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Significant reduction of ammonia emissions while increasing crop yields using the 4R nutrient stewardship in an intensive cropping system
ZHANG Chong, WANG Dan-dan, ZHAO Yong-jian, XIAO Yu-lin, CHEN Huan-xuan, LIU He-pu, FENG Li-yuan, YU Chang-hao, JU Xiao-tang
2023, 22 (6): 1883-1895.   DOI: 10.1016/j.jia.2022.12.008
Abstract157)      PDF in ScienceDirect      

Ammonia (NH3) emissions should be mitigated to improve environmental quality.  Croplands are one of the largest NH3 sources, they must be managed properly to reduce their emissions while achieving the target yields.  Herein, we report the NH3 emissions, crop yield and changes in soil fertility in a long-term trial with various fertilization regimes, to explore whether NH3 emissions can be significantly reduced using the 4R nutrient stewardship (4Rs), and its interaction with the organic amendments (i.e., manure and straw) in a wheat–maize rotation.  Implementing the 4Rs significantly reduced NH3 emissions to 6 kg N ha–1 yr–1 and the emission factor to 1.72%, without compromising grain yield (12.37 Mg ha–1 yr–1) and soil fertility (soil organic carbon of 7.58 g kg–1) compared to the conventional chemical N management.  When using the 4R plus manure, NH3 emissions (7 kg N ha–1 yr–1) and the emission factor (1.74%) were as low as 4Rs, and grain yield and soil organic carbon increased to 14.79 Mg ha–1 yr–1 and 10.09 g kg–1, respectively.  Partial manure substitution not only significantly reduced NH3 emissions but also increased crop yields and improved soil fertility, compared to conventional chemical N management.  Straw return exerted a minor effect on NH3 emissions.  These results highlight that 4R plus manure, which couples nitrogen and carbon management can help achieve both high yields and low environmental costs.

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Virome identification in wheat in the Czech Republic using small RNA deep sequencing
Khushwant SINGH, Jana JAROŠOVÁ, Jan FOUSEK, CHEN Huan, Jiban Kumar KUNDU
2020, 19 (7): 1825-1833.   DOI: 10.1016/S2095-3119(19)62805-4
Abstract140)      PDF in ScienceDirect      
High-throughput deep-sequencing technology and bioinformatics analysis of the small RNA (sRNA) population isolated from plants allows universal virus detection and complete virome reconstruction for a given sample.  In the present sRNA deep-sequencing analysis of virus-infected wheat samples in the Czech Republic, samples were firstly tested for barley yellow dwarf viruses (BYDVs), wheat streak mosaic virus (WSMV) and wheat dwarf virus (WDV) using ELISA, RT-PCR and PCR.  Subsequent sRNA sequencing of these samples yielded more than ~60 million single-end 50-bp reads with high confidence for nine field samples of wheat.  Overall, 16.5% of reads were virus-specific and 83.5% were mapped to the host.  More 21-nt reads (~7.7E+06 reads) were found than 24-nt (~6.20E+06 reads) or 22-nt (~4.30E+06 reads) reads.  De novo assembly of the high-quality contigs revealed the presence of three earlier reported viruses in the Czech Republic: BYDVs (31.48%), WSMV (24.23%) and WDV (26.66%).  We also showed the presence of cereal yellow dwarf virus (14.33%; two species CYDV-RPS and CYDV-RPV (family Luteoviridae/Polerovirus) and wheat yellow dwarf virus (WYDV, 3.30%; Luteoviridae).  Phylogenetic analysis showed CYDV and WYDV grouped separately from BYDVs.  Furthermore, several recombination breakpoints were found among the groups of yellow dwarf viruses (BYDVs, CYDV, and WYDV).  Using RNA deep sequencing, we confirmed the presence of the three known viruses (BYDVs, WSMV, and WDV) and the first record of two species of CYDV and WYDV in wheat in the Czech Republic.
 
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Gene mapping and candidate gene analysis of aberrant-floral spikelet 1 (afs1) in rice (Oryza sativa L.)
ZHANG Ting, YOU Jing, YU Guo-ling, ZHANG Yi, CHEN Huan, LI Yi-dan, YE Li, YAO Wan-yue, TU Yu-jie, LING Ying-hua, HE Guang-hua, LI Yun-feng
2020, 19 (4): 921-930.   DOI: 10.1016/S2095-3119(19)62847-9
Abstract136)      PDF in ScienceDirect      
The spikelet is a unique inflorescence structure in grasses.  However, the molecular mechanism that regulates its development remains unclear, and we therefore characterize a spikelet mutant of rice (Oryza sativa L.), aberrant-floral spikelet 1 (afs1), which was derived from treatment of Xinong 1B with ethyl methanesulfonate.  In the afs1 mutant, the spikelet developed an additional lemma-like organ alongside the other normally developed floral organs, and the paleae were degenerated to differing degrees with or without normally developed inner floral organs.  Genetic analysis revealed that the afs1 phenotype was controlled by a single recessive gene.  The AFS1 gene was mapped between the insertion/deletion (InDel) marker Indel19 and the simple sequence repeat marker RM16893, with a physical distance of 128.5 kb on chromosome 4.  Using sequence analysis, we identified the deletion of a 5-bp fragment and a transversion from G to A within LOC_Os04g32510/ LAX2, which caused early termination of translation in the afs1 mutant.  These findings suggest that AFS1 may be a new allele of LAX2, and is involved in the development of floral organs by regulating the expression of genes related to their development.  The above results provide a new view on the function of LAX2, which may also regulate the development of spikelets.
 
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Interaction effect of nitrogen form and planting density on plant growth and nutrient uptake in maize seedlings
WANG Peng, WANG Zhang-kui, SUN Xi-chao, MU Xiao-huan, CHEN Huan, CHEN Fan-jun, Yuan Lixing, MI Guo-hua
2019, 18 (5): 1120-1129.   DOI: 10.1016/S2095-3119(18)61977-X
Abstract874)      PDF in ScienceDirect      
High planting density is essential to increasing maize grain yield.  However, single plants suffer from insufficient light under high planting density.  Ammonium (NH4+) assimilation consumes less energy converted from radiation than nitrate (NO3).  It is hypothesized that a mixed NO3/NH4+supply is more important to improving plant growth and population productivity under high vs. low planting density.  Maize plants were grown under hydroponic conditions at two planting densities (low density: 208 plants m–2 and high density: 667 plants m–2) and three nitrogen forms (nitrate only, 75/25NO3/NH4+ and ammonium only).  A significant interaction effect was found between planting density and N form on plant biomass.  Compared to nitrate only, 75/25NO3/NH4+ increased per-plant biomass by 44% under low density, but by 81% under high density.  Treatment with 75/25NO3/NH4+ increased plant ATP, photosynthetic rate, and carbon amount per plant by 31, 7, and 44% under low density, respectively, but by 51, 23, and 95% under high density.  Accordingly, carbon level per plant under 75/25NO3/NH4+ was improved, which increased leaf area, specific leaf weight and total root length, especially for high planting density, increased by 57, 17 and 63%, respectively.  Furthermore, under low density, 75/25NO3/NH4+ increased nitrogen uptake rate, while under high density, 75/25NO3/NH4+ increased nitrogen, phosphorus, copper and iron uptake rates.  By increasing energy use efficiency, an optimum NO3/NH4+ ratio can improve plant growth and nutrient uptake efficiency, especially under high planting density.  In summary, an appropriate supply of NH4+ in addition to nitrate can greatly improve plant growth and promote population productivity of maize under high planting density, and therefore a mixed N form is recommended for high-yielding maize management in the field.
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Gene mapping and candidate gene analysis of multi-floret spikelet 3 (mfs3) in rice (Oryza sativa L.)
ZHENG Hao, ZHANG Jun, ZHUANG Hui, ZENG Xiao-qin, TANG Jun, WANG Hong-lei, CHEN Huan, LI Yan, LING Ying-hua, HE Guang-hua, LI Yun-feng
2019, 18 (12): 2673-2681.   DOI: 10.1016/S2095-3119(19)62652-3
Abstract164)      PDF in ScienceDirect      
Rice (Oryza sativa L.) is one of the most important food crops worldwide and a model monocot plant for gene function analysis, so it is an ideal system for studying flower development.  This study reports a mutant, named multi-floret spikelet 3 (mfs3), which is related to the spikelet development in rice and derived from the ethylmethane sulfonate (EMS)-treated rice cultivar XIDA 1B.  In mfs3, the main body of palea (bop) was degenerated severely and only glume-like marginal regions of palea (mrp) remained, while other floral organs developed normally, indicating that the palea identity was seriously influenced by the mutation.  It was also observed that the number of floral organs was increased in some spikelets, including 2 lemmas, 4 mrp, 4 lodicules, 8–10 stamens, and 2 pistils, which meant that the spikelet determinacy was lost to some degree in mfs3.  Furthermore, genetic analysis demonstrated that the mfs3 trait was controlled by a single recessive gene.  Using 426 F2 mutants derived from the cross between sterile line 56S and mfs3, the MULTI-FLORET SPIKELET 3 (MFS3) gene was mapped between the molecular markers RM19347 and RM19352 on Chr.6, with a physical distance of 106.3 kb.  Sequencing of candidate genes revealed that an 83-bp fragment loss and a base substitution occurred in the LOC_Os06g04540 gene in the mutant, confirming preliminarily that the LOC_Os06g04540 gene was the MFS3 candidate gene.  Subsequent qPCR analysis showed that the mutation caused the down-regulation of OsMADS1 and FON1 genes, and the up-regulation of OsIDS1 and SNB genes, which are all involved in the regulation of spikelet development.  The MFS3 mutation also significantly reduced the transcription of the REP gene, which is involved in palea development.  These results indicated that the MFS3 gene might be involved in the spikelet meristem determinacy and palea identity by regulating the expression of these related genes.
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Overexpression of vacuolar proton pump ATPase (V-H+-ATPase) subunits B, C and H confers tolerance to salt and saline-alkali stresses in transgenic alfalfa (Medicago sativa L.)
WANG Fa-wei, WANG Chao, SUN Yao, WANG Nan, LI Xiao-wei, DONG Yuan-yuan, Yao Na, Liu Xiu-ming, CHEN Huan, CHEN Xi-feng, WANG Zhen-min, LI Hai-yan
2016, 15 (10): 2279-2289.   DOI: 10.1016/S2095-3119(16)61399-0
Abstract1601)      PDF in ScienceDirect      
    The vacuolar proton pump ATPase (V-H+-ATPase), which is a multi-subunit membrane protein complex, plays a major role in the activation of ion and nutrient transport and has been suggested to be involved in several physiological processes, such as cell expansion and salt tolerance. In this study, three genes encoding V-H+-ATPase subunits B (ScVHA-B, GenBank: JF826506), C (ScVHA-C, GenBank: JF826507) and H (ScVHA-H, GenBank: JF826508) were isolated from the halophyte Suaeda corniculata. The transcript levels of ScVHA-B, ScVHA-C and ScVHA-H were increased by salt, drought and saline-alkali treatments. V-H+-ATPase activity was also examined under salt, drought and saline-alkali stresses. The results showed that V-H+-ATPase activity was correlated with salt, drought and saline-alkali stress. Furthermore, V-H+-ATPase subunits B, C and H (ScVHA-B, ScVHA-C and ScVHA-H) from S. corniculata were introduced separately into the alfalfa genome. The transgenic alfalfa was verified by Southern and Northern blot analysis. During salt and saline-alkali stresses, transgenic linevacuolar proton pump, salt tolerance, saline-alkali tolerance, alfalfa
s carrying the B, C and H subunits had higher germination rates than the wild type (WT). More free proline, higher superoxide dismutase (SOD) activity and lower malondialdehyde (MDA) levels were detected in the transgenic plants under salt and saline-alkali treatments. Moreover, the ScVHA-B transgenic lines showed greater tolerance to salt and saline-alkali stresses than the WT. These results suggest that overexpression of ScVHA-B, ScVHA-C and ScVHA-H improves tolerance to salt and saline-alkali stresses in transgenic alfalfa.
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cDNA cloning and characterization of the carboxylesterase pxCCE016b from the diamondback moth, Plutella xylostella L.
HU Zhen-di, FENG Xia, LIN Qing-sheng, CHEN Huan-yu, LI Zhen-yu, YIN Fei, LIANG Pei, GAO Xi-wu
2016, 15 (05): 1059-1068.   DOI: 10.1016/S2095-3119(15)61278-3
Abstract1668)      PDF in ScienceDirect      
    Carboxylesterase is a multifunctional superfamily and can be found in almost all living organisms. As the metabolic enzymes, carboxylesterases are involved in insecticides resistance in insects for long time. In our previous studies, the enhanced carboxylesterase activities were found in the chlorantraniliprole resistance strain of diamondback moth (DBM). However, the related enzyme gene of chlorantraniliprole resistance has not been clear in this strain. Here, a full-length cDNA of carboxylesterase pxCCE016b was cloned and exogenously expressed in Escherichia coli at the first time, which contained a 1 693 bp open reading frame (ORF) and encoded a protein of 542 amino acids. Sequence analysis showed that this cDNA has a predicted mass of 61.56 kDa and a theoretical isoelectric point value of 5.78. The sequence of deduced amino acid possessed the classical structural features: a type-B carboxylesterase signature 2 (EDCLYLNVYTK), a type-B carboxylesterase serine active site (FGGDPENITIFGESAG) and the catalytic triad (Ser186, Glu316, and His444). The real-time quantitative PCR (qPCR) analysis showed that the expression level of the pxCCE016b was significantly higher in the chlorantraniliprole resistant strain than in the susceptible strain. Furthermore, pxCCE016b was highly expressed in the midgut and epidermis of the DBM larvae. When the 3rd-instar larvae of resistant DBM were exposed to abamectin, alpha-cypermethrin, chlorantraniliprole, spinosad, chlorfenapyr and indoxacarb insecticides, the up-regulated expression of pxCCE016b was observed only in the group treated by chlorantraniliprole. In addition, recombinant vector pET-pxCCE016b was constructed with the most coding region (1 293 bp) and large number of soluble recombinant proteins (less than 48 kDa) were expressed successfully with prokaryotic cell. Western blot analysis showed that it was coded by pxCCE016b. All the above findings provide important information for further functional study, although we are uncertainty whether the pxCCE016b gene is actually involved in chlorantraniliprole resistance.
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Biochemical Mechanism of Chlorantraniliprole Resistance in the Diamondback Moth, Plutella xylostella Linnaeus
HU Zhen-di, FENG Xia, LIN Qing-sheng, CHEN Huan-yu, LI Zhen-yu, YIN Fei, LIANG Pei , GAO Xi-wu
2014, 13 (11): 2452-2459.   DOI: 10.1016/S2095-3119(14)60748-6
Abstract1337)      PDF in ScienceDirect      
The insecticide chlorantraniliprole exhibits good efficacy and plays an important role in controlling the diamondback moth, Plutella xylostella Linnaeus. However, resistance to chlorantraniliprole has been observed recently in some field populations. At present study, diamondback moths with resistance to chlorantraniliprole (resistant ratio (RR) was 82.18) for biochemical assays were selected. The assays were performed to determine potential resistance mechanisms. The results showed that the selected resistant moths (GDLZ-R) and susceptible moth could be synergized by known metabolic inhibitors such as piperonyl butoxide (PBO), triphenyl phosphate (TPP) and diethyl-maleate (DEM) at different levels (1.68-5.50-fold and 2.20-2.89-fold, respectively), and DEM showed the maximum synergism in both strains. In enzymes assays, a high level of glutathione-S-transferase (GST) was observed in the resistant moth, in contrast, moths that are susceptible to the insecticide had only 1/3 the GST activity of the resistant moths. The analysis of short-term exposure of chlorantraniliprole on biochemical response in the resistant strain also showed that GST activity was significantly elevated after exposure to a sub-lethal concentration of chlorantraniliprole (about 1/3 LC50, 12 mg L-1) 12 and 24 h, respectively. The results show that there is a strong correlation between the enzyme activity and resistance, and GST is likely the main detoxification mechanism responsible for resistance to chlorantraniliprole in P. xylostella L., cytochrome P450 monooxygenase (P450) and carboxy-lesterase (CarE) are involved in to some extent.
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