlation coefficient between geographic distance and floristic similarities. SC favors fertile and moist loam habitat, while it dominated in various habitats in China, where more than 20 different dominants should have occurred. In conclusion, serious invasive species can quickly remodel and homogenize diverse communities by dominating them.
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Relationships Between Icariin and Anti-Apoptotic miRNA-21 in Mouse Blastocyst Development In vitro
SHI Ya-ran, WANG Zhan-he, CAO Yong-chun, LU Yan, TIAN Jin-ling, ZhANG Chao, JIA Zi-ye, CHEN Wu
2013, 12 (4): 663-669.   DOI: 10.1016/S2095-3119(13)60284-1
Abstract1254)      PDF in ScienceDirect      
In this study, the effect of icariin, a flavonoid from the Chinese traditional medicine epimedium, on miRNA-21 of mouse developmental blastocysts in vitro and the development of preimplantation embryos were studied. The possible effective targets of icariin promoting preimplantation embryo development in vitro and anti-apoptosis were determined. The embryos were cultured in modified CZB medium (mCZB) as control group. The experimental group (Ica group) was supplemented with 0.6 μg mL-1 icariin. Mouse pronuclear embryos were cultured in vitro until blastocysts. The development rates of preimplantation embryos were observed. The total cell number, apoptotic cell number and the rate of apoptotic cells in blastocysts were analysed by the staining of Hoechst33342 and labeling of TUNEL and detected under a laser confocal scanning microscope. The miRNA-21 expression, the mRNA levels of pro-apoptotic Caspase3, and the target genes of miRNA-21: pro-apoptotic PTEN, anti-apoptotic Bcl-2 were detected by real-time RT-PCR. The results showed that percentages of morulaes and blastocysts in Ica group were both extremely higher than control group ((85.14±6.57)% vs. (72.04±11.58)%; (82.50±7.11)% vs. (66.80±11.70)%, respectively, P<0.01). The total cell number of blastocysts had extreme difference between Ica group and control group ((61.40±9.64) vs. (46.23±4.50), P<0.01). The apoptotic cell number and rate of apoptotic cells of blastocysts were both reduced in Ica group ((1.47±0.51) vs. (2.94±0.66); (2.40±0.27)% vs. (6.25±0.62)%, respectively, P<0.01). Compared to control group, addition of icariin into mCZB extremely increased the expression of anti-apoptotic miRNA-21 (P<0.01), down-regulated pro-apoptotic Caspase3 (P<0.05) and PTEN (P<0.01), up-regulated anti-apoptotic Bcl-2 (P<0.01). In conclusion, icariin could reduce the apoptosis, promote the embryo development in vitro by enhancing miRNA-21 expression to up-regulated anti-apoptotic genes and down-regulated proapoptotic genes. These apoptosis-related genes were regulated by miRNA-21.
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Changes in Soil Hot-Water Extractable C, N and P Fractions During Vegetative Restoration in Zhifanggou Watershed on the Loess Plateau
XUE Sha, LI Peng, LIU Guo-bin, LI Zhan-bin, ZHANG Chao
2013, 12 (12): 2250-2259.   DOI: 10.1016/S2095-3119(13)60527-4
Abstract1183)      PDF in ScienceDirect      
The study was conducted in Zhifanggou Watershed, Shaanxi Province, China, to evaluate the effect of different vegetation types on hot-water extractable C, N and P fractions, with the aim to determine whether hot-water extractable fractions could be used as indicators of soil quality change in Loess Plateau. The six vegetation types established in 1975 were (i) Robinia pseudoacacia L., (ii) Caragana korshinkii Kom., (iii) Pinus tabulaeformis Carr., (iv) P. tabulaeformis-Amorpha fruticosa L., (v) R. pseudoacacia-A. fruticosa, and (vi) grassland. A cropped hillslope plot and a Platycladus orientalis L. native forest plot were used as references. The results indicated that the conversion of native forest to cropland resulted in a significant decline in the hot-water extractable C, N and P fractions. Hot-water extractable C, N, and P increased when cultivated land was revegetated, but after 30 years the amount of hot-water extractable C, N, and P in revegetated fields was still much lower compared to native forest. Hot-water extractable fractions increased more under mixed-forest than under pure-forest stands. Furthermore, there was a significant correlation between the hot-water extractable fractions and soil chemical and microbiological properties. The results showed that hot-water extractable fractions could be used as indicators of soil quality change on the Loess Plateau.
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Effect of Different Vegetation Types on the Rhizosphere Soil Microbial Community Structure in the Loess Plateau of China
ZHANG Chao, LIU Guo-bin, XUE Sha , XIAO Lie
2013, 12 (11): 2103-2113.   DOI: 10.1016/S2095-3119(13)60396-2
Abstract1386)      PDF in ScienceDirect      
The Loess Plateau in China is one of the most eroded areas in the world. Accordingly, vegetation restoration has been implemented in this area over the past two decades to remedy the soil degradation problem. Understanding the microbial community structure is essential for the sustainability of ecosystems and for the reclamation of degraded arable land. This study aimed to determine the effect of different vegetation types on microbial processes and community structure in rhizosphere soils in the Loess Plateau. The six vegetation types were as follows: two natural grassland (Artemisia capillaries and Heteropappus altaicus), two artificial grassland (Astragalus adsurgens and Panicum virgatum), and two artificial shrubland (Caragana korshinskii and Hippophae rhamnoides) species. The microbial community structure and functional diversity were examined by analyzing the phospholipid fatty acids (PLFAs) and community-level physiological profiles. The results showed that rhizosphere soil sampled from the H. altaicus and A. capillaries plots had the highest values of microbial biomass C, average well color development of carbon resources, Gram-negative (G-) bacterial PLFA, bacterial PLFA, total PLFA, Shannon richness, and Shannon evenness, as well as the lowest metabolic quotient. Soil sampled from the H. rhamnoides plots had the highest metabolic quotient and Gram-positive (G+) bacterial PLFA, and soil sampled from the A. adsurgens and A. capillaries plots had the highest fungal PLFA and fungal:bacterial PLFA ratio. Correlation analysis indicated a significant positive relationship among the microbial biomass C, G- bacterial PLFA, bacterial PLFA, and total PLFA. In conclusion, plant species under arid climatic conditions significantly affected the microbial community structure in rhizosphere soil. Among the studied plants, natural grassland species generated the most favorable microbial conditions.
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Soil Microbial Community Composition During Natural Recovery in the Loess Plateau, China
XIAO Lie, LIU Guo-bin, XUE Sha,ZHANG Chao
2013, 12 (10): 1872-1883.   DOI: 10.1016/S2095-3119(13)60399-8
Abstract1558)      PDF in ScienceDirect      
This study aimed to determine the characteristics of soil microbial community composition and its relationship with soil chemical properties during natural recovery in the Loess Plateau. The soil microbial community composition was analyzed by comparing the soil microbial phospholipid fatty acids (PLFAs) of eight croplands abandoned for 1, 3, 5, 10, 13, 15, 20, and 30 yr in the Dunshan watershed, northern Loess Plateau, China. The results showed that soil organic carbon, total nitrogen, soil microbial biomass carbon, and soil microbial biomass nitrogen significantly increased with the abandonment duration, whereas the metabolic quotient significantly decreased. The Shannon richness and Shannon evenness of PLFAs significantly increased after 10 yr of abandonment. Gram-negative, Gram-positive, bacterial, fungal, and total PLFAs linearly increased with increased abandonment duration. Redundancy analysis showed that the abandonment duration was the most important environmental factor in determining the PLFA microbial community composition. The soil microbial PLFAs changed from anteiso- to iso-, unsaturated to saturated, and short- to long-chain during natural recovery. Therefore, in the Loess Plateau, cropland abandonment for natural recovery resulted in the increase of the soil microbial PLFA biomass and microbial PLFA species and changed the microbial from chemolithotrophic to a more heterotrophic community.
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