The FW2.2-like (FWL) gene family has been extensively investigated across various species, revealing conserved functions among certain members in organ development, especially in regulating fruit size. Therefore, for species with limited research foundations, such as Chinese jujube, analyzing this gene family serves as an effective strategy for identifying candidate genes for fruit size. In this study, twenty ZjFWL genes were identified. Their chromosomal distribution, phylogenetic relationships, gene structure, evolutionary dynamics, expression patterns, and cis-acting elements in their promoters were comprehensively analyzed. Natural variation analysis of the ZjFWL10 sequence revealed a significant correlation between a seven-base pair deletion in the conserved domain and the size of jujube fruits. To validate the functional implications of the seven-base pair deletion genotype, we conducted heterologous overexpression experiments in tomatoes, generating three overexpression lines. Comparative analysis with the wild-type revealed a significant reduction in fruit size, coupled with a notable increase in plant height, in the overexpressed lines. It is speculated that this gene may play a crucial role in the nutritional allocation of jujube, ultimately influencing fruit size. These findings provide crucial insights into the mechanisms governing fruit size regulation and serve as valuable references for genetic improvement efforts targeting jujube fruit size.