Alon U. 2007. Network motifs: theory and experimental approaches. Nature Reviews Genetics, 8, 450–461.

Brandman O, Meyer T. 2008. Feedback loops shape cellular signals in space and time. Science, 322, 390–395.

Cheng C, Motohashi R, Tsuchimoto S, Fukuta Y, Ohtsubo H, Ohtsubo E. 2003. Polyphyletic origin of cultivated rice: Based on the interspersion pattern of SINEs. Molecular Biology and Evolution, 20, 67–75.

Ferrell Jr J E. 2002. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Current Opinion in Cell Biology, 14, 140–148.

Fuller D Q, Sato Y I, Castillo C, Qin L, Weisskopf A R, Kingwell-Banham E J, Song J, Ahn S M, Van Etten J. 2010. Consilience of genetics and archaeobotany in the entangled history of rice. Archaeological and Anthropological Sciences, 2, 115–131.

Hayama R, Yokoi S, Tamaki S, Yano M, Shimamoto K. 2003. Adaptation of photoperiodic control pathways produces short-day flowering in rice. Nature, 422, 719–722.

Hu Y, Li S, Fan X, Song S, Zhou X, Weng X, Xiao J, Li X, Xiong L, You A, Xing Y. 2020. OsHOX1 and OsHOX28 redundantly shape rice tiller angle by reducing HSFA2D expression and auxin content. Plant Physiology, 184, 1424–1437.

Izawa T, Mihara M, Suzuki Y, Gupta M, Itoh H, Nagano A J, Motoyama R, Sawada Y, Yano M, Hirai M Y, Makino A, Nagamura Y. 2011. Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field. The Plant Cell, 23, 1741–1755.

Jin J, Huang W, Gao J P, Yang J, Shi M, Zhu M Z, Luo D, Lin H X. 2008. Genetic control of rice plant architecture under domestication. Nature Genetics, 40, 1365–1369.

Khush G S. 1997. Origin, dispersal, cultivation and variation of rice. Plant Molecular Biology, 35, 25–34.

Kojima S, Takahashi Y, Kobayashi Y, Monna L, Sasaki T, Araki T, Yano M. 2002. Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant and Cell Physiology, 43, 1096–1105.

Li S, Ying Y, Secco D, Wang C, Narsai R, Whelan J, Shou H. 2017. Molecular interaction between PHO2 and GIGANTEA reveals a new crosstalk between flowering time and phosphate homeostasis in Oryza sativa. Plant, Cell & Environment, 40, 1487–1499.

Li S, Yue W, Wang M, Qiu W, Zhou L, Shou H. 2016. Mutation of OsGIGANTEA leads to enhanced tolerance to polyethylene glycol-generated osmotic stress in rice. Frontiers in Plant Science, 7, 465.

Mitrophanov A Y, Groisman E A. 2008. Positive feedback in cellular control systems. BioEssays, 30, 542–555.

Mitrophanov A Y, Hadley T J, Groisman E A. 2010. Positive autoregulation shapes response timing and intensity in two-component signal transduction systems. Journal of Molecular Biology, 401, 671–680.

Miyashiro T, Goulian M. 2008. High stimulus unmasks positive feedback in an autoregulated bacterial signaling circuit. Proceedings of the National Academy of Sciences ot the United States of America, 105, 17457–17462.

Ohgishi M, Oka A, Morelli G, Ruberti I, Aoyama T. 2001. Negative autoregulation of the Arabidopsis homeobox gene ATHB-2. The Plant Journal, 25, 389–398.

Tan L, Li X, Liu F, Sun X, Li C, Zhu Z, Fu Y, Cai H, Wang X, Xie D, Sun C. 2008. Control of a key transition from prostrate to erect growth in rice domestication. Nature Genetics, 40, 1360–1364.

Thomas R, D’ari R.1990. Biological Feedback. CRC Press, Boca Raton, FL.

Wang J, Huang J, Bao J, Li X, Zhu L, Jin J. 2023. Rice domestication-associated transcription factor PROSTRATE GROWTH1 controls plant and panicle architecture by regulating the expression of LAZY1 and OsGIGANTEA, respectively. Molecular Plant, 16, 1413–1426.

Wang W, Gui S, Wang Y. 2023. Uncover the mystery of pleiotropic effects of PROG1 during rice domestication. Molecular Plant, 16, 1722–1723.

Wang X, He Y, Wei H, Wang L. 2021. A clock regulatory module is required for salt tolerance and control of heading date in rice. Plant, Cell & Environment, 44, 3283–3301.

Wei C L, Cao B S, Hua S, Li B G. 2022. Quantitative analysis of the effect of the PAY1 gene on rice canopy structure during different reproductive stages. Journal of Integrative Agriculture, 21, 3488–3500.

Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y, Sasaki T. 2000. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. The Plant Cell, 12, 2473–2484.

Zhang H, Li X, Sang D, Huang L, Song Y, Du M, Cao J, Wang W. 2023. PROG1 acts upstream of LAZY1 to regulate rice tiller angle as a repressor. The Crop Journal, 11, 386–393.