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Influence of long-term livestock manure substitution on water erosion and labile organic carbon lateral loss on subtropical sloping croplands
Keke Hua, Bo Zhu, Zhibin Guo, Daozhong Wang, Linchuan Zhan, Lin Jin, Hirohiko Nagano, Kazuyuki Inubushi
2026, 25 (2): 481-492.   DOI: 10.1016/j.jia.2025.07.023
Abstract118)      PDF in ScienceDirect      


The lateral transport of labile organic carbon represents a critical pathway for soil organic carbon (SOC) loss, reducing organic carbon sequestration and increasing the risk of waterbody pollution.  Livestock manure application on croplands serves as a common fertilizer reduction practice to sustain crop yields, enhance SOC sequestration, and reduce water erosion.  However, limited quantitative assessments have examined the effects of livestock manure substitution on labile organic carbon lateral loss and fluxes in long-term experiments.  This study conducted a three-year field investigation on subtropical sloping croplands to assess the impact of livestock manure substitution on dissolved organic carbon (DOC) and particulate organic carbon (POC) loss via surface runoff, interflow and eroded sediments.  There are four treatments: no fertilization (CK); chemical nitrogen fertilizer (SF), 40% nitrogen substitution with pig manure (PMF), and 100% nitrogen substitution from pig manure (PM).  Compared to SF treatment, long-term livestock manure substitution in PMF and PM treatments significantly (P<0.05) reduced annual cumulative surface runoff fluxes by 13.5 and 21.6%, respectively.  Manure applications decreased annual sediment fluxes by 12.9 and 19.1%, respectively.  Soil water stable aggregates for mean weight diameter (MWD) increased significantly by 37.7 and 73.6%.  Annual cumulative POC loss flux via eroded sediment under PMF and PM treatments increased significantly (P<0.05) by 61.1 and 47.9%, respectively.  The labile organic carbon loss fluxes, including DOC and POC losses, under PMF and PM treatments increased significantly (P<0.05) by 11.9 and 31.4%, respectively.  These results demonstrate that while water erosion intensity decreases due to enhanced soil aggregate stability, the risk of labile organic carbon loss increases after long-term livestock manure substitution in subtropical sloping croplands.  Future research should examine labile organic carbon lateral migration under various soil types and slope gradients for livestock manure application in subtropical agricultural ecosystem croplands to better understand extreme rainfall effects.


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Integrated analyses of genomic and transcriptomic data reveal candidate variants associated with carcass traits in Huaxi cattle
Yapeng Zhang, Wentao Cai, Qi Zhang, Qian Li, Yahui Wang, Ruiqi Peng, Haiqi Yin, Xin Hu, Zezhao Wang, Bo Zhu, Xue Gao, Yan Chen, Huijiang Gao, Lingyang Xu, Junya Li, Lupei Zha
2025, 24 (8): 3169-3184.   DOI: 10.1016/j.jia.2024.01.028
Abstract272)      PDF in ScienceDirect      

Cattle carcass traits are economically important in the beef industry.  In the present study, we identified 184 significant genes and 822 alternative genes for 7 carcass traits using genome-wide association studies (GWAS) in 1,566 Huaxi beef cattle.  We then identified 5,860 unique cis-genes and 734 trans-genes in 227 longissimus dorsi muscle (LDM) samples to better understand the genetic regulation of gene expression.  Our integration study of the GWAS and cis-eQTL analysis detected 13 variants regulating 12 identical genes, in which one variant was also detected in fine-mapping analysis.  Moreover, using a transcriptome-wide association study (TWAS), we identified 4 genes (TTC30B, HMGA1, PRKD3 and FXN) that were significantly related to carcass chest depth (CCD), carcass length (CL), carcass weight (CW) and dressing percentage (DP).  This study identified variants and genes that may be useful for understanding the molecular mechanism of carcass traits in beef cattle.

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Crop straw incorporation increases the soil carbon stock by improving the soil aggregate structure without stimulating soil heterotrophic respiration
Hongyu Lin, Jing Zheng, Minghua Zhou, Peng Xu, Ting Lan, Fuhong Kuang, Ziyang Li, Zhisheng Yao, Bo Zhu
2025, 24 (4): 1542-1561.   DOI: 10.1016/j.jia.2024.09.026
Abstract261)      PDF in ScienceDirect      
Crop straw incorporation is widely recommended to maintain crop yields and improve soil organic carbon (SOC) stocks as well as soil quality.  However, the long-term effects of different straw incorporation practices on the SOC stock remain uncertain.  In this study, a long-term experiment (2007 to 2018) with four treatments (MW0: maize–wheat rotation with no straw incorporation, MW50: maize–wheat rotation with 50% chopped straw incorporation, MWb50: maize–wheat rotation with 50% in situ burned harvested straw, and MF50: maize–fallow rotation with 50% harvested maize straw incorporation) was set up to evaluate the response of the SOC stock to different straw incorporation methods.  The results showed that the SOC stock significantly increased by 32.4, 12.2 and 17.4% under the MW50, MWb50 and MF50 treatments, respectively, after continuous straw incorporation over a decade, while the SOC stock under MW0 was significantly reduced by 22.9% after the 11 year long-term experiment.  Compared to MW0, straw incorporation significantly increased organic carbon input, and improved the soil aggregate structure and the ratio of dissolved organic carbon (DOC) to particulate organic carbon (POC), but it did not significantly stimulate soil heterotrophic respiration, resulting in the increased SOC accumulation rate and SOC stocks of bulk soil.  The increased ratio of DOC to microbial biomass carbon (MBC) enhanced the relative abundances of Acidobacteria and Proteobacteria but inhibited Bacteroidetes and Chloroflexi, and the bacterial relative abundances were the main reasons for the non-significant increase or even decrease in soil heterotrophic respiration with straw incorporation.  The SOC stock would reach an equilibrium based on the results of Rothamsted carbon (RothC) model simulations, with a long-term equilibrium value of 18.85 Mg ha–1 under MW50.  Overall, the results of the long-term field experiment (2007–2018) and RothC model simulation suggested that maize–wheat rotation with 50% chopped straw incorporation delivered the largest benefits for the SOC stock in calcareous soils of subtropical mountain landscapes over the long term.


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Biochar's superior surface properties over straw contribute to soil N losses reduction and crop yield improvement
Debo He, Dongni Hu, Jinbo Zhang, Zhixin Dong, Bo Zhu
DOI: 10.1016/j.jia.2025.07.008 Online: 08 July 2025
Abstract36)      PDF in ScienceDirect      

Excessive nitrogen (N) losses from cropland are serious threats to sustainable agricultural and ecological development.  Recently, straw and biochar (BC) have been widely applied in cropland to reduce soil N losses, but the mechanisms by which their physicochemical properties affect soil N cycling and soil N losses remain unclear.  This study investigated the responses of soil N transformation and crop yield on BC and straw applications through incubation and field experiments.  Density function theory (DFT) calculations were performed to determine the different impacts of straw and BC on soil N losses at the molecular scale.  Our results indicated that BC application at a weight percent of 3 (3.0wt %) exhibited superior performance in promoting soil N transformation.  The superior physicochemical properties of BC over straw contributed to enhanced interaction and adsorption energies with NO3--N and NH4+-N, which reduced soil N losses by 20.2% from interflow of field experiment compared to straw.  BC application reduced soil N2O by 45.0% compared to the field with conventional fertilization by modulating the functional genes of microorganisms and weakening the soil denitrification.  Although BC increased soil NH3 volatilization by improving urease functional genes (ureC, UreB) compared to straw, it also significantly improved N use efficiency in 25.3% of the crops compared to straw.  Thus, in calcareous purple soils, 3.0 wt% BC content provided superior performance in terms of enhanced N cycling, reduced N losses and improved crop yields compared to straw.  In conclusion, these findings provide insights into optimizing cropland BC application and enhancing soil fertility for sustainable agricultural and ecological developments.

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