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SNP-based identification of QTLs for thousand-grain weight and related traits in wheat 8762/Keyi 5214 DH lines
HUANG Feng, LI Xuan-shuang, DU Xiao-yu, LI Shun-cheng, LI Nan-nan, LÜ Yong-jun, ZOU Shao-kui, ZHANG Qian, WANG Li-na, NI Zhong-fu, HAN Yu-lin, XING Jie-wen
2023, 22 (10): 2949-2960.   DOI: 10.1016/j.jia.2023.03.004
Abstract312)      PDF in ScienceDirect      

As important yield-related traits, thousand-grain weight (TGW), grain number per spike (GNS) and grain weight per spike (GWS) are crucial components of wheat production.  To dissect their underlying genetic basis, a double haploid (DH) population comprised of 198 lines derived from 8762/Keyi 5214 was constructed.  We then used genechip to genotype the DH population and integrated the yield-related traits TGW, GNS and GWS for QTL mapping.  Finally, we obtained a total of 18 942 polymorphic SNP markers and identified 41 crucial QTLs for these traits.  Three stable QTLs for TGW were identified on chromosomes 2D (QTgw-2D.3 and QTgw-2D.4) and 6A (QTgw-6A.1), with additive alleles all from the parent 8762, explaining 4.81–18.67% of the phenotypic variations.  Five stable QTLs for GNS on chromosomes 3D, 5B, 5D and 6A were identified.  QGns-5D.1 was from parent 8762, while the other four QTLs were from parent Keyi 5214, explaining 5.89–7.08% of the GNS phenotypic variations.  In addition, a stable GWS genetic locus QGws-4A.3 was detected from the parent 8762, which explained 6.08–6.14% of the phenotypic variations.  To utilize the identified QTLs, we developed STARP markers for four important QTLs, Tgw2D.3-2, Tgw2D.4-1, Tgw6A.1 and Gns3D.1.  Our results provide important basic resources and references for the identification and cloning of genes related to TGW, GNS and GWS in wheat.

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Genetic parameter estimation and genome-wide association study (GWAS) of red blood cell count at three stages in a Duroc×Erhualian pig population
NAN Jiu-hong, YIN Li-lin, TANG Zhen-shuang, CHEN Jian-hai, ZHANG Jie, WANG Hai-yan, DU Xiao-yong, LIU Xiang-dong
2020, 19 (3): 793-799.   DOI: 10.1016/S2095-3119(19)62773-5
Abstract135)      PDF in ScienceDirect      
Red blood cells play an essential role in the immune system.  Moreover, red blood cell count (RBC) is an important clinical indicator of various diseases, including anemia, type 2 diabetes and the metabolic syndrome.  Thus, it is necessary to reveal the genetic mechanism of RBC for animal disease resistance breeding.  However, quite a few studies had focused on porcine RBC, especially at different stages.  Thus, studies on porcine RBC at different stages are needed for disease resistant breeding.  In this study, the porcine RBC of 20-, 33-, and 80-day old were measured, and genetic parameter estimation and genome-wide association study (GWAS) were both performed.  As a result, the heritability was about 0.6 at the early stages, much higher than that at 80 days.  Nine novel genome wide significant single nucleotide polymorphisms (SNPs), located at Sus scrofa chromosome (SSC)3, 4, 8, 9, 10 and 15, respectively, were identified.  Further, TGFβ2, TMCC2 and PPP1R15B genes were identified as important candidate genes of porcine red blood cell count.  So different SNPs and candidate genes were found significantly associated with porcine RBC at different stages, suggesting that different genes might play key roles on porcine RBC at different stages.  Overall, new evidences were offered in this study for the genetic bases of animal RBC, and that the SNPs and candidate genes would be useful for disease resistant breeding of pig.
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Ultrastructure of the sensilla on antennae and mouthparts of larval and adult Plutella xylostella (Lepidoptera: Plutellidae)
LI Yi-ping, DU Xiao, LIU Fang-fang, LI Yin, LIU Tong-xian
2018, 17 (06): 1409-1420.   DOI: 10.1016/S2095-3119(17)61844-6
Abstract519)      PDF in ScienceDirect      
Plutella xylostella (L.) (Plutellidae) is an important agricultural pest throughout the world.  In this study, the morphology of antennal and mouthpart sensilla in the larvae and adults of P. xylostella (L.) was observed by using a scanning electron microscope.  The larval antennae possess six sensilla basiconica, two sensilla chaetica and one sensillum styloconicum.  Larval mouthparts possess six types of sensilla: sensilla chaetica, sensilla digitiformia, sensilla epipharyngeal, sensilla basiconica, sensilla styloconica and sensilla placodea.  In the adult, seven types of sensilla are found on the antennae in males and six types of sensilla (sensilla basiconica absent) occur in females.  Sexual dimorphism is also found in the number and size of these sensilla on the antennae of adults.  We describe for the first time the five types of sensilla on the mouthparts of the adult of P. xylostella.  This study provides useful information for further research into the function of these sensilla, and better understanding the behavioral mechanisms involved in pest control.
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Molecular mapping of a stripe rust resistance gene in Chinese wheat cultivar Mianmai 41
REN Yong, LI Sheng-rong, WEI Yu-ming, ZHOU Qiang, DU Xiao-ying, HE Yuan-jiang, ZHENG You-liang
2015, 14 (2): 295-304.   DOI: 10.1016/S2095-3119(14)60781-4
Abstract1808)      PDF in ScienceDirect      
Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most damaging diseases of wheat. Chinese wheat cultivar Mianmai 41 showed high resistance against most of the prevailing Pst races in China. Genetic analysis of the F1, F2 and F2:3 populations from a cross between Mianmai 41 and a susceptible line Mingxian 169 indicated that resistance to Pst race CYR32 was conferred by a single dominant gene, temporarily designated as YrMY41. Molecular marker analysis placed the gene on chromosome 1B near the centromere. Six co-dominant genomic SSR markers Xwmc329, Xwmc406, Xgwm18, Xgwm131, Xgwm413, and Xbarc312, and one STS marker Xwe173 linked with the resistance gene. The two closest flanking SSR markers were Xgwm18 and Xwmc406, with genetic distances of 2.0 and 4.9 cM, respectively. A seedling test with 29 Pst isolates indicated the reaction patterns of Mianmai 41 were different from those of lines carrying Yr3, Yr9, Yr10, Yr15, Yr26, and YrCH42 on chromosome 1B. Allelic tests indicated that YrMY41 is likely a new allele at Yr26 locus.
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MiR-21-5p ameliorates Busulfan-induced testicular dysfunction and maintains spermatogenesis
ZHANG Meng-fei, WAN Shi-cheng, CHEN Wen-bo, YANG Dong-hui, WANG Cong-liang, LI Ba-lun, Aili Aierken, DU Xiao-min, LI Yun-xiang, WU Wen-ping, WANG Yu-qi, XIE Fang-de, LUO Xuan, LI Na, LI Xue-ling, YANG Lei, Ahmed Hamed Arisha, HUA Jin-lian
DOI: 10.1016/j.jia.2024.02.004 Online: 07 March 2024
Abstract103)      PDF in ScienceDirect      
Spermatogonial stem cells (SSCs) are the key to maintaining production of the sperms and healthy offsprings, and also treating breeding livestock’s reproductive damage and infertility. MicroRNAs act a decisive role in regulating gene expression in many cells and tissues, including in processes such as proliferation, self-renewal, differentiation, and apoptosis of stem cells. However, the miRNA mechanism in regulation of SSCs is still unclear. Here, high-throughput sequencing was used to identify specific miRNAs. We confirmed that miR-21-5p was concentrated in both goat and mouse SSCs, and enhanced the proliferation and antiapoptotic ability of SSCs. In vivo experiments have shown that miR-21-5p resisted the damage of the chemotherapy drug Busulfan to germ cells, ameliorated Busulfan-induced testicular dysfunction, and maintained spermatogenesis. Further RNA-seq and target gene prediction revealed that SPRY1 and FASLG are targets of miR-21-5p, thereby activating downstream signaling pathways such as MAPK/ERK, PI3K-AKT, and apoptosis. In summary, miR-21-5p is crucial for the self-renewal and maintenance of SSCs. This study provides new avenues for treating breeding livestock’s reproductive damages, infertility, oligospermia, and other conditions.
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