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Dietary threonine deficiency affects expression of genes involved in lipid metabolism in adipose tissues of Pekin ducks in a genotype-dependent manner
JIANG Yong, MA Xin-yan, XIE Ming, ZHOU Zheng-kui, TANG Jing, CHANG Guo-bin, CHEN Guo-hong, HOU Shui-sheng
2022, 21 (
9
): 2691-2699. DOI:
10.1016/j.jia.2022.07.011
Abstract
(
155
)
PDF in ScienceDirect
Dietary threonine (Thr) deficiency increases hepatic triglyceride content and reduces sebum and abdominal fat percentages in lean type (LT), but not in fatty type (FT) Pekin ducks. However, the molecular changes regarding the role of Thr in lipid metabolism in LT and FT ducks induced by Thr deficiency remains unknown. This study compared differential expression gene profiles related to lipid metabolism in FT and LT Pekin ducks affected by Thr deficiency. We performed transcriptomic profiling and scanned the gene expression in the liver, sebum, and abdominal fat of Pekin ducks fed either Thr-deficient or Thr-adequate diet for 21 days from 14 to 35 days of age. There were 187, 52, and 50 differentially expressed genes (DEGs) identified in the liver, sebum, and abdominal fat of LT ducks affected by Thr deficiency, of which 12, 9, and 5 genes were involved in lipid metabolism, respectively. Thr deficiency altered the expression of 27, 6, and 3 genes in FT ducks’ liver, sebum, and abdominal fat, respectively. None of the DEGs had a relationship with lipid metabolism in FT ducks. KEGG analysis showed that the DEGs in the LT ducks’ livers were enriched in lipid metabolism pathways (linolenic acid metabolism, glycerophospholipid metabolism, and arachidonic acid metabolism) and amino acid metabolism pathways (biosynthesis of amino acids, phenylalanine metabolism, β-alanine metabolism, and glycine, serine and threonine metabolisms). The DEGs in the sebum and abdominal fat of LT ducks were not enriched in lipid and amino acid metabolic pathways. Additionally, DEGs involved in lipid metabolism were found to be upregulated by Thr deficiency in LT ducks, such as malic enzyme 3 (ME3), acyl-CoA synthetase short-chain family member 2 (ACSS2) in liver, and lipase member M (LIPM) in sebum. In summary, dietary Thr deficiency regulated the gene expression involved in lipid metabolism in the liver, sebum, and abdominal fat of Pekin ducks in a genotype-dependent manner.
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Identification of eight
Berberis
species from the Yunnan-Guizhou plateau as aecial hosts for
Puccinia striiformis
f. sp.
tritici
, the wheat stripe rust pathogen
LI Si-nan, CHEN Wen, MA Xin-yao, TIAN Xia-xia, LIU Yao, HUANG Li-li, KANG Zhen-sheng, ZHAO Jie
2021, 20 (
6
): 1563-1569. DOI:
10.1016/S2095-3119(20)63327-5
Abstract
(
145
)
PDF in ScienceDirect
Puccinia striiformis
Westend. f. sp.
tritici
Erikss. (
Pst
) infects wheat and causes stripe rust. The rust is heteroecious with wheat as the primary uredinial and telial host and barberry (
Berberis
spp.) as the alternate pycnial and aecial host. More than 40
Berberis
species have been identified as alternate hosts for
Pst
, and most of these are Chinese
Berberis
species. However, little is known about
Berberis
species or their geographic distributions in the Yunnan-Guizhou plateau in southwestern China. The Yunnan-Guizhou plateau is considered to be an important and relatively independent region for the evolution of the wheat stripe rust pathogen in China because the entire disease cycle can be completed within the region. In this study, we conducted a survey of barberry plants in the Yunnan-Guizhou plateau and identified the eight
Pst
-susceptible
Berberis
species under controlled conditions, including
B. julianae
,
B. tsienii
,
B.
veitchii
,
B. wilsonae
,
B. wilsonae
var. guhtzunica,
B. franchetiana
,
B. lepidifolia
and
B. pruinosa
. These species are reported here for the first time to serve as alternate hosts for the wheat stripe rust pathogen under controlled conditions.
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Bacterial diversity and community composition changes in paddy soils that have different parent materials and fertility levels
MA Xin-ling, LIU Jia, CHEN Xiao-fen, LI Wei-tao, JIANG Chun-yu, WU Meng, LIU Ming, LI Zhong-pei
2021, 20 (
10
): 2797-2806. DOI:
10.1016/S2095-3119(20)63364-0
Abstract
(
188
)
PDF in ScienceDirect
Parent materials and the fertility levels of paddy soils are highly variable in subtropical China. Bacterial diversity and community composition play pivotal roles in soil ecosystem processes and functions. However, the effects of parent material and fertility on bacterial diversity and community composition in paddy soils are unclear. The key soil factors driving the changes in bacterial diversity, community composition, and the specific bacterial species in soils that are derived from different parent materials and have differing fertility levels are unknown. Soil samples were collected from paddy fields in two areas with different parent materials (quaternary red clay or tertiary sandstone) and two levels of fertility (high or low). The variations in bacterial diversity indices and communities were evaluated by 454 pyrosequencing which targeted the V4–V5 region of the 16S rRNA gene. The effects of parent material and fertility on bacterial diversity and community composition were clarified by a two-way ANOVA and a two-way PERMANOVA. A principal coordinate analysis (PCoA), a redundancy analysis (RDA), and multivariate regression trees (MRT) were used to assess changes in the studied variables and identify the factors affecting bacterial community composition. Co-occurrence network analysis was performed to find correlations between bacterial genera and specific soil properties, and a statistical analysis of metagenomic profiles (STAMP) was used to determine bacterial genus abundance differences between the soil samples. The contributions made by parent material and soil fertility to changes in the bacterial diversity indices were comparable, but soil fertility accounted for a larger part of the shift in bacterial community composition than the parent material. Soil properties, especially soil texture, were strongly associated with bacterial diversity. The RDA showed that soil organic carbon (SOC) was the primary factor influencing bacterial community composition. A key threshold for SOC (25.5 g kg
–1
) separated low fertility soils from high fertility soils. The network analysis implied that bacterial interactions tended towards cooperation and that copiotrophic bacteria became dominant when the soil environment improved. The STAMP revealed that copiotrophic bacteria, such as Massilia and Rhodanobacter, were more abundant in the high fertility soils, while oligotrophic bacteria, such as Anaerolinea, were dominant in low fertility soils. The results showed that soil texture played a role in bacterial diversity, but nutrients, especially SOC, shaped bacterial community composition in paddy soils with different parent materials and fertility levels.
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Glycosylation of the hemagglutinin protein of H9N2 subtype avian influenza virus influences its replication and virulence in mice
TAN Liu-gang, CHEN Zhao-kun, MA Xin-xin, HUANG Qing-hua, SUN Hai-ji, ZHANG Fan, YANG Shao-hua, XU Chuan-tian, CUI Ning
2019, 18 (
7
): 1443-1450. DOI:
10.1016/S2095-3119(19)62669-9
Abstract
(
209
)
PDF in ScienceDirect
N-Linked glycosylation of hemagglutinin (HA) has been demonstrated to regulate the virulence and receptor-binding specificity of avian influenza virus (AIV). In this study, we characterized the variation trend of naturally isolated H9N2 viruses for the potential N-linked glycosylation sites in HA proteins, and explored any important role of some glycosylation sites. HA genes of 19 H9N2 subtype AIV strains since 2001 were sequenced and analyzed for the potential glycosylation sites. The results showed that the viruses varied by losing one potential glycosylation site at residues 200 to 202, and having an additional one at residues 295 to 297 over the past few years. Further molecular and single mutation analysis revealed that the N200Q mutation lost an N-linked glycosylation at positions 200 to 202 of the HA protein and affected the human-derived receptor affinity. We further found that this N-linked glycosylation increased viral productivity in the lung of the infected mice. These findings provide a novel insight on understanding the determinants of host adaption and virulence of H9N2 viruses in mammals.
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Application of virus-induced gene silencing for identification of FHB resistant genes
FAN Yan-hui, HOU Bing-qian, SU Pei-sen, WU Hong-yan, WANG Gui-ping, KONG Ling-rang, MA Xin, WANG Hong-wei
2019, 18 (
10
): 2183-2192. DOI:
10.1016/S2095-3119(18)62118-5
Abstract
(
136
)
PDF in ScienceDirect
Virus-induced gene silencing (VIGS) showed several advantages to identify gene functions such as short experimental cycle, more broad hosts, etc. In this study, the feasibility and efficiency of employing Barley stripe mosaic virus (BSMV)-based VIGS system to evaluate Fusarium head blight (FHB) resistance were explored in wheat. With variable conditions tested, it showed that the maximal silencing efficiency 78% on spike was obtained when the recombinant BSMV was inoculated on flag leaf at flagging stage. However, the plant may reduce its own immunity to FHB when inoculated with BSMV. To induce this impact, different
Fusarium graminearum
strains were tested and SF06-1 strain was selected for FHB resistance evaluation. Using this system,
TaAOC
,
TaAOS
, and
TaOPR3
involved in jasmonic acid (JA) signaling pathway were identified to positively regulate FHB resistance, which was underpinned by the results when silencing TaAOS in wheat by stable transgenic plants.
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Multi-functional roles of
TaSSI2
involved in Fusarium head blight and powdery mildew resistance and drought tolerance
HU Li-qin, MU Jing-jing, SU Pei-sen, WU Hong-yan, YU Guang-hui, WANG Gui-ping, WANG Liang, MA Xin, LI An-fei, WANG Hong-wei, ZHAO Lan-fei, KONG Ling-rang
2018, 17 (
2
): 368-380. DOI:
10.1016/S2095-3119(17)61680-0
Abstract
(
692
)
PDF in ScienceDirect
The mutation of the gene encoding a stearoyl-acyl carrier protein fatty acid desaturase (
ssi2
) has been proved to enhance pathogen resistance in several plants, while it’s potential to regulate biotic and abiotic stresses in wheat is still unclear. In this study, we cloned
TaSSI2
gene in wheat and provided several evidences of its involvement in multiple biological functions. By using barley stripe mosaic virus (BSMV)-induced gene silencing (VIGS) in wheat, it was found that
TaSSI2
negatively regulated both powdery mildew and Fusarium head blight (FHB) resistance, which was consistent with the phenotype observed in knock-out mutants of Kronos. The expression of
TaSSI2
was down-regulated by
in
vitro
treatments of methyl jasmonate (MeJA), but positively regulated by salicylic acid (SA) and abscisic acid (ABA), implying the cross-talk between different hormone signaling pathways involved in wheat to regulate biotic stresses is still to be elucidated. Furthermore, the up-regulated expression of
PR4
and
PR5
indicated that
TaSSI2
probably regulated FHB resistance by depressing the SA signaling pathway in wheat. In addition, the over-expression of
TaSSI2
increased the content of linolenic acid (18:3) and subsequently enhanced drought tolerance of transgenic
Brachypodium
. This phenomenon might be associated with its subcellular localization in the whole cytosol, partly overlapping with Golgi apparatus and the secreted vesicles. As a stearoyl-acyl carrier protein fatty acid desaturase,
TaSSI2
was proposed to be involved in cell lipid metabolism and carried targets out of the cell from membrane or wax synthesis, resulting in enhanced drought tolerance in plant.
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Integrated management strategy for improving the grain yield and nitrogen-use efficiency of winter wheat
XU Hai-cheng, DAI Xing-long, CHU Jin-peng, WANG Yue-chao, YIN Li-jun, MA Xin, DONG Shu-xin, HE Ming-rong
2018, 17 (
2
): 315-327. DOI:
10.1016/S2095-3119(17)61805-7
Abstract
(
791
)
PDF in ScienceDirect
Understanding of how combinations of agronomic options can be used to improve the grain yield and nitrogen use efficiency (NUE) of winter wheat is limited. A three-year experiment involving four integrated management strategies was conducted from 2013 to 2015 in Tai’an, Shandong Province, China, to evaluate changes in grain yield and NUE. The integrated management treatments were as follows: current practice (T1); improvement of current practice (T2); high-yield management (T3), which aimed to maximize grain yield regardless of the cost of resource inputs; and integrated soil and crop system management (T4) with a higher seeding rate, delayed sowing date, and optimized nutrient management. Seeding rates increased by 75 seeds m
–2
with each treatment from T1 (225 seeds m
–2
) to T4 (450 seeds m
–2
). The sowing dates were delayed from T1 (5th Oct.) to T2 and T3 (8th Oct.), and to T4 treatment (12th Oct.). T1, T2, T3, and T4 received 315, 210, 315, and 240 kg N ha
–1
, 120, 90, 210 and 120 kg P
2
O
5
ha
–1
, 30, 75, 90, and 45 kg K
2
O ha
–1
, respectively. The ratio of basal application to topdressing for T1, T2, T3, and T4 was 6:4, 5:5, 4:6, and 4:6, respectively, with the N topdressing applied at regreening for T1 and at jointing stage for T2, T3, and T4. The P fertilizers in all treatments were applied as basal fertilizer. The K fertilizer for T1 and T2 was applied as basal fertilizer while the ratio of basal application to topdressing (at jointing stage) of K fertilizer for both T3 and T4 was 6:4. T1, T2, T3, and T4 were irrigated five, four, four and three times, respectively. Treatment T3 produced the highest grain yield among all treatments over three years and the average yield was 9 277.96 kg ha
–1
. Grain yield averaged across three years with the T4 treatment (8 892.93 kg ha
–1
) was 95.85% of that with T3 and was 21.72 and 6.10% higher than that with T1 (7 305.95 kg ha
–1
) and T2 (8 381.41 kg ha
–1
), respectively. Treatment T2 produced the highest NUE of all the integrated treatments. The NUE with T4 was 95.36% of that with T2 and was 51.91 and 25.62% higher than that with T1 and T3, respectively. The N uptake efficiency (UPE) averaged across three years with T4 was 50.75 and 16.62% higher than that with T1 and T3, respectively. The N utilization efficiency (UTE) averaged across three years with T4 was 7.74% higher than that with T3. The increased UPE with T4 compared with T3 could be attributed mostly to the lower available N in T4, while the increased UTE with T4 was mainly due to the highest N harvest index and low grain N concentration, which consequently led to improved NUE. The net profit for T4 was the highest among four treatments and was 174.94, 22.27, and 28.10% higher than that for T1, T2, and T3, respectively. Therefore, the T4 treatment should be a recommendable management strategy to obtain high grain yield, high NUE, and high economic benefits in the target region, although further improvements of NUE are required.
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The status and distribution characteristics of residual mulching film in Xinjiang, China
ZHANG Dan, LIU Hong-bin, HU Wan-li, QIN Xiao-hui, MA Xing-wang, YAN Chang-rong, WANG Hongyuan
2016, 15 (
11
): 2639-2646. DOI:
10.1016/S2095-3119(15)61240-0
Abstract
(
1547
)
PDF in ScienceDirect
Pollution of residual plastic film in arable lands is a severe problem in China. In this study, the status of residual film and influential factors were investigated using the methods of farm survey in combination with questionnaires and quadrat sampling at a large number of field sites in Xinjiang Uygur Autonomous Region, China. The results showed that the amount of film utilization increased largely and reached to 1.8×10
5
t in 2013. Similarly, the mulching area also substantially increased in recent decades, and reached to 2.7×10
5
ha in the same year. According to the current survey, 60.7% of the sites presented a greater mulch residue than the national film residue standard (75 kg ha
–1
), and the maximum residual amount reached 502.2 kg ha
–1
in Turpan, Xinjiang. The film thickness, the mulching time and the crop type all influenced mulch residue. The thickness of the film had significantly negative correlation with the amount of residual film (
P
<0.05), while the mulching years had significantly positive correlation with it (
P
<0.05). The total amount of residual film in Xinjiang was 3.43×10
5
t in 2011, which accounted for 15.3% of the cumulative dosage of mulching. Among all the crops, the cotton fields had the largest residual amount of mulch film (158.4 kg ha
–1
), and also the largest contribution (2.6×10
5
tons) to the total amount of residual film in Xinjiang.
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Functional analysis of a wheat pleiotropic drug resistance gene involved in Fusarium head blight resistance
WANG Gui-ping, HOU Wen-qian, ZHANG Lei, WU Hong-yan, ZHAO Lan-fei, DU Xu-ye, MA Xin, LI An-fei, WANG Hong-wei, KONG Ling-rang
2016, 15 (
10
): 2215-2227. DOI:
10.1016/S2095-3119(16)61362-X
Abstract
(
1708
)
PDF in ScienceDirect
The pleiotropic drug resistance (PDR) sub-family of adenosine triphosphate (ATP)-binding cassette (ABC) transporter had been reported to participate in diverse biological processes of plant. In this study, we cloned three novel PDR genes in Fusarium head blight (FHB) resistant wheat cultivar Ning 7840, which were located on wheat chromosomes 6A, 6B and 6D. In phylogeny, these genes were members of cluster I together with
AePDR7
and
BdPDR7
. Subcellular localization analysis showed that
TaPDR7
was expressed on the plasmalemma. The quantitative real time PCR (RT-PCR) analysis showed that this gene and its probable orthologues in chromosomes 6B and 6D were both up-regulated sharply at 48 h after infected by
Fusarium graminearum
and
trichothecene deoxynivalenol
(DON) in spike. When knocking down the transcripts of all
TaPDR7
members by barely stripe mosaic virus-induced gene silencing (BSMV-VIGS) system, it could promote the
F. graminearum
hyphae growth and made larger pathogen inoculation points in Ning 7840, which suggested that
TaPDR7
might play an important role in response to
F. graminearum
. Although salicylic acid (SA), methyl jasmonate (MeJA) and abscisic acid (ABA) had been reported to possibly regulate wheat FHB resistance, here, we found that the three members of
TaPDR7
were negatively regulated by these three hormones but positively regulated by indoleacetic acid (IAA).
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Cloning and characterization of a novel UDP-glycosyltransferase gene induced by DON from wheat
MA Xin, DU Xu-ye, LIU Guo-juan, YANG Zai-dong, HOU Wen-qian, WANG Hong-wei, FENG De-shun
2015, 14 (
5
): 830-838. DOI:
10.1016/S2095-3119(14)60857-1
Abstract
(
2424
)
PDF in ScienceDirect
Fusarium head blight (FHB), caused primarily by Fusarium graminearum, is a destructive disease of wheat throughout the world. However, the mechanisms of host resistance to FHB are still largely unclear. Deoxynivalenol (DON) produced by F. graminearum which enhances the pathogen to spread could be converted into inactive form D3G by UDP-glycosyltransferases (UGTs). A DON responsive UGT gene, designated as TaUGT4, was first cloned from wheat in this study. The putative open reading frame (ORF) of TaUGT4 was 1 386 bp, encoding 461 amino acids protein. TaUGT4 was placed on chromosome 2D using a set of nulli-tetrasomic lines of wheat cultivar Chinese Spring (CS). When fused with eGFP at C terminal, TaUGT4 was shown to localize in cytoplasm of the transformed tobacco cells. The transcriptional analysis revealed that TaUGT4 was strongly induced by F. graminearum or DON in both of FHB-resistant cultivar Sumai 3 and susceptible cultivar Kenong 199, especially in Sumai 3 under DON treatment. Similar increase of TaUGT4 expression was observed in Sumai 3 and Kenong 199 in response to salicylic acid (SA) treatment. But interestingly, the transcripts level of TaUGT4 in Sumai 3 showed significantly higher than that in Kenong 199 after treated with methyl jasmonate (MeJA). According to the expression patterns, TaUGT4 might lead to different effects between FHB-resistant genotype and susceptible genotype in the process against F. graminearum inoculation. It had also been discussed in this paper that JA signaling pathway might play a significant role in the resistance against F. graminearum compared to SA signaling pathway.
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Relative bioavailability of tribasic zinc sulfate for broilers fed a conventional corn-soybean meal diet
LI Wen-xiang, MA Xin-yan, LU Lin, ZHANG Li-yang, LUO Xu-gang
2015, 14 (
10
): 2042-2049. DOI:
10.1016/S2095-3119(15)61033-4
Abstract
(
1656
)
PDF in ScienceDirect
An experiment was carried out to investigate the relative bioavailability of tribasic zinc (Zn) sulfate relative to Zn sulfate for broilers fed a conventional corn-soybean meal diet. A total of 504 1-d-old Arbor Acres commercial male chicks were randomly assigned by body weight of birds to one of seven treatments involving a 2×3 factorial arrangement with three levels of added Zn (30, 60, or 90 mg of Zn kg–1) and two Zn sources (tribasic Zn sulfate and Zn sulfate) plus a control with no added Zn for an experimental phase of 14 d. Plasma Zn, tibia ash Zn, pancreas Zn, and pancreas metallothionein (MT) messenger RNA (mRNA) were analyzed at 6 or 14 d of age post-hatching. The results showed that plasma Zn, tibia ash Zn, pancreas Zn, and pancreas MT mRNA increased linearly (P<0.002) as dietary Zn concentration increased at 6 or 14 d of age. The R2 for a linear model was greater on d 6 than on d 14 for the above 4 responsive criteria, and among these indices, the fitting of the tibia ash Zn concentration was the best (R2=0.99). Therefore, based on slope ratios from the multiple linear regressions of the above 4 indices of the birds at 6 d of age on daily intake of dietary Zn, the bioavailabilities of tribasic Zn sulfate relative to Zn sulfate (100%) were 95.6% (P=0.18), 83.5% (P=0.01), 87.9% (P=0.53), and 75.9% (P=0.38) for the tibia ash Zn, pancreas Zn, plasma Zn, and pancreas MT mRNA, respectively. The results indicated that generally, Zn from tribasic Zn sulfate was as available as Zn from Zn sulfate for broilers.
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Effects of Chronic Stress of Cadmium and Lead on Anatomical Structure of Tobacco Roots
YUAN Zu-li, XIONG Shu-ping, LI Chun-ming , MA Xin-ming
2011, 10 (
12
): 1941-1948. DOI:
10.1016/S1671-2927(11)60195-8
Abstract
(
2007
)
PDF in ScienceDirect
Cadmium (Cd2+) is one of the major widespread environmental pollutants, and can cause serious problems to all organisms.
Lead (Pb2+) is another wide spread dangerous heavy metal. Tobacco is a popular growing economic crop in China. Most
tobacco growing region soils contain excessive Cd2+ and Pb2+. To assess anatomic changes of tobacco roots under Cd2+,
Pb2+, and Cd2++Pb2+ chronic stress, a pot experiment was carried out in field. The tobacco seedlings with 6 leaves were
transplanted to pots in which soil was placed. The amounts of Cd2+ added to soil were 0, 3, 6, 10, 30, 60, and 100 mg kg-1
dry soil. The amounts of Pb2+ added to soil were 0, 150, 300, 450, 600, 750, and 1 000 mg kg-1 dry soil. The amounts of
Cd2++Pb2+ added to soil were 0+0, 3+150, 6+300, 10+450, 30+600, 60+750, and 100+1 000 mg kg-1 dry soil. The contents of Cd2+ and Pb2+ in root systems were determined by inductively coupled plasma, and the anatomical structure was studied by method of paraffin sectioning. The results revealed that the amounts of exchangeable Cd2+ and Pb2+ and carbonate bound Cd2+ and Pb2+ in soil increased with the amounts of Cd2+ and Pb2+ added to soil, and the contents of both Cd2+ and Pb2+ in roots were significantly increased along with stress time and the amounts of Cd2+ and Pb2+ added to soil. The growing of tobacco in Cd2+ and Cd2++Pb2+ polluted soil for 50, 100, and 150 d resulted in some abnormal external morphological and anatomical changes in ripe region of lateral roots. All the abnormal roots had abnormal vascular cylinders, and the ratio of abnormal external morphological and anatomical changes of roots positively correlated with the Cd2+ contents in roots and stress time. While, there were no abnormal external morphological and anatomical changes of roots under Pb2+ stress. It was suggested that Cd2+ stress could cause abnormal anatomic changes of roots, but Pb2+ stress could not.
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