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Genome wide association analysis identifies candidate genes for fruit quality and yield in Actinidia eriantha 

Yingzhen Wang, Ying Wu, Xinlei Wang, Wangmei Ren, Qinyao Chen, Sijia Zhang, Feng Zhang, Yunzhi Lin, Junyang Yue, Yongsheng Liu
2024, 23 (6): 1929-1939.   DOI: 10.1016/j.jia.2023.11.025
Abstract167)      PDF in ScienceDirect      

Quality and yield are the primary concerns in kiwifruit breeding, but research on the genetic mechanisms of fruit size, shape, and ascorbic acid (ASA) content is currently very limited, which restricts the development of kiwifruit molecular breeding.  In this study, we obtained a total of 8.88 million highly reliable single nucleotide polymorphism (SNP) markers from 140 individuals from the natural hybrid offspring of Actinidia eriantha cv. ‘White’ using whole genome resequencing technology.  A genome-wide association study was conducted on eight key agronomic traits, including single fruit weight, fruit shape, ASA content, and the number of inflorescences per branch.  A total of 59 genetic loci containing potential functional genes were located, and candidate genes related to single fruit weight, fruit length, ASA content, number of inflorescences per branch and other traits were identified within the candidate interval, such as AeWUSCHEL, AeCDK1 (cell cycle dependent kinase), AeAO1 (ascorbic oxidase) and AeCO1 (CONSTANS-like 4).  After constructing an RNAi vector for AeAO1 and injecting it into the fruit of cv. ‘Midao 31’ to interfere with the expression of the AeAO1 gene, the results showed that the activity of ascorbic oxidase in the fruit of ‘Midao 31’ significantly decreased, while the content of ASA significantly increased.  This study provides valuable insights into the genetic basis of variation in Aeriantha fruit traits, which may benefit molecular marker-assisted breeding efforts.

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Dissecting the genetic basis of maize deep-sowing tolerance by combining association mapping and gene expression analysis
YANG Yue, MA Yu-ting, LIU Yang-yang, Demar LYLE, LI Dong-dong, WANG Ping-xi, XU Jia-liang, ZHEN Si-han, LU Jia-wen, PENG Yun-ling, CUI Yu, FU Jun-jie, DU Wan-li, ZHANG Hong-wei, WANG Jian-hua
2022, 21 (5): 1266-1277.   DOI: 10.1016/S2095-3119(21)63649-3
Abstract150)      PDF in ScienceDirect      
Deep-sowing is an important method for avoiding drought stress in crop species, including maize.  Identifying candidate genes is the groundwork for investigating the molecular mechanism underlying maize deep-sowing tolerance.  This study evaluated four traits (mesocotyl length at 10 and 20 cm planting depths and seedling emergence rate on days 6 and 12) related to deep-sowing tolerance using a large maize population containing 386 inbred lines genotyped with 0.5 million high-quality single nucleotide polymorphisms (SNPs).  The genome-wide association study detected that 273 SNPs were in linkage disequilibrium (LD) with the genetic basis of maize deep-sowing tolerance.  The RNA-sequencing analysis identified 1 944 and 2 098 differentially expressed genes (DEGs) in two comparisons, which shared 281 DEGs.  By comparing the genomic locations of the 273 SNPs with those of the 281 DEGs, we identified seven candidate genes, of which GRMZM2G119769 encoded a sucrose non-fermenting 1 kinase interactor-like protein.  GRMZM2G119769 was selected as the candidate gene because its homologs in other plants were related to organ length, auxin, or light response.  Candidate gene association mapping revealed that natural variations in GRMZM2G119769 were related to phenotypic variations in maize mesocotyl length.  Gene expression of GRMZM2G119769 was higher in deep-sowing tolerant inbred lines.  These results suggest that GRMZM2G119769 is the most likely candidate gene.  This study provides information on the deep-sowing tolerance of maize germplasms and identifies candidate genes, which would be useful for further research on maize deep-sowing tolerance.
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Interactive effect of shade and PEG-induced osmotic stress on physiological responses of soybean seedlings
Muhammad Ahsan ASGHAR, JIANG Heng-ke, SHUI Zhao-wei, CAO Xi-yu, HUANG Xi-yu, Shakeel IMRAN, Bushra AHMAD, ZHANG Hao, YANG Yue-ning, SHANG Jing, YANG Hui, YU Liang, LIU Chun-yan, YANG Wen-yu, SUN Xin, DU Jun-bo
2021, 20 (9): 2382-2394.   DOI: 10.1016/S2095-3119(20)63383-4
Abstract140)      PDF in ScienceDirect      
Intensively farmed crops used to experience numerous environmental stresses.  Among these, shade and drought significantly influence the morpho-physiological and biochemical attributes of plants.  However, the interactive effect of shade and drought  on the growth and development of soybean under dense cropping systems has not been reported yet.  This study investigated the interactive effect of PEG-induced osmotic stress and shade on soybean seedlings.  The soybean cultivar viz., C-103 was subjected to PEG-induced osmotic stress from polyethylene glycol 6000 (PEG-6000) under shading and non-shading conditions.  PEG-induced osmotic stress significantly reduced the relative water contents, morphological parameters, carbohydrates and chlorophyll contents under both light environments.  A significant increase was observed in osmoprotectants, reactive oxygen species and antioxidant enzymes in soybean seedlings.  Henceforth, the findings revealed that, seedlings grown under non-shading conditions produced more malondialdehyde and hydrogen peroxide contents as compared to the shade-treated plants when subjected to PEG-induced osmotic stress.  Likewise, the shaded plants accumulated more sugars and proline than non-shaded ones under drought stress.  Moreover, it was found that non-shaded grown plants were more sensitive to PEG-induced osmotic stress than those exposed to shading conditions, which suggested that shade could boost the protective mechanisms against osmotic stress or at least would not exaggerate the adverse effects of PEG-induced osmotic stress in soybean seedlings.    
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Methyl salicylate reduces aphid abundance in maize through multiple modes of action
Yingyue Xu, Xuanchen Zhou, Bin Yan, Yang Yue, Min Zhang, Haibin Yuan, Shuai Liu
DOI: 10.1016/j.jia.2024.12.027 Online: 25 December 2024
Abstract16)      PDF in ScienceDirect      

Maize is a cornerstone of global food security, but it faces increasing challenges from corn aphids, particularly with the widespread adoption of genetically modified Bt maize. This trend suggests a growing need for sustainable pest control strategies. Methyl salicylate has been proposed as a volatile compound with the potential for managing aphids. In this study, Y-tube olfactometer and Petri dish dispersal assays showed that methyl salicylate can repel wingless and winged aphids at 0.1 to 1,000 ng μL-1. Moreover, at concentrations of 100 and 1,000 ng μL-1, it was found to attract beneficial insects such as adults and larvae of Harmonia axyridis. Exposing maize plants to methyl salicylate resulted in a prominent reduction in the number of aphids compared to the control. In addition, clip cage experiment assays showed that the nymphal development duration was increased, while the adult duration and generation time were reduced, and the reproductive duration and total number of aphid offspring in plants treated with methyl salicylate were dramatically lower than in the control. Over two years of field trials, methyl salicylate-impregnated alginate beads provided significant reductions in the populations of key aphid species, including Rhopalosiphum padi, Rhopalosiphum maidis, and Aphis gossypii. Concurrently, there were marked increases in the presence of natural predators such as H. axyridis, Propylaea japonica, Syrphus corollae, and Chrysoperla sinica. These compelling results underscore the potential of methyl salicylate as a key component in integrated pest management strategies for maize, offering a green alternative to traditional chemical control.

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