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The conserved Xanthomonas effector XopM targets allene oxide synthase OsAOS3 and interferes with jasmonate-mediated defense in rice
Ying Li, Linlin Liu, Qi Wang, Yong Wang, Jiali Yan, Moein Khojasteh, Syed Mashab Ali Shah, Zhengyin Xu, Gongyou Chen
2026, 25 (6): 2449-2461.   DOI: 10.1016/j.jia.2024.08.018
Abstract139)      PDF in ScienceDirect      

Bacterial blight (BB) of rice caused by the phytopathogenic bacterium Xanthomonas oryzae pv. oryzae (Xoo) is a disease of global importance.  Xoo utilizes the type III secretion system (T3SS) and its effectors for virulence, and XopM is a conserved T3SS effector in Xanthomonas spp.  However, the virulence function of XopM is largely unknown.  In this study, we show that XopM contributes to Xoo virulence in rice.  We demonstrate that XopM interacts with allene oxide synthase OsAOS3, a key enzyme involved in jasmonic acid (JA) biosynthesis.  The expression levels of OsAOS3 and three homologues of OsAOS were elevated after Xoo infection.  Knockout mutants of OsAOS3 exhibited decreased JA accumulation and reduced resistance to Xoo and Xoryzae pv. oryzicola.  Moreover, JA-related defense genes were downregulated in osaos3 mutants during Xoo infection.  Based on our results, we propose a model showing how XopM hijacks OsAOS3 to interfere with JA-mediated defenses, leading to a suppression of rice immunity.  Our findings reveal a novel virulence strategy where Xanthomonas pathogens interfere with the JA pathway and modulate the host defense response.

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AcMYB12 and AcMYB29 promote flavonol biosynthesis through transcriptional regulation in onion (Allium cepa L.)
Qingwei Jia, Shuting Gai, Yiren Wang, Zhihui Zhang, Xiong Wu, Wenhui Wu, Yumeng Pang, Xiaonan Zhang, Lei Qin, Yong Wang
2026, 25 (3): 1035-1050.   DOI: 10.1016/j.jia.2025.06.023
Abstract139)      PDF in ScienceDirect      

Flavonols possess significant medical value and are essential for plant stress resistance.  These compounds constitute primary components of the nutritional value in onions, particularly in edible portions.  While the flavonol biosynthetic pathway has been extensively studied, its regulatory mechanisms in onions remain incompletely understood.  This investigation identified flavonol biosynthesis and regulatory genes through analysis of transcriptome and metabolomics data from different developmental stages of ‘SA1’.  Two R2R3-MYB transcription factors, AcMYB12 and AcMYB29, were identified as positive regulators of onion flavonol biosynthesis.  Transcriptional activation assays demonstrated that both could activate AcCHS, AcF3´H, and AcFLS.  Yeast one-hybrid assays confirmed their direct binding to these gene promoters.  The expression levels of flavonol pathway genes and flavonol contents in AcMYB12/AcMYB29-overexpressing onion calli and Arabidopsis plants were significantly higher than those in the control group.  Transient silencing assays revealed partial functional redundancy between these two transcription factors.  Notably, their regulatory capabilities exhibited significant differences.  AcMYB12 predominantly regulates flavonol accumulation, while AcMYB29 specifically influences quercetin.  Further investigation of the molecular mechanisms underlying differential regulation indicated variations in cis-elements within flavonol pathway gene promoters and differences in binding activity between transcription factors and cis-elements.

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An integrate methods to improve the high efficiency of embryo rescue breeding in seedless grapes
Xi Chen, Khalid Ayesha, Xue Wen, Yanan Zhang, Mengru Dou, Kexuan Jia, Yong Wang, Yuling Li, Feng Sun, Guotian Liu, Yan Xu
2026, 25 (2): 721-733.   DOI: 10.1016/j.jia.2025.02.042
Abstract147)      PDF in ScienceDirect      
The embryo rescue technique plays an essential role in developing new seedless grape varieties.  To enhance the efficiency of seedless grape embryo rescue breeding, this study evaluated 22 hybrid combinations and systematically investigated the effects of parental genotypes and plant hormones on embryo development and germination.  Additionally, an in-depth analysis was conducted on the conversion of abnormal plantlets.  Results indicate that ‘Ruby Seedless’, ‘Delight’, ‘Huozhouheiyu’, ‘Zitian Seedless’, and ‘Zhengyan Seedless’ are suitable as maternal parents, whereas ‘Zitian Seedless’, ‘Shennongxiangfeng’, ‘Hongqitezao’, and ‘Guibao’ perform optimally as paternal parents.  Among these, the crosses ‘Ruby Seedless×Shennongxiangfeng’ and ‘Ruby Seedless×Zitian Seedless’ exhibited the highest embryo rescue efficiency, with embryo development rates of 55.05 and 59.76%, yielding 1,348 and 2,235 viable plantlets, respectively.  When 1.0 mg L–1 zeatin (ZT) was added to the MM3 medium supplemented with 0.2 mg L–1 indole-3-acetic acid (IAA), the embryo development rate of ‘Ruby Seedless×Zitian Seedless’ increased by 64.73%.  In the WPM germination medium, supplementation with 0.2 mg L–1 ZT and 0.2 mg L–1 IAA resulted in the highest germination rate of 85.71% for the hybrid combination ‘Huozhouheiyu×Shine Muscat’.  Furthermore, 3,365 abnormal plantlets were rescued via direct transformation and hypocotyl-induced adventitious bud regeneration, among which 1,234 were transformed into normal plantlets.  Following hybridization, a total of 4,287 plants were successfully acclimatized and transplanted.  This study provides theoretical insights to improve the efficiency of embryo rescue breeding in seedless grapes and offers valuable genetic resources for future breeding programs.
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Mitotic pollen abnormalities are linked to Ogura cytoplasmic male sterility in Chinese cabbage (Brassica rapa L. ssp. pekinensis)
Xiaochun Wei, Yuanlin Zhang, Yanyan Zhao, Weiwei Chen, Ujjal Kumar Nath, Shuangjuan Yang, Henan Su, Zhiyong Wang, Wenjing Zhang, Baoming Tian, Fang Wei, Yuxiang Yuan, Xiaowei Zhang
2025, 24 (3): 1092-1107.   DOI: 10.1016/j.jia.2024.07.046
Abstract207)      PDF in ScienceDirect      

Ogura cytoplasmic male sterility (Ogura CMS) was first identified in wild radish (Raphanus sativus) and resulted in complete pollen abortion.  However, the molecular mechanism of Ogura CMS in Chinese cabbage remains unclear.  A cytological analysis confirmed nuclear degradation during the late uninucleate stage of pollen development, which diminished by the tricellular stage.  Concurrently, tapetal cells exhibited abnormal enlargement and vacuolation starting from the tetrad stage.  Serious developmental defects were observed in the pollen wall.  During early pollen development, genes associated with cytochrome c and programmed cell death (PCD) were upregulated in the Ogura CMS line, while genes involved in pollen wall mitosis were downregulated.  Conversely, at the late stage of pollen development, peroxisome and autophagy-related genes in the Ogura CMS line were upregulated.  The mitochondrial orf138 gene mutation triggered the PCD process in tapetal cells, leading to their abnormal enlargement and the degradation of their contents, eventually resulting in vacuolation at the tricellular stage.  These tapetal defects hindered the provision of adequate sporopollenin and nutrients to the microspores, consequently leading to abnormal pollen wall development and abnormal mitosis in the microspores.  Ultimately, nuclear dispersion commenced during the late uninucleate stage, and autophagy occurred in the late stage of pollen development.  Consequently, the plant could not produce functional pollen, resulting in male sterility in Chinese cabbage.  Studies of Ogura CMS can promote the production and application of male sterile materials and enrich male sterile resources, which is of great significance for hybrid breeding.


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Involvement of FoVEL1 and FoLAE1 in conidiation, virulence and secondary metabolism of Fusarium oxysporum f. sp. niveum
Yang Sun, Xuhuan Zhang, Zhenqin Chai, Yuying Li, Zheng Ren, Miaomiao Wang, Zhiqing Ma, Yong Wang, Juntao Feng
2025, 24 (10): 3941-3952.   DOI: 10.1016/j.jia.2024.01.029
Abstract188)      PDF in ScienceDirect      

The velvet protein family serves as a crucial factor in coordinating development and secondary metabolism in numerous pathogenic fungi.  However, no previous research has examined the function of the velvet protein family in Fusarium oxysporum f. sp. niveum (FON), a pathogen causing a highly destructive disease in watermelon.  In this study, ∆fovel1 and ∆folae1 deletion mutants and ∆fovel1-C and ∆folae1-C corresponding complementation mutants of FON were validated.  Additionally, the phenotypic, biochemical, and virulence effects of the deletion mutants were investigated.  Compared to the wild-type strains, the ∆fovel1 and ∆folae1 mutants exhibited altered mycelial phenotype, reduced conidiation, and decreased production of bikaverin and fusaric acid.  Furthermore, their virulence on watermelon plant roots significantly decreased.  All these alterations in mutants were restored in corresponding complementation strains.  Notably, yeast two-hybrid results demonstrated an interaction between FoVel1 and FoLae1.  This study reveals that FoVEL1 and FoLAE1 play essential roles in secondary metabolism, conidiation, and virulence in FON.  These findings enhance our understanding of the genetic and functional roles of VEL1 and LAE1 in pathogenic fungi.

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