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Effect of delayed sowing on grain number, grain weight, and protein concentration of wheat grains at specific positions within spikes
CHU Jin-peng, GUO Xin-hu, ZHENG Fei-na, ZHANG Xiu, DAI Xing-long, HE Ming-rong
2023, 22 (8): 2359-2369.   DOI: 10.1016/j.jia.2023.02.002
Abstract283)      PDF in ScienceDirect      

Delays in sowing have significant effects on the grain yield, yield components, and grain protein concentrations of winter wheat.  However, little is known about how delayed sowing affects these characteristics at different positions in the wheat spikes.  In this study, the effects of sowing date were investigated in a winter wheat cultivar, Shannong 30, which was sown in 2019 and 2020 on October 8 (normal sowing) and October 22 (late sowing) under field conditions.  Delayed sowing increased the partitioning of 13C-assimilates to spikes, particularly to florets at the apical section of a spike and those occupying distal positions on the same spikelet.  Consequently, the increase in grain number was the greatest for the apical sections, followed by the basal and central sections.  No significant differences were observed between sowing dates in the superior grain number in the basal and central sections, while the number in apical sections was significantly different.  The number of inferior grains in each section also increased substantially in response to delayed sowing.  The average grain weights in all sections remained unchanged under delayed sowing because there were parallel increases in grain number and 13C-assimilate partitioning to grains at specific positions in the spikes.  Increases in grain number m–2 resulted in reduced grain protein concentrations as the limited nitrogen supply was diluted into more grains.  Delayed sowing caused the greatest reduction in grain protein concentration in the basal sections, followed by the central and apical sections.  No significant differences in the reduction of the grain protein concentration were observed between the inferior and superior grains under delayed sowing.  In conclusion, a 2-week delay in sowing improved grain yield through increased grain number per spike, which originated principally from an increased grain number in the apical sections of spikes and in distal positions on the same spikelet.  However, grain protein concentrations declined in each section because of the increased grain number and reduced N uptake.

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African swine fever and meat prices fluctuation: An empirical study in China based on TVP-VAR model
LI Hui-shang, HU Chen-pei, LÜ Zheng, LI Mei-qi, GUO Xin-zhu
2021, 20 (8): 2289-2301.   DOI: 10.1016/S2095-3119(20)63307-X
Abstract267)      PDF in ScienceDirect      
frican swine fever (ASF), a fatal disease outbroken in China in August 2018, has widely attracted social concern especially in the information era.  The occurrence of ASF led to an imbalance between supply and demand in pork and other meat markets.  As a result, meat prices fluctuated greatly during the past year in 2019.  To measure ASF quantitatively, the internet public concern index about ASF was created using web crawler methods.  The relationships between ASF and meat prices were analyzed based on time-varying parameter vector auto-regressive (TVP-VAR) model.  The results showed that there were some differences in the impact size, direction and duration of ASF on the prices of pork, chicken, beef and mutton, and the characteristics of time variability and heterogeneity were obvious.  At the same time, the impact of ASF on meat prices is not consistent with the trend and degree of ASF.  The impulse intensity is strongly correlated with the strength and duration of ASF, and it is generally weak in the early stage and much stronger in the middle and late periods.  The results indicate that macro regulations, monitoring and early-warning system, standardizing production and circulation, and the public opinion monitoring and guidance about ASF should be given more attention in future to stabilize the market expectations and to promote a smooth functioning of the livestock markets.
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Development and application of microsatellite markers within transcription factors in flare tree peony (Paeonia rockii) based on next-generation and single-molecule long-read RNA-seq
LIU Na, CHENG Fang-yun, GUO Xin, ZHONG Yuan
2021, 20 (7): 1832-1848.   DOI: 10.1016/S2095-3119(20)63402-5
Abstract130)      PDF in ScienceDirect      
Tree peonies native to China are a precious crop with ornamental, medicinal and edible oil properties, of which flare tree peony (Paeonia rockii) is one of the most significant germplasms in Paeonia.  The development and application of expressed sequence tag-simple sequence repeat (EST-SSR) markers are very valuable for genetic and breeding applications, but EST-SSR resources for the genus Paeonia are still limited.  In this study, we first reported the development of SSRs within transcription factors (TFs) in P. rockii based on next-generation sequencing (NGS) and single-molecule long-read sequencing (SMLRS).  A total of 166 EST-SSRs containing six nucleotide repeat types were identified from 959 candidate TFs associated with yield, with an average of one SSR per 5.83 unigenes.  In total, 102 (61.45%) pairs of primers produced amplification products in the two RNA-seq cultivars.  Among them, 58 (56.86%) pairs of primers from 18 gene families (AP2, bHLH, HSF, etc.) were identified to be polymorphic both in the parents of a linkage mapping population and in eight randomly selected accessions of P. rockii.  Further, the 58 EST-SSRs indicated a high level of informativeness with PIC values ranging from 0.32 to 0.91 (mean 0.70) after assessment in 37 tree peony accessions.  Transferability studies indicated that the amplification ratio of the 58 pairs of primers ranged from 89.66 to 100% across seven species of Paeonia.  In addition, a genetic relationship study was performed in 62 accessions.  Cluster analysis using the neighbour-joining (NJ) tree demonstrated that major clusters corresponded to the known pedigree trees.  Taken together, these newly developed EST-SSRs have a potential use in the conservation of tree peony germplasm and marker-assisted selection (MAS) breeding.
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Protective efficacy of an H5/H7 trivalent inactivated vaccine produced from Re-11, Re-12, and H7-Re2 strains against challenge with different H5 and H7 viruses in chickens
ZENG Xian-ying, CHEN Xiao-han, MA Shu-jie, WU Jiao-jiao, BAO Hong-mei, PAN Shu-xin, LIU Yan-jing, DENG Guo-hua, SHI Jian-zhong, CHEN Pu-cheng, JIANG Yong-ping, LI Yan-bing, HU Jing-lei, LU Tong, MAO Sheng-gang, GUO Xing-fu, LIU Jing-li, TIAN Guo-bin, CHEN Hua-lan
2020, 19 (9): 2294-2300.   DOI: 10.1016/S2095-3119(20)63301-9
Abstract215)      PDF in ScienceDirect      
We developed an H5/H7 trivalent inactivated vaccine by using Re-11, Re-12, and H7-Re2 vaccine seed viruses, which were generated by reverse genetics and derived their HA genes from A/duck/Guizhou/S4184/2017(H5N6) (DK/GZ/S4184/17) (a clade 2.3.4.4d virus), A/chicken/Liaoning/SD007/2017(H5N1) (CK/LN/SD007/17) (a clade 2.3.2.1d virus), and A/chicken/Guangxi/SD098/2017(H7N9) (CK/GX/SD098/17), respectively.  The protective efficacy of this novel vaccine and that of the recently used H5/H7 bivalent inactivated vaccine against different H5 and H7N9 viruses was evaluated in chickens.  We found that the H5/H7 bivalent vaccine provided solid protection against the H7N9 virus CK/GX/SD098/17, but only 50–60% protection against different H5 viruses.  In contrast, the novel H5/H7 trivalent vaccine provided complete protection against the H5 and H7 viruses tested.  Our study underscores the importance of timely updating of vaccines for avian influenza control.
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Discovery of leaf region and time point related modules and genes in maize (Zea mays L.) leaves by Weighted Gene Co-expression Network analysis (WGCNA) of gene expression profiles of carbon metabolism
WANG Jing-lu, ZHANG Ying, PAN Xiao-di, DU Jian-jun, MA Li-ming, GUO Xin-yu
2019, 18 (2): 350-360.   DOI: 10.1016/S2095-3119(18)62029-5
Abstract290)      PDF (1658KB)(274)      
Maize (Zea mays L.) yield depends not only on the conversion and accumulation of carbohydrates in kernels, but also on the supply of carbohydrates by leaves.  However, the carbon metabolism process in leaves can vary across different leaf regions and during the day and night.  Hence, we used Weighted Gene Co-expression Network analysis (WGCNA) with the gene expression profiles of carbon metabolism to identify the modules and genes that may associate with particular regions in a leaf and time of day.  There were a total of 45 samples of maize leaves that were taken from three different regions of a growing maize leaf at five time points.  Robust Multi-array Average analysis was used to pre-process the raw data of GSE85963 (accession number), and quality control of data was based on Pearson correlation coefficients.  We obtained eight co-expression network modules.  The modules with the highest significance of association with LeafRegion and TimePoint were selected.  Functional enrichment and gene-gene interaction analyses were conducted to acquire the hub genes and pathways in these significant modules.  These results can support the findings of similar studies by providing evidence of potential module genes and enriched pathways associated with leaf development in maize.
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Identification of the strain-specifically truncated nonstructural protein 10 of porcine reproductive and respiratory syndrome virus in infected cells
ZHANG Zhi-bang, XU Lei, WEN Xue-xia, DONG Jian-guo, ZHOU Lei, GE Xin-na, YANG Han-chun, GUO Xin
2018, 17 (05): 1171-1180.   DOI: 10.1016/S2095-3119(17)61896-3
Abstract522)      PDF (4491KB)(541)      
The nonstructural protein 10 (nsp10) of porcine reproductive and respiratory syndrome virus (PRRSV) encodes for helicase which plays a vital role in viral replication.  In the present study, a truncated form of nsp10, termed nsp10a, was found in PRRSV-infected cells and the production of nsp10a was strain-specific.  Mass spectrometric analysis and deletion mutagenesis indicated that nsp10a may be short of about 70 amino acids in the N terminus of nsp10.  Further studies by rescuing recombinant viruses showed that the Glu-69 in nsp10 was the key amino acid for nsp10a production.  Finally, we demonstrated that nsp10a exerted little influence on the growth kinetics of PRRSV in vitro. 
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Comparative proteomics analysis of maize (Zea mays) leaves infected by small brown planthopper (Laodelphax striatellus)
ZHAO Mei-ai, LEI Zhen, PEI Yu-he, SHAO Xiao-yu, GUO Xin-mei, SONG Xi-yun?
2018, 17 (04): 796-805.   DOI: 10.1016/S2095-3119(17)61824-0
Abstract698)      PDF in ScienceDirect      
Maize rough dwarf disease (MRDD) is a viral disease caused by brown planthopper infestation, and leads to great yield loss, especially in China.  Comparative proteomics was performed using maize inbred line Zheng 58 and LN 287.  MRDD pathogen was detected as rice black-streaked dwarf virus (RBSDV) by quantitative real time PCR (qRT-PCR) in Shandong Province, China.  The modified trichloroacetic acid (TCA)/acetone method was used for soluble protein extraction from leaves.  Two-dimensional electrophoresis (2-DE) analysis was performed on 24-cm long, pH 4-7 linear immobilized pH gradient (IPG) strips, and gels were stained with silver and coomassie brilliant blue.  We identified 944 proteins expressed in RBSDV infected maize leaves by proteomics approaches.  Among these, 44 protein spots that revealed a 1.5-fold difference in intensity were identified  by mass spectrometry between mock-inoculated and RBSDV infected samples.  Among these, 17 and 26 spots were up-regulated, and 27 and 18 spots were down-regulated in the virus infected samples of Zheng 58 and LN 287, respectively.  Differential protein spots were analyzed by mass spectrometry identification, which could be divided into six categories.  Furthermore, the expression of stress-related proteins was detected and confirmed by qRT-PCR.  This study lays the foundation for further investigations, enabling the enhancement of MRDD resistance in maize.
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Critical role of cytochrome c1 and its cleavage in porcine reproductive and respiratory syndrome virus nonstructural protein 4-induced cell apoptosis via interaction with nsp4
ZHANG Feng, GAO Peng, GE Xin-na, ZHOU Lei, GUO Xin, YANG Han-chun
2017, 16 (11): 2573-2585.   DOI: 10.1016/S2095-3119(17)61670-8
Abstract672)      PDF in ScienceDirect      
    Porcine reproductive and respiratory syndrome virus (PRRSV) actively induces cell apoptosis both in vitro and in vivo, which can contribute critically to viral pathogenesis.  Previous studies have shown that the PRRSV nonstructural protein 4 (nsp4) is an important mediator of this process, but the underlying molecular details remain poorly understood.  In this study, we found that the PRRSV nsp4 interacted with the mitochondrial inner membrane protein cytochrome c1 (cyto.c1) and induced its proteolytic cleavage.  Interestingly, the cleaved N-terminal fragment of cyto.c1 was found to exert apoptotic activity, which could cause mitochondrial fragmentation, resulting in apoptotic cell death.  And RNA interference (RNAi) silencing experiments further confirmed the crucial role which cyto.c1 played in nsp4- and PRRSV-induced cell apoptosis.  Thus, our data provide an important piece of mechanistic clues for PRRSV-induced cell apoptosis and also elucidate a novel mechanism for the 3C-like proteases in this finding. 
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The cellular interactome for glycoprotein 5 of the Chinese highly pathogenic porcine reproductive and respiratory syndrome virus
DU Ji-ge, GE Xin-na, DONG Hong, ZHANG Ning, ZHOU Lei, GUO Xin, YANG Han-chun
2016, 15 (8): 1833-1845.   DOI: 10.1016/S2095-3119(15)61186-8
Abstract1262)      PDF in ScienceDirect      
   The glycoprotein 5 (GP5) of porcine reproductive and respiratory syndrome virus (PRRSV) is a multi-functional protein that plays important roles in virus assembly, entry and viral anti-host responses. In the present study, we investigated the cellular binding partners of GP5 by using lentivirus transduction coupled with immunoprecipitation and mass spectrometry. There were about 40 cellular proteins identified with high Confidence Icons by MS/MS. Ingenuity Pathway Analysis (IPA) indicated that these proteins could be assigned to different functional classes and networks. Furthermore, we validated some of the interactions by co-immunoprecipitation (Co-IP) and confocal microscopy, including those with mitofilin, a mitochondrial inner membrane protein that might be involved in PRRSV or GP5-induced apoptosis, and calnexin, a protein chaperone that might facilitate the folding and maturation of GP5. The interactome data contribute to understand the role and molecular mechanisms of GP5 in PRRSV pathogenesis.
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Construction of a Food-Grade Expression Vector Based on pMG36e by Using an α-Galactosidase Gene as a Selectable Marker
GU Xin-xi, TAN Jian-xin, TIAN Hong-tao, ZHANG Yu-lan, LUO Yun-bo , GUO Xing-hua
2014, 13 (8): 1802-1808.   DOI: 10.1016/S2095-3119(13)60625-5
Abstract1655)      PDF in ScienceDirect      
Construction of a food-grade expression vector for application to lactic acid bacteria (LAB) is of importance for dairy fermentation system. An α-galactosidase (aga) gene encoding an enzyme degrading melibiose was amplified by PCR from the plasmid pRAF800 of Lactococcus lactis NZ9000. The aga gene was introduced into pMG36e to substitute the primary antibiotic selectable marker of pMG36e, resulting in construction of a new food-grade expression vector pMG36-aga. To testify the expression efficiency of exogenous gene in pMG36-aga, a 1.5 kb long α-amylase (amy) gene from Bacillus licheniformis was cloned by PCR and introduced into the plasmid pMG36-aga. The resultant plasimd pMG36-aga-amy was transformed into L. lactis ML23 by electroporation. The positive clones were selected with the medium containing melibiose as the sole carbon source. The selection efficiency of aga was 8.71×103 CFU with a standard deviation of 9.1×102 CFU mg-1 DNA of pMG36-aga. Furthermore, the SDS-PAGE analysis showed that the pMG36-aga-amy expressed a 56.4 kDa protein which was the same as the putative molecular weight of α-amylase. The starch plate assay also indicated that L. lactis ML23 displayed high activity of α-amylase by expressing of amy gene of pMG36-aga-amy.
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Heterogeneity Analysis of Cucumber Canopy in the Solar Greenhouse
QIAN Ting-ting, LU Sheng-lian, ZHAO Chun-jiang, GUO Xin-yu, WEN Wei-liang , DU jian-jun
2014, 13 (12): 2645-2655.   DOI: 10.1016/S2095-3119(14)60776-0
Abstract1546)      PDF in ScienceDirect      
Detailed analysis of canopy structural heterogeneity is an essential step in conducting parameters for a canopy structural model. This paper aims to analyze the structural heterogeneity of a cucumber (Cucumis sativus L.) canopy by means of analyzing leaf distribution in a greenhouse environment with natural sunlight and also to assess the effect of structural canopy heterogeneity on light interception and photosynthesis. Two experiments and four measurements were carried out in autumn 2011 and spring 2012. A static virtual three-dimensional (3D) canopy structure was reconstructed using a 3D digitizing method. The diurnal variation of photosynthesis rate was measured using CIRAS-2 photosynthesis system. The results showed that, leaf azimuth as tested with the Rayleigh-test was homogeneous at vine tip over stage but turned heterogeneous at fruit harvest stage. After eliminating the influence of the environment on the azimuth using the von Mises-Fisher method, the angle between two successive leaves was 144°; at the same time, a rule for the azimuth distribution in the canopy was established, stating that the azimuth distribution in cucumber followed a law which was positive spin and anti-spin. Leaf elevation angle of south-oriented leaves was on average 13.8° higher than that of north-oriented leaves. The horizontal distribution of light interception and photosynthesis differed significantly between differently oriented leaves. East- and west-oriented leaves exhibited the highest photosynthetic rate. In conclusion, detailed analysis of canopy structural heterogeneity in this study indicated that leaf azimuth and elevation angle were heterogeneous in cucumber canopy and they should be explicitly described as they have a great impact both on light distribution and photosynthesis.
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