导航切换
Journal of Integrative Agriculture
JIA Home
About JIA
Description
Video introduction
Editor-in-chief
Editorial board
Guideline of JIA editorial board
Editorial board
Youth Editorial Board
For authors
Instruction for authors
Title page
Copyright agreement
Templates
Endnote
Subscription
Contact
Journals
Publication Years
Keywords
Search within results
(((WU Wei[Author]) AND 1[Journal]) AND year[Order])
AND
OR
NOT
Title
Author
Institution
Keyword
Abstract
PACS
DOI
Please wait a minute...
For Selected:
Download Citations
EndNote
Ris
BibTeX
Toggle Thumbnails
Select
Identification of
Heterodera
schachtii
on sugar beet in Xinjiang Uygur Autonomous Region of China
PENG Huan, LIU Hui, GAO Li, JIANG Ru, LI Guang-kuo, GAO Hai-feng, Wu Wei, WANG Jun, Zhang Yu, HUANG Wen-kun, KONG Ling-an, PENG De-liang
2022, 21 (
6
): 1694-1702. DOI:
10.1016/S2095-3119(21)63797-8
Abstract
(
258
)
PDF in ScienceDirect
The sugar beet cyst nematode,
Heterodera schachtii
, is a major parasite of sugar beet which has been recognized and listed as a quarantine nematode in China and more than 20 countries and regions worldwide. A survey for important nematodes was undertaken in the sugar beet planting area of China during 2015–2018, and numerous cysts were collected from sugar beet fields in Xinyuan County, Xinjiang Uygur Autonomous Region of China. The observations of morphological and morphometric characteristics revealed that cysts, vulval cones and second-stage juveniles of the Xinjiang population were in the same range of each other and within those of other reported
H. schachtii
populations. Molecular analysis of rDNA-ITS, 28S-D2/D3 and mtDNA cytochrome c oxidase subunit 1 (COI) gene sequences suggested that the Xinjiang population clustered in a branch with those foreign populations, and the sequence similarity was as high as 99.81–100%. Moreover, this result was confirmed by PCR assay with species-specific primer SHF6 and rDNA2 of
H. schachtii
, and the pathogenicity test confirmed successful Xinjiang population reproduction in both plant hosts. In conclusion, based on morphological and molecular characterization, this study confirmed that the cyst nematode population collected from sugar beet fields in Xinjiang is
H. schachtii
. As far as we know, this is the first report of
H. schach
ti
i
on sugar beets in Xinjiang, China.
Reference
|
Related Articles
|
Metrics
Select
Genome-wide analysis of the
SCPL
gene family in grape (
Vitis
vinifera
L.)
WANG Xi-cheng, WU Wei-min, ZHOU Bei-bei, WANG Zhuang-wei, QIAN Ya-ming, WANG Bo, YAN Li-chun
2021, 20 (
10
): 2666-2679. DOI:
10.1016/S2095-3119(20)63587-0
Abstract
(
260
)
PDF in ScienceDirect
Serine carboxypeptidase-like (SCPL) proteins are a group of acyltransferase enzymes that have important roles in plant growth, development, and stress responses. Although SCPL proteins have been studied in many plants, the biological functions of
SCPL
genes in grape are still unknown. In this study, 59 putative SCPL proteins were identified from the grape genome. A bioinformatics analysis, including chromosomal locations, exon/intron structures, phylogeny, cis-elements, and conserved motifs, was performed for the gene family. The phylogenetic analysis revealed that VvSCPL proteins could be classified into three groups, with the gene motifs in each group showing high similarity levels. The number of exons in the
VvSCPL
genes ranged from 1 to 19, suggesting significant variations among grape
SCPL
genes. The expression of the
VvSCPL
genes, as assessed by RNA sequencing (RNA-seq) and quantitative real-time PCR, showed that most
VvSCPL
genes responded to drought- and waterlogging-stress treatments, which indicated their roles in abiotic stress responses. The results provide useful information for further study of
SCPL
genes in grape.
Reference
|
Related Articles
|
Metrics
Select
Identification and functional prediction of long intergenic noncoding RNAs in fetal porcine
longissimus dorsi
muscle
LI Cen-cen, YU Shu-long, REN Hai-feng, WU Wei, WANG Ya-ling, HAN Qiu, XU Hai-xia, XU Yong-jie, ZHANG Peng-peng
2021, 20 (
1
): 201-211. DOI:
10.1016/S2095-3119(20)63261-0
Abstract
(
174
)
PDF in ScienceDirect
Pigs are globally farmed animals which provide protein for human consumption in the form of skeletal muscle. To better understand the function of long intergenic noncoding RNAs (lincRNAs) in porcine skeletal muscle growth and development, we collected RNA-seq data from porcine longissimus dorsi muscle (LDM) during embryonic development. We identified a total of 739 lincRNA transcripts, which were distributed on all chromosomes except the chromosome Y, and analyzed their molecular characteristics. Compared to protein-coding genes, lincRNAs showed shorter transcripts, longer exons, fewer exons and higher tissue specificity. In addition, the abundance of lincRNAs in five embryonic development stages were analyzed and 45 differentially expressed lincRNAs were screened, three of which were highly expressed in LDM during porcine embryonic development. Finally, we predicted the potential target genes and functions of the lincRNAs, and identified 1 537 cis-target genes and 8 571
trans
-target genes. Furthermore, we identified two key candidate lincRNAs involved in muscle development,
XLOC_024652
and
XLOC_001832
, for post-trial validation. Our results provide a genome-wide resource of lincRNAs which are potentially involved in porcine embryonic skeletal muscle development and lay a foundation for the further study of their functions.
Reference
|
Related Articles
|
Metrics
Select
Detection and enumeration of wheat grains based on a deep learning method under various scenarios and scales
WU Wei, YANG Tian-le, LI Rui, CHEN Chen, LIU Tao, ZHOU Kai, SUN Cheng-ming, LI Chun-yan, ZHU Xin-kai, GUO Wen-shan
2020, 19 (
8
): 1998-2008. DOI:
10.1016/S2095-3119(19)62803-0
Abstract
(
145
)
PDF in ScienceDirect
Grain number is crucial for analysis of yield components and assessment of effects of cultivation measures. The grain number per spike and thousand-grain weight can be measured by counting grains manually, but it is time-consuming, tedious and error-prone. Previous image processing algorithms cannot work well with different backgrounds and different sizes. This study used deep learning methods to resolve the limitations of traditional image processing algorithms. Wheat grain image datasets were collected in the scenarios of three varieties, six background and two image acquisition devices with different heights, angles and grain numbers, 1 748 images in total. All images were processed through color space conversion, image flipping and rotation. The grain was manually annotated, and the datasets were divided into training set, validation set and test set. We used the TensorFlow framework to construct the Faster Region-based Convolutional Neural Network Model. Using the transfer learning method, we optimized the wheat grain detection and enumeration model. The total loss of the model was less than 0.5 and the mean average precision was 0.91. Compared with previous grain counting algorithms, the grain counting error rate of this model was less than 3% and the running time was less than 2 s. The model can be effectively applied under a variety of backgrounds, image sizes, grain sizes, shooting angles, and shooting heights, as well as different levels of grain crowding. It constitutes an effective detection and enumeration tool for wheat grain. This study provides a reference for further grain testing and enumeration applications.
Reference
|
Related Articles
|
Metrics
Select
Identification of SNPs and expression patterns of
FZD3
gene and its effect on wool traits in Chinese Merino sheep (Xinjiang Type)
ZHAO Bing-ru, FU Xue-feng, TIAN Ke-chuan, HUANG Xi-xia, DI Jiang, BAI Yan, XU Xin-ming, TIAN Yue-zhen, WU Wei-wei, ABLAT Sulayman, ZENG Wei-dan, HANIKEZI Tulafu
2019, 18 (
10
): 2351-2360. DOI:
10.1016/S2095-3119(19)62735-8
Abstract
(
153
)
PDF in ScienceDirect
As a member of the Frizzled family, Frizzled3 (
FZD3
) is a receptor of the canonical Wnt signaling pathway and plays a vital role in mammalian hair follicle developmental processes. However, its effects on wool traits are not clear. The objectives of this study were to identify the single nucleotide polymorphisms (SNPs) and the expression patterns of
FZD3
gene, and then to determine whether it affected wool traits of Chinese Merino sheep (Xinjiang Type) or not. PCR-single stranded conformational polymorphism (PCR-SSCP) and sequencing were used to identify mutation loci, and general linear model (GLM) with SAS 9.1 was used for the association analysis between wool traits and SNPs. Quantitative real-time PCR (qRT-PCR) was used to investigate
FZD3
gene expression levels. The results showed that six exons of
FZD3
gene were amplified and two mutation loci were identified in exon 1 (NC_019459.2: g.101771685 T>C (SNP1)) and exon 3 (NC_019459.2: g.101810848, A>C (SNP2)), respectively. Association analysis showed that SNP1 was significantly associated with mean fiber diameter (MFD) (
P
=0.04) and live weight (LW) (
P
=0.0004), SNP2 was significantly associated with greasy fleece weight (GFW) (
P
=0.04). The expression level of
FZD3
gene in skin tissues of the superfine wool (SF) group was significantly lower (
P
<0.05) than that of the fine wool (F) group. Moreover, it had a higher expression level (
P
<0.01) in skin tissues than in other tissues of Chinese Merino ewes. While, its expression level had a fluctuant expression in skin tissues at different developmental stages of embryos and born lambs, with the highest expression levels (
P
<0.01) at the 65th day of embryos. Our study revealed the genetic relationship between
FZD3
variants and wool traits and two identified SNPs might serve as potential and valuable genetic markers for sheep breeding and lay a molecular genetic foundation for sheep marker-assisted selection (MAS).
Reference
|
Related Articles
|
Metrics
Select
Genetic mapping of quantitative trait loci for the stigma exsertion rate in rice (
Oryza sativa
L.)
Md Habibur Rahman, ZHANG Ying-xin, SUN Lian-ping, ZHANG Ke-qin, Md Sazzadur Rahman, WU Wei-xun, ZHAN Xiao-deng, CAO Li-yong, CHENG Shi-hua
2017, 16 (
07
): 1423-1431. DOI:
10.1016/S2095-3119(16)61540-X
Abstract
(
1026
)
PDF in ScienceDirect
The efficiency of hybrid rice seed production can be improved by increasing the percentage of exserted stigmas. To identify quantitative trait loci (QTLs) for this trait, we conducted QTL mapping using 75 chromosome segment substitution lines (CSSLs) developed from a cross between the donor parent, Xieqingzao B (XQZB), a maintainer line which has high stigma exsertion and the recurrent parent, Zhonghui 9308 (ZH9308), a restorer line which has low stigma exsertion. A total of nine QTLs (
qSSE5
,
qSSE10
,
qSSE11
,
qDSE10
,
qDSE11
,
qTSE5
,
qTSE6
,
qTSE10
,
and qTSE11
) for single stigma exsertion (SSE), dual stigma exsertion (DSE) and total stigma exsertion (TSE) were assessed in two environments (Hainan and Zhejiang). Six of these QTLs (
qSSE10
,
qSSE11
,
qDSE10
,
qDSE11
,
qTSE10
, and
qTSE11
) were found in both environments, while one QTL (
qTSE6
) was found in only Hainan, and two QTLs (
qSSE5
and
qTSE5
) were found in only Zhejiang. The
qSSE10
,
qSSE11
,
qDSE10
,
qDSE11
,
qTSE6
,
qTSE10
, and
qTSE11
alleles, which are derived from the parent XQZB, exhibited a positive additive effect. In contrast, the
qSSE5
and
qTSE5
alleles, which are derived from the parent ZH9308, exhibited a negative additive effect. The SSE, DSE and TSE traits were significantly correlated with each other in an environmentally dependent manner. These results indicated that the lines showing higher values for SSE were more likely to exhibit increased values for DSE, which would ultimately increase TSE. To evaluate the advantage of exserted stigmas for cross-pollination, single, dual and total stigma exsertion should be considered separately in future attempts at genetic improvement to achieve increased production of rice hybrid seeds. This study also provides information for fine mapping, gene cloning and particularly marker-assisted selection (MAS), on the latter and with an emphasis the phenotypic effects and implications of the QTLs for practical use in hybrid rice breeding.
Reference
|
Related Articles
|
Metrics
Select
Influence of gallic acid on porcine neutrophils phosphodiesterase 4, IL-6, TNF-α and rat arthritis model
JIANG Dai-xun, ZHANG Mei-hua, ZHANG Qian, CHEN Yi-shan, MA Wen-jing, WU Wei-peng, MU Xiang
2015, 14 (
4
): 758-764. DOI:
10.1016/S2095-3119(14)60824-8
Abstract
(
1910
)
PDF in ScienceDirect
Our previous studies showed that the anti-inflammatory effects of Paeonia lactiflora roots extract may be mediated, at least in part, through its gallic acid content, and this effect may be regulated in part by an inhibition on cAMP-phosphodiesterase (PDE). To explore the anti-inflammatory effect and mechanism, the influence of gallic acid on neutrophils PDE4 activity and expression, TNF-α and IL-6 content and rat arthritis model were further studied. PDE4 activity and gene express were calculated respectively by substrate cAMP change examined with HPLC and real-time RT-PCR. The concentration of IL-6 and TNF-α in supernatant were assayed by ELISA method. Model of rat arthritis was caused by complete Freund’s adjuvant. Results showed that gallic acid had a dose-dependent restraint on PDE4 activity of neutrophils in vitro, promoted significantly PDE4A expression (P<0.01), and had no influence on the expressions of PDE4B and 4D. However, PDE4C expression was not detected. Gallic acid could promote IL-6 release (P<0.05), and inhibit TNF-α release of neutrophils (P<0.05). The experiment in vivo showed that gallic acid had obvious restraint on local inflammation of animal model (P<0.05). Therefore, the anti-inflammatory effect of gallic acid may be mediated in part through an inhibition on PDE4 activity and further an increase of IL-6 and a decrease of TNF-α of neutrophils, and this effect seemed to have no relationship with PDE4 expression.
Reference
|
Related Articles
|
Metrics
Select
Genome Array on Differentially Expressed Genes of Skin Tissue in Cashmere Goat at Early Anagen of Cashmere Growth Cycle Using DNA Microarray
DI Jiang, XU Xin-ming, Lazate Ainiwaer, ZHANG Yan-hua, TIAN Ke-chuan, YU Li-juan, WU Weiwei, Hanikezi Tulafu, FU Xue-feng , Marzeya Yasen
2014, 13 (
10
): 2243-2252. DOI:
10.1016/S2095-3119(13)60606-1
Abstract
(
1192
)
PDF in ScienceDirect
In order to study the molecular mechanism involved in cashmere regeneration, this study investigated the gene expression profile of skin tissue at various stages of the cashmere growth cycle and screen differentially expressed genes at proangen in 10 cashmere goats at 2 years of age using agilent sheep oligo microarray. Significance analysis of microarray (SAM) methods was used to identify the differentially expressed genes, Hierarchical clustering was performed to clarify these genes in association with different cashmere growth stages, and GO (Gene ontology) and the pathway analyses were con-ducted by a free web-based Molecular Annotation System3.0 (MAS 3.0). Approximately 10200 probe sets were detected in skin tissue of 2-yr-old cashmere goat. After SAM analysis of the microarray data, totally 417 genes were shown to be differentially expressed at different cashmere growth stages, and 24 genes are significantly up-regulated (21) or down-regulated (3) at proangen concurrently compared to angen and telogen. Hierarchical clustering analysis clearly distinguished the differentially expressed genes of each stage. GO analysis indicated that these altered genes at proangen were predominantly involved in collagen fibril organization, integrin-mediated signaling pathway, cell-matrix adhesion, cell adhesion, transforming growth factor-β (TGF-β) receptor signaling pathway, regulation of cell growth. Kyoto encyclopedia of genes and genomes (KEGG) analysis showed that the significant pathways involved mainly included focal adhesion and extracellular matrixc (ECM)-receptor interaction. Some important genes involved in these biological processes, such as COL1A1, COL1A2, COL3A1, SPARC, CYR61 and CTGF, were related to tissue remolding and repairing and detected by more than one probe with similar expression trends at different stages of cashmere growth cycle. The different expression of these genes may contribute to understanding the molecular mechanism of cashmere regeneration.
Reference
|
Related Articles
|
Metrics
Select
The Effect of Plastic-Covered Ridge and Furrow Planting on the Grain Filling and Hormonal Changes of Winter Wheat
LIU Yang, HAN Juan, WEN Xiao-xia, WU Wei, GUO Qiang, ZENG Ai , LIAO Yun-cheng
2013, 12 (
10
): 1771-1782. DOI:
10.1016/S2095-3119(13)60337-8
Abstract
(
1915
)
PDF in ScienceDirect
Although plastic-covered ridge and furrow planting (RF) has been reported to produce substantial increases in the grain weight of winter wheat, the underlying mechanism is not yet understood. The present study used two cultivars, Xinong 538 and Zhoumai 18, and RF and traditional flatten planting (TF, control) with the objective of investigating the effect of RF on wheat grain filling and the possible relationship of hormonal changes in the wheat grains under RF to grain filling. The results indicated that RF significantly increased the grain weight, although the effects on grain filling were different: RF significantly increased the grain-filling rate and grain weight of inferior grains, whereas RF had no significant effect on grainfilling rate and grain weight of superior grains. The ?nal grain weight of inferior grains under RF was 39.1 and 50.7 mg for Xinong 538 and Zhoumai 18, respectively, 3.6 and 3.4 mg higher than the values under TF. However, the final grain weight of superior grains under RF was only 0.6 and 0.8 mg higher than under TF for Xinong 538 and Zhoumai 18, respectively. RF significantly decreased the ethylene and gibberellic acid content in the inferior grains and increased the indole-3-acetic acid, abscisic acid and zeatin + zeatin riboside content in the inferior grains; however, no significant difference between RF and TF was observed for the hormonal content in the superior grains. Based on these results, we concluded that RF significantly modulated hormonal changes in the inferior grains and, thus, affected the grain filling and grain weight of the inferior grains; in contrast, RF had no significant effect on grain filling, grain weight and hormonal changes in the superior wheat grains.
Reference
|
Related Articles
|
Metrics
Select
Genetic Analysis and Mapping of an Enclosed Panicle Mutant Locus esp1 in Rice (Oryza sativa L.)
DUAN Yuan-lin, GUAN Hua-zhong, ZHUO Ming, CHEN Zhi-wei, LI Wen-tao, PAN Run-sen, MAO Da-mei, ZHOU Yuan-chang, WU Wei-ren
2012, 12 (
12
): 1933-1939. DOI:
10.1016/S1671-2927(00)8729
Abstract
(
1879
)
PDF in ScienceDirect
A mutant was isolated from the M2 of 60Co-g ray mutagenized male-fertility restorer line Zao-R974 in rice. The mutant showed pleiotropic phenotypes including dwarfism, delayed heading time, short and partially enclosed panicles, short uppermost internode, decreased grain and secondary branch numbers per panicle, and partially degenerated spikelets. The mutant was named as esp1 (enclosed shorter panicle 1). Genetic analysis indicated that the mutant phenotype was controlled by a recessive locus. Spraying exogenous GA3 did not rescue the panicle enclosure. Using an F2 and a BC1 population of the cross between esp1 and a japonica cultivar Nipponbare, we mapped the ESP1 locus to a region of ~260 kb on chromosome 11. This result provides a basis for further map-based cloning of the ESP1 locus.
Reference
|
Related Articles
|
Metrics
Select
Functional Characterization of a NEM1-Like Gene in Magnaporthe oryzae
WANG Ying, JIAO Tian-lei, LIU Xiao-hong, LIN Fu-cheng , WU Wei-ren
2011, 10 (
9
): 1385-1390. DOI:
10.1016/S1671-2927(11)60131-4
Abstract
(
2095
)
PDF in ScienceDirect
Magnaporthe oryzae, a filamentous ascomycete fungus, is well known as the causal agent of rice blast. With thetechnology of suppression subtractive hybridization (SSH), it was previously found that MGG_06001 (or named MoNEM1),a gene of M. oryzae homologous to the NEM1 (nuclear envelope morphology protein 1) gene of baker’s yeast(Saccharomyces cerevisiae), is differentially expressed between the mature appressium and the conidium and mycelium.This study aimed to characterize the function of MoNEM1 gene by knocking it out using the method of target genereplacement. The ΔMonem1 mutants exhibited reduced mycelial growth and conidiation. However, disruption of MoNEM1gene does not affect the pathogenicity of M. oryzae on barley and rice.
Reference
|
Related Articles
|
Metrics
Select
Mapping of Mutant Gene prbs Controlling Poly-Row-and-Branched Spike in Barley (Hordeum vulgare L.)
HUANG Bi-guang , WU Wei-ren
2011, 10 (
10
): 1501-1505. DOI:
10.1016/S1671-2927(11)60144-2
Abstract
(
1563
)
PDF in ScienceDirect
A row-type mutant of barley named poly-row-and-branched spike (prbs) was previously obtained from a two-rowed cultivar Pudamai-2 after treated by inflorescence soaking in maize total DNA solution. The mutant produces branched spikes with irregular multiple rows. Genetic analysis indicated that the mutant phenotype was caused by a recessive gene prbs, and the PRBS locus had a recessive epistatic effect on an independent locus (denoted as Vrsx) conferring the variation of two-rowed spike vs. six-rowed spike. This study aimed to map PRBS as well as Vrsx using simple sequence repeats (SSR) markers. We developed an F2 population from a cross between the prbs mutant and a six-rowed cultivar Putianwudu for the gene mapping. As the two target loci interacted to result in a segregation ratio of two-rowed type:sixrowed type:prbs=9:3:4 in the population, we adopted a special strategy to map the two loci. PRBS was mapped between SSR markers HvLTPPB and Bmag0508A on the short arm of chromosome 3H, with distances of 24.7 and 14.3 cM to the two markers, respectively. Vrsx was mapped between SSR markers Bmag0125 and Bmag0378 on chromosome 2H, with distances of 6.9 and 15.3 cM to the two markers, respectively. This suggests that Vrsx should be the known locus Vrs1, which predominantly controls row-type variation in barley cultivars, and PRBS is a new locus related to the row type of spikes in barley.
Reference
|
Related Articles
|
Metrics