Aktories K, Orth J, Adler B, Aktories K, Orth J, Adler B. 2012. Pasteurella multocida: Molecular biology, toxins and infection. Current Topics in Microbiology & Immunology, 361, 73–92.

Beker M, Rose S, Lykkebo C A, Douthwaite S. 2018. Integrative and conjugative elements (ICEs) in pasteurellaceae species and their detection by multiplex PCR. Frontiers in Microbiology, 9, 1329.

Bertelli C, Laird M R, Williams K P, Lau B Y, Hoad G, Winsor G L, Brinkman F S. 2017. IslandViewer 4: Expanded prediction of genomic islands for larger-scale datasets. Nucleic Acids Research, 45, W30–W35.

Bortolaia V, Kaas R S, Ruppe E, Roberts M C, Schwarz S, Cattoir V, Philippon A, Allesoe R L, Rebelo A R, Florensa A F, Fagelhauer L, Chakraborty T, Neumann B, Werner G, Bender J K, Stingl K, Nguyen M, Coppens J, Xavier B B, Malhotra-Kumar S, et al. 2020. ResFinder 4.0 for predictions of phenotypes from genotypes. Journal of Antimicrobial Chemotherapy, 75, 3491–3500.

Bossé J T, Li Y, Fernandez Crespo R, Chaudhuri R R, Rogers J, Holden M T, Maskell D J, Tucker A W, Wren B W, Rycroft A N, Langford P R. 2016. ICEApl1, an integrative conjugative element related to ICEHin1056, identified in the pig pathogen Actinobacillus pleuropneumoniae. Frontiers in Microbiology, 7, 810.

Botelho J, Grosso F, Peixe L. 2019. Antibiotic resistance in Pseudomonas aeruginosa-mechanisms, epidemiology and evolution. Drug Resistance Updates, 44, 100640.

Botelho J, Schulenburg H. 2021. The role of integrative and conjugative elements in antibiotic resistance evolution. Trends in Microbiology, 29, 8–18.

Burrus V, Pavlovic G, Decaris B, Guédon G. 2002. Conjugative transposons: The tip of the iceberg. Molecular Microbiology, 46, 601–610.

Carver T J, Rutherford K M, Berriman M, Rajandream M A, Barrell B G, Parkhill J. 2005. ACT: The artemis comparison tool. Bioinformatics, 21, 3422–3423.

CLSI. 2021. Performance standards for antimicrobial susceptibility testing, 31st ed. CLSI supplement M100. Clinical and Laboratory Standards Institute, Wayne, PA.

Heilers J H, Reiners J, Heller E M, Golzer A, Smits S H J, van der Does C. 2019. DNA processing by the MOBH family relaxase TraI encoded within the gonococcal genetic island. Nucleic Acids Research, 47, 8136–8153.

Johnson C M, Grossman A D. 2015. Integrative and conjugative elements (ICEs): What they do and how they work. Annual Review of Genetics, 49, 577–601.

Juhas M, Crook D W, Dimopoulou I D, Lunter G, Harding R M, Ferguson D J, Hood D W. 2007a. Novel type IV secretion system involved in propagation of genomic islands. Journal of Bacteriology, 189, 761–771.

Juhas M, Dimopoulou I, Robinson E, Elamin A, Harding R, Hood D, Crook D. 2013. Identification of another module involved in the horizontal transfer of the Haemophilus genomic island ICEHin1056. Plasmid, 70, 277–283.

Juhas M, Power P M, Harding R M, Ferguson D J, Dimopoulou I D, Elamin A R, Mohd-Zain Z, Hood D W, Adegbola R, Erwin A, Smith A, Munson R S, Harrison A, Mansfield L, Bentley S, Crook D W. 2007b. Sequence and functional analyses of Haemophilus spp. genomic islands. Genome Biology, 8, R237.

Kadlec K, Li J, Michael G B, Kaspar H, Shen Y, Wang Y, Schwarz S, 2017. Identification of a novel multiresistance integrative and conjugative element ICEPmu2 in a bovine Pasteurella multocida isolate from Germany. In: 7th Symposium on Antimicrobial Resistance in Animals and the Environment, ARAE-Proceedings, Braunschweig, Germany.

Kelley D R, Schatz M C, Salzberg S L. 2010. Quake: Quality-aware detection and correction of sequencing errors. Genome Biology, 11, R116.

Klima C L, Zaheer R, Cook S R, Booker C W, Hendrick S, Alexander T W, Mcallister T A. 2014. Pathogens of bovine respiratory disease in North American feedlots conferring multidrug resistance via integrative conjugative elements. Journal of Clinical Microbiology, 52, 438–448.

Korostin D, Kulemin N, Naumov V, Belova V, Kwon D, Gorbachev A. 2020. Comparative analysis of novel MGISEQ-2000 sequencing platform vs Illumina HiSeq 2500 for whole-genome sequencing. PLoS ONE, 15, e0230301.

Li X, Xie Y, Liu M, Tai C, Sun J, Deng Z, Ou H Y. 2018. oriTfinder: A web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements. Nucleic Acids Research, 46, W229–W234.

Liu M, Li X, Xie Y, Bi D, Sun J, Li J, Tai C, Deng Z, Ou H Y. 2019. ICEberg 2.0: An updated database of bacterial integrative and conjugative elements. Nucleic Acids Research, 47, D660–D665.

Luo X, Mu K, Zhao Y, Zhang J, Qu Y, Hu D, Jia Y, Dai P, Weng J, Wang D, Yu L. 2022. Emergence of bla (NDM-1)-carrying aeromonas caviae K433 isolated from patient with community-acquired pneumonia. Frontiers in Microbiology, 13, 825389.

Michael G B, Kadlec K, Sweeney M T, Brzuszkiewicz E, Liesegang H, Daniel R, Murray R W, Watts J L, Schwarz S. 2012. ICEPmu1, an integrative conjugative element (ICE) of Pasteurella multocida: structure and transfer. Journal of Antimicrobial Chemotherapy, 67, 91–100.

Moustafa A M, Seemann T, Gladman S, Adler B, Harper M, Boyce J D, Bennett M D J P O. 2015. Comparative genomic analysis of Asian Haemorrhagic septicaemia-associated strains of Pasteurella multocida identifies more than 90 Haemorrhagic septicaemia-specific genes. PLoS ONE, 10, e0130296.

Nurk S, Bankevich A, Antipov D, Gurevich A A, Korobeynikov A, Lapidus A, Prjibelski A D, Pyshkin A, Sirotkin A, Sirotkin Y, Stepanauskas R, Clingenpeel S R, Woyke T, McLean J S, Lasken R, Tesler G, Alekseyev M A, Pevzner P A. 2013. Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. Journal of Computational Biology, 20, 714–737.

Partridge S R, Kwong S M, Firth N, Jensen S O. 2018. Mobile genetic elements associated with antimicrobial resistance. Clinical Microbiology Reviews, 31, e00088-17.

Peng Z, Liang W, Wang Y, Liu W, Zhang H, Yu T, Zhang A, Chen H, Wu B. 2017. Experimental pathogenicity and complete genome characterization of a pig origin Pasteurella multocida serogroup F isolate HN07. Veterinary Microbiology, 198, 23–33.

Schink A K, Hanke D, Semmler T, Brombach J, Bethe A, Lübke-Becker A, Teske K, Müller K E, Schwarz S. 2022. Novel multiresistance-mediating integrative and conjugative elements carrying unusual antimicrobial resistance genes in Mannheimia haemolytica and Pasteurella multocida. Journal of Antimicrobial Chemotherapy, 77, 2033–2035.

Sheppard A E, Stoesser N, Wilson D J, Sebra R, Kasarskis A, Anson L W, Giess A, Pankhurst L J, Vaughan A, Grim C J, Cox H L, Yeh A J, Sifri C D, Walker A S, Peto T E, Crook D W, Mathers A J. 2016. Nested russian doll-like genetic mobility drives rapid dissemination of the carbapenem resistance gene blaKPC. Antimicrobial Agents and Chemotherapy, 60, 3767–3778.

Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. 2006. ISfinder: The reference centre for bacterial insertion sequences. Nucleic Acids Research, 34, D32–D36.

Smith E, Miller E, Aguayo J M, Figueroa C F, Nezworski J, Studniski M, Wileman B, Johnson T. 2021. Genomic diversity and molecular epidemiology of Pasteurella multocida. PLoS ONE, 16, e0249138.

Sullivan M J, Petty N K, Beatson S A. 2011. Easyfig: A genome comparison visualizer. Bioinformatics, 27, 1009–1010.

Tamura K, Stecher G, Kumar S. 2021. MEGA11: Molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution, 38, 3022–3027.

Wozniak R A, Waldor M K. 2010. Integrative and conjugative elements: Mosaic mobile genetic elements enabling dynamic lateral gene flow. Nature Reviews Microbiology, 8, 552–563.

Zhu D, Yuan D, Wang M, Jia R, Chen S, Liu M, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Liu Y, Zhang L, Yu Y, Pan L, Chen X, Cheng A. 2020. Emergence of a multidrug-resistant hypervirulent Pasteurella multocida ST342 strain with a floR-carrying plasmid. Journal of Global Antimicrobial Resistance, 20, 348–350.