Although returning crop residue to fields is a recommended measure for improving soil carbon (C) stocks in agroecosystems, the response of newly formed soil C (NFC) to the integrated supply of residue and nutrients and the microbial mechanisms have not been fully understood. Therefore, an 84-day incubation experiment was conducted to ascertain the microbial mechanisms that underpin the NFC response to inputs of residue and nitrogen (N), phosphorus (P), and sulfur (S) in two black soils. The results showed that adding residue alone accelerated microbial nutrient mining, which was supported by decreases of 8–16% in the ratios of C:N and C:P enzyme activities (relative to soils with nutrient inputs). The NFC amounts increased from 1155.9 to 1722.4 mg kg⁻¹ soil in Gongzhuling and increased from 725.1 to 1067.5 mg kg⁻¹ soil in Hailun as the levels of nutrient supplementation increased. Boosted regression tree analysis suggested that β-glucosidase (BG), acid phosphatase (AP), microbial biomass C (MBC), and Acidobacteria accounted for 27.8, 18.5, 14.7, and 8.1%, respectively, of the NFC in Gongzhuling and accounted for 25.9, 29.5, 10.1, and 13.9%, respectively, of the NFC in Hailun. Path analysis determined that Acidobacteria positively influenced NFC both directly and indirectly by regulating BG, AP, and MBC, in which MBC acquisition was regulated more by AP. The intensity of NFC was lower in Hailun soil than in Gongzhuling soil and was directly affected by AP, thereby indicating the importance of soil status (e.g., SOC and pH) in determining NFC. Overall, our results reveal the response of NFC to supplementation by N, P, and S, which depends on Acidobacteria and Proteobacteria, and their investment in BG and AP in residue-amended soil.

Soil microbial biomass nitrogen (MBN) contains the largest proportion of biologically active nitrogen (N) in soil, and is considered as a crucial participant in soil N cycling.  Agronomic management practices such as crop rotation and mono-cropping systems, dramatically affect MBN in agroecosystems.  However, the influence of crop rotation and mono-cropping in agroecosystems on MBN remains unclear.  A meta-analysis based on 203 published studies was conducted to quantify the effect of crop rotation and mono-cropping systems on MBN under synthetic N fertilizer application.  The analysis showed that crop rotation significantly stimulated the response ratio (RR) of MBN to N fertilization and this parameter reached the highest levels in upland-fallow rotations.  Upland mono-cropping did not change the RR of MBN to N application, however, the RR of MBN to N application in paddy mono-cropping increased.  The difference between crop rotation and mono-cropping systems appeared to be due to the various cropping management scenarios, and the pattern, rate and duration of N addition.  Crop rotation systems led to a more positive effect on soil total N (TN) and a smaller reduction in soil pH than mono-cropping systems.  The RR of MBN to N application was positively correlated with the RR of mineral N only in crop rotation systems and with the RR of soil pH only in mono-cropping systems.  Combining the results of Random Forest (RF) model and structural equation model showed that the predominant driving factors of MBN changes in crop rotation systems were soil mineral N and TN, while in mono-cropping systems the main driving factor was soil pH.  Overall, our study indicates that crop rotation can be an effective way to enhance MBN by improving soil N resources, which promote the resistance of MBN to low pH induced by intensive synthetic N fertilizer application.

Black soil is one of the most precious soil resources on earth because it has abundant carbon stocks and a relatively high production capacity.  However, decreasing organic matter after land reclamation, and the effects of long-term inputs of organic carbon have made it less fertile black soil in Northeast China.  Straw return could be an effective method for improving soil organic carbon (SOC) sequestration in black soils.  The objective of this study was to evaluate whether straw return effectively increases SOC sequestration.  Long-term field experiments were conducted at three sites in Northeast China with varying latitudes and SOC densities.  Study plots were subjected to three treatments: no fertilization (CK); inorganic fertilization (NPK); and NPK plus straw return (NPKS).  The results showed that the SOC stocks resulting from NPKS treatment were 4.0 and 5.7% higher than those from NPK treatment at two sites, but straw return did not significantly affect the SOC stocks at the third site.  Furthermore, at higher SOC densities, the NPKS treatment resulted in significantly higher soil carbon sequestration rates (CSR) than the NPK treatment.  The equilibrium value of the CSR for the NPKS treatment equated to cultivation times of 17, 11, and 8 years at the different sites.  Straw return did not significantly increase the SOC stocks in regions with low SOC densities, but did enhance the C pool in regions with high SOC densities.  These results show that there is strong regional variation in the effects of straw return on the SOC stocks in black soil in Northeast China.  Additional cultivations and fertilization practices should be used when straw return is considered as an approach for the long-term improvement of the soil organic carbon pool.

DNA sequences of fatty acid elongase 1 genes FAE1.1 (EA) and FAE1.2 (EC) were isolated and characterized for 30 commercialized low erucic acid rapeseed (LEAR) cultivars in China. Four types of independent mutation leading to low erucic acid trait were found, i.e., a single-base transition (eA1), a two-base deletion (eC2) and four-base deletion (eC4) as well as single-base transition with a four-base deletion (eA*). Three genotypes, i.e., eA1eA1eC2eC2, eA1eA1eC4eC4 and eA*eA*eC4eC4 were responsible for LEA content in storage lipids of different rapeseed cultivars. Most of the LEAR cultivars had a genotype of eA1eA1eC2eC2, which were descended from the first LEAR cultivar, Oro. Yeast expression analysis revealed that two-base-pair (AA) deletion (eC2) at the base sites of 1422–1423 in the C genome FAE1 gene resulted in the absence of the condensing enzyme and led to the failure to produce erucic acid. Coexpression of FAE1 and ketoacyl-CoA reductase (KCR) or enoyl-CoA reductase (ECR) was found in high erucic acid rapeseed (HEAR) but not in LEAR (eA1eA1eC2eC2 or eA1eA1eC4eC4). Moreover, KCR and ECR were still coordinately regulated in eA1eA1eC2eC2 or eA1eA1eC4eC4 genotypes, suggesting that the expression of two genes was tightly linked. In addition, specific detection methods were developed by high-resolution melting curve analysis in order to detect eA1 and eC4 .

Phosphorus (P) is an important macronutrient for plant but can also cause potential environmental risk. In this paper, we studied the long-term fertilizer experiment (started 1980) to assess the soil P dynamic, balance, critical P value and the crop yield response in Taihu Lake region, China. To avoid the effect of nitrogen (N) and potassium (K), only the following treatments were chosen for subsequent discussion, including: C0 (control treatment without any fertilizer or organic manure), CNK treatment (mineral N and K only), CNPK (balanced fertilization with mineral N, P and K), MNK (integrated organic manure and mineral N and K), and MNPK (organic manure plus balanced fertilization). The results revealed that the response of wheat yield was more sensitive than rice, and no significant differences of crop yield had been detected among MNK, CNPK and MNPK until 2013. Dynamic and balance of soil total P (TP) and Olsen-P showed soil TP pool was enlarged significantly over consistent fertilization. However, the diminishing marginal utility of soil Olsen-P was also found, indicating that high-level P application in the present condition could not increase soil Olsen-P contents anymore. Linear-linear and Mitscherlich models were used to estimate the critical value of Olsen-P for crops. The average critical P value for rice and wheat was 3.40 and 4.08 mg kg–1, respectively. The smaller critical P value than in uplands indicated a stronger ability of P supply for crops in this paddy soil. We concluded that no more mineral P should be applied in rice-wheat system in Taihu Lake region if soil Olsen-P is higher than the critical P value. The agricultural technique and management referring to activate the plant-available P pool are also considerable, such as integrated use of low-P organic manure with mineral N and K.

To characterize the DNA rearrangement of both the T-DNA region and the genomic insertion site during T-DNA insertion, the Genomewalker strategy was used to isolate the junctions between the inserted DNA and the plant genomic DNA in six rapeseed events as well as the genomic DNA at the sites before integration. During transformation in each of the six events, portions of both the right border (RB) and left border (LB) regions of the T-DNA were deleted, ranging from a 7 nucleotide deletion of the LB repeats in event RF1 to a 207 bp deletion of the LB region in event RF2. For the six events, T-DNA integration resulted in a deletion at the target site spanning less than 100 bp. Sequence analysis indicated that the T-DNA was integrated into the coding region of various native rapeseed genes in events RF1 and RF2. Duplications of the genomic DNA target site were observed in events RF2, RF3 and Topas 19/2. And multimerization of transgenes was found in event Topas 19/2, in which, the T-DNA was integrated as a head-to-head (RB-to-RB) concatemer into the recipient genome. In event MS1, chromosomal translocation or a large target-site deletion may have occurred during T-DNA integration, which was identified due to a failure to amplify the presumptive insertion site based on the flanking rapeseed DNA sequences. Our results provide comprehensive data concerning transgene organization and the genomic context of the T-DNA in six rapeseed events, which can aid in the developing of insert fingerprinting and the monitoring of long-term genetic stability and potential unintended effects of transgenic events.

Long-chain acyl-Coenzyme A (CoA) synthetases (LACSs) catalyze the formation of long-chain acyl-CoA, and play important roles in fatty acid metabolism including phospholipids, triacylglycerol (TAG) biosynthesis and fatty acid β-oxidation. Here, we report the characterization of a LACS gene from Brassica napus. It is highly homologous to Arabidopsis LACS4 and thus designated as BnLACS4. The cloned gene BnLACS4 could complement a LACS-deficient yeast strain YB525. It is mainly expressed in flowers and developing seeds where lipid biosynthesis is at high rate in Brassica napus. When transiently expressed in tobacco leaves, BnLACS4 is localized in endoplasmic reticulum (ER), the common site for eukaryotic pathway of lipid biosynthesis. Expression of BnLACS4 in the yeast strain pep4 increased its lipid content. Taken together, our results suggest that BnLACS4 may be involved in lipid biosynthesis in B. napus.

Development of new technologies for evaluating genetically modified (GM) crops has revealed that there are unintended insertions and expression changes in GM crops. Profiling techniques are non-targeted approaches and are capable of detecting more unintended changes in GM crops. Here, we report the application of a comparative proteomic approach to investigate the protein profile differences between a GM rice line, which has a lysine-rich protein gene, and its non-transgenic parental line. Proteome analysis by two-dimensional gel electrophoresis (2-DE) and mass spectrum analysis of the seeds identified 22 differentially expressed protein spots. Apart from a number of glutelins that were detected as targeted proteins in the GM line, the majority of the other changed proteins were involved in carbohydrate metabolism, protein synthesis and stress responses. These results indicated that the altered proteins were not associated with plant allergens or toxicity.