Arcade A, Labourdette A, Falque M, Mangin B, Chardon F, Charcosset A, Joets J. 2004. BioMercator: Integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics, 20, 2324–2326.
Bensasson D, Griffithsjones S, Collins F S, Lander E S, Rogers J, Waterson R H. 2004. Finishing the euchromatic sequence of the human genome. Nature, 431, 931–945.
Chardon F, Virlon B, Moreau L, Falque M, Joets J, Decousset L, Murigneux A, Charcosset A. 2004. Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome. Genetics, 168, 2169–2185.
Chen Q S, Zhang Z C, Liu C Y, Xin D W, Qiu H M, Shan D P, Shan C Y, Hu G H. 2007. QTL analysis of major agronomic traits in soybean. Agricultural Sciences in China, 6, 399–405.
Chen W, Yao Q, Patil G, Agarwal G, Deshmukh R, Lin L, Wang B, Wang Y, Prince S J, Song L. 2016. Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq. Frontiers in Plant Science, 7, 1044–1044.
Concibido V C, Diers B W, Arelli P R. 2004. A decade of QTL mapping for cyst nematode resistance in soybean. Crop Science, 44, 1121–1131.
Crittenden R A, Playne M J. 1996. Production, properties and applications of food-grade oligosaccharides. Trends in Food Science & Technology, 7, 353–361.
Darvasi A, Soller M. 1997. A simple method to calculate resolving power and confidence interval of QTL map location. Behavior Genetics, 27, 125–132.
Eshed Y, Zamir D. 1995. An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics, 141, 1147–1162.
Espinosa-Martos I, Rupérez P. 2006. Soybean oligosaccharides. Potential as new ingredients in functional food. Nutricion Hospitalaria, 21, 92–96.
Fei B B, Ling L, Hua C, Ren S Y. 2014. Effects of soybean oligosaccharides on antioxidant enzyme activities and insulin resistance in pregnant women with gestational diabetes mellitus. Food Chemistry, 158, 429–432.
Francis S E, Ersoy R A, Ahn J W, Atwell B J, Roberts T H. 2012. Serpins in rice: Protein sequence analysis, phylogeny and gene expression during development. BMC Genomics, 13, 449–449.
Gaiero P, Van De Belt J, Vilaró F, Schranz M E, Speranza P, de Jong H. 2016. Collinearity between potato (Solanum tuberosum L.) and wild relatives assessed by comparative cytogenetic mapping. Genome, 60, 228–240.
Glass G V. 1976. Primary, secondary, and meta-analysis of research. Educational Researcher, 5, 3–8.
Goffinet B, Gerber S. 2000. Quantitative trait loci: A meta-analysis. Genetics, 155, 463–473.
Gong Q C, Yu H X, Mao X R, Qi H D, Yan S, Xiang W, Chen Q S, Qi Z M. 2018. Meta-analysis of soybean amino acid QTLs and candidate gene mining. Journal of Integrative Agriculture, 17, 1074–1084.
Griffiths S, Simmonds J, Leverington M, Wang Y, Fish L, Sayers L, Alibert L, Orford S, Wingen L, Herry L. 2009. Meta-QTL analysis of the genetic control of ear emergence in elite European winter wheat germplasm. Theoretical and Applied Genetics, 119, 383–395.
Hayakawa K, Mizutani J, Wada K, Masai T, Yoshihara I, Mitsuoka T. 1990. Effects of soybean oligosaccharides on human faecal flora. Microbial Ecology in Health and Disease, 3, 293–303.
Huang S, Yu J, Li Y, Wang J, Wang X, Qi H, Xu M, Qin H, Yin Z, Mei H. 2018. Identification of soybean genes related to soybean seed protein content based on quantitative trait loci collinearity analysis. Journal of Agricultural and Food Chemistry, 67, 258–274.
Hymowitz T, Collins F, Panczner J, Walker W. 1972. Relationship between the content of oil, protein, and sugar in soybean seed. Agronomy Journal, 64, 613–616.
Hyten D L, Pantalone V R, Saxton A M, Schmidt M E, Sams C E. 2004. Molecular mapping and identification of soybean fatty acid modifier quantitative trait loci. Journal of the American Oil Chemists’ Society, 81, 1115–1118.
Joshi T, Valliyodan B, Wu J, Lee S, Xu D, Nguyen H T. 2013. Genomic differences between cultivated soybean, G. max and its wild relative G. soja. BMC Genomics, 14, 1–11.
Jun T H, Van K, Kim M Y, Lee S H, Walker D R. 2008. Association analysis using SSR markers to find QTL for seed protein content in soybean. Euphytica, 162, 179–191.
Kiær L P, Skovgaard I M, Østergård H. 2009. Grain yield increase in cereal variety mixtures: A meta-analysis of field trials. Field Crops Research, 114, 361–373.
Kullen M J, Khil J, Busta F F, Gallaher D D, Brady L J. 1998. Carbohydrate source and bifidobacteria influence the growth of Clostridium perfringens in vivo and in vitro. Nutrition Research, 18, 1889–1897.
Lambirth K C, Whaley A M, Blakley I C, Schlueter J A, Bost K L, Loraine A E, Piller K J. 2015. A comparison of transgenic and wild type soybean seeds: Analysis of transcriptome profiles using RNA-Seq. BMC Biotechnology, 15, 89–89.
Lan L H, Ka Z Z, Qi B M, Hai N, Cun Y Y. 2011. Integrated QTLs map of phosphorus efficiency in soybean by Meta-analysis. Chinese Journal of Oil Crop Sciences, 33, 25–32. (in Chinese)
Liu H, Sachidanandam R, Stein L. 2001. Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order. Genome Research, 11, 2020–2026.
Liu J, Jung C, Xu J, Wang H, Deng S, Bernad L, Arenashuertero C, Chua N. 2012. Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. The Plant Cell, 24, 4333–4345.
Lynch M, Walsh B. 1998. Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland, Massachusetts, USA. 
Ma W Y, Liu W, Hou W S, Sun S, Jiang B J, Han T F, Feng Y J, Wu C X. 2019. GmNMH7, a MADS-box transcription factor, inhibits root development and nodulation of soybean (Glycine max [L.] Merr.). Journal of Integrative Agriculture, 18, 553–562.
Matus I, Corey A, Filichkin T, Hayes P, Vales M, Kling J, Riera-Lizarazu O, Sato K, Powell W, Waugh R. 2003. Development and characterization of recombinant chromosome substitution lines (RCSLs) using Hordeum vulgare subsp. spontaneum as a source of donor alleles in a Hordeum vulgare subsp. vulgare background. Genome 46, 1010–1023.
Maughan P, Maroof M S, Buss G. 2000. Identification of quantitative trait loci controlling sucrose content in soybean (Glycine max). Molecular Breeding, 6, 105–111.
Muller P Y, Janovjak H, Miserez A R, Dobbie Z. 2002. Short technical report processing of gene expression data generated by quantitative real-time RT-PCR. Biotechniques, 32, 1372–1379.
Paterson A H, Lander E S, Hewitt J D, Peterson S, Lincoln S E, Tanksley S D. 1988. Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature, 335, 721.
Patterson E L, Fleming M B, Kessler K C, Nissen S J, Gaines T A. 2017. A KASP genotyping method to identify northern watermilfoil, eurasian watermilfoil, and their interspecific hybrids. Frontiers in Plant Science, 8, 752.
Qi Z, Zhang Z, Wang Z, Yu J, Qin H, Mao X, Jiang H, Xin D, Yin Z, Zhu R. 2018. Meta-analysis and transcriptome profiling reveal hub genes for soybean seed storage composition during seed development. Plant Cell and Environment, 41, 2109–2127.
Qi Z M, Wu Q, Han X, Sun Y N, Du X Y, Liu C Y, Jiang H W, Hu G H, Chen Q S. 2011. Soybean oil content QTL mapping and integrating with meta-analysis method for mining genes. Euphytica, 179, 499–514.
Qiang X, Yong L C, Qian B W. 2009. Health benefit application of functional oligosaccharides. Carbohydrate Polymers, 77, 435–441.
Qin H, Liu Z, Wang Y, Xu M, Mao X, Qi H, Yin Z, Li Y, Jiang H, Hu Z. 2018. Meta-analysis and overview analysis of quantitative trait locis associated with fatty acid content in soybean for candidate gene mining. Plant Breeding, 137, 181–193.
Rivero U M, Santamaria O A. 2001. Oligosaccharides: Application in infant food. Early Human Development, 65, S43-S52.
Rotundo J L, Westgate M E. 2009. Meta-analysis of environmental effects on soybean seed composition. Field Crops Research, 110, 147–156.
Saito Y, Takano T, Rowland I. 1992. Effects of soybean oligosaccharides on the human gut microflora in in vitro culture. Microbial Ecology in Health and Disease, 5, 105–110.
Santachiara G, Salvagiotti F, Rotundo J L. 2019. Nutritional and environmental effects on biological nitrogen fixation in soybean: A meta-analysis. Field Crops Research, 240, 106–115.
Schmutz J, Cannon S B, Schlueter J A, Ma J, Mitros T, Nelson W, Hyten D L, Song Q, Thelen J J, Cheng J. 2010. Genome sequence of the palaeopolyploid soybean. Nature, 463, 178–183.
Severin A J, Woody J L, Bolon Y, Joseph B, Diers B W, Farmer A D, Muehlbauer G J, Nelson R T, Grant D, Specht J E. 2010. RNA-Seq atlas of Glycine max: A guide to the soybean transcriptome. BMC Plant Biology, 10, 160–160.
Shi Z, Liu S, Noe J, Arelli P, Meksem K, Li Z. 2015. SNP identification and marker assay development for high-throughput selection of soybean cyst nematode resistance. BMC Genomics, 16, 314.
Tang H, Bowers J E, Wang X, Ming R, Alam M, Paterson A H. 2008. Synteny and collinearity in plant genomes. Science, 320, 486–488.
Visscher P M, Thompson R, Haley C S. 1996. Confidence intervals in QTL mapping by bootstrapping. Genetics, 143, 1013–1020.
Wang P, Ding Y, Lu Q, Guo W, Zhang T. 2008. Development of Gossypium barbadense chromosome segment substitution lines in the genetic standard line TM-1 of Gossypium hirsutum. Chinese Science Bulletin, 53, 1512–1517. 
Wang X Y, Li Q Y, Zhang Q, Huang S Y, Qi Z M. 2019. Identification of soybean genes related to fatty acid content based on a soybean genome collinearity analysis. Plant Breeding, 138, 2.
Wang Y, Tang H, DeBarry J D, Tan X, Li J, Wang X, Lee T H, Jin H, Marler B, Guo H. 2012. MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Research, 40, 49.
Wu J, Wang Q, Kang Z, Liu S, Li H, Mu J, Dai M, Han D, Zeng Q, Chen X. 2017. Development and validation of KASP-SNP markers for QTL underlying resistance to stripe rust in common wheat cultivar P10057. Plant Disease, 101, 2079–2087.
Xin D W, Qi Z M, Jiang H W, Hu Z B, Zhu R S, Liu C Y, Chen Q S. 2016. QTL location and epistatic effect analysis of 100-seed weight using wild soybean (Glycine soja Sieb. & Zucc.) chromosome segment substitution lines. PLoS ONE, 11, 3.
Xu M Y, Liu Z X, Qin H T, Qi H D, Wang Z Y, Mao X R, Xin D W, Hu Z B, Wu X X, Jiang H W. 2018. Identification of novel soybean oil content-related genes using QTL-based collinearity analysis from the collective soybean genome. Journal of Integrative Agriculture, 17, 1727–1735.
Zhan S, Ho S C. 2005. Meta-analysis of the effects of soy protein containing isoflavones on the lipid profile. The American Journal of Clinical Nutrition, 81, 397–408.
Zhang C, Lin C, Fu F, Zhong X, Peng B, Yan H, Zhang J, Zhang W, Wang P, Ding X. 2017. Comparative transcriptome analysis of flower heterosis in two soybean F1 hybrids by RNA-seq. PLoS ONE, 12, 7.
Zhang H, Meltzer P, Davis S. 2013. RCircos: An R package for Circos 2D track plots. BMC Bioinformatics, 14, 244.