Ambros V. 2004. The functions of animal microRNAs. Nature, 431, 350–355.
Bartel D P. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell, 116, 281–297.
Bridge J, Page S L J. 1982. The rice root-knot nematode, Meloidogyne graminicola, on deep water rice (Oryza sativa) subsp. indica). Revue de Nematologie, 5, 225–232.
Bybd D W, Kirkpatrick T, Barker K R. 1983. An improved technique for clearing and staining plant-tissues for detection of nematodes. Journal of Nematology, 15, 142–43.
Cabrera J, Barcala M, Garcia A, Rio-Machin A, Medina C, Jaubert-Possamai S, Favery B, Maizel A, Ruiz-Ferrer V, Fenoll C, Escobar C. 2016. Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica: A functional role for miR390 and its TAS3-derived tasiRNAs. New Phytologist, 209, 1625–1640.
Carrington J C, Ambros V. 2003. Role of microRNAs in plant and animal development. Science, 301, 336–338.
Castagnone-Sereno P, Danchin E G J, Perfus-Barbeoch L, Abad P. 2013. Diversity and evolution of root-knot nematodes, genus Meloidogyne: New insights from the genomic era. Annual Review of Phytopathology, 51, 203–220.
Chen J, Hu L, Sun L, Lin B, Huang K, Zhuo K, Liao J. 2018. A novel Meloidogyne graminicola effector, MgMO237, interacts with multiple host defence-related proteins to manipulate plant basal immunity and promote parasitism. Molecular Plant Pathology, 19, 1942–1955.
Chen J, Lin B, Huang Q, Hu L, Zhuo K, Liao J. 2017. A novel Meloidogyne graminicola effector, MgGPP, is secreted into host cells and undergoes glycosylation in concert with proteolysis to suppress plant defenses and promote parasitism. PLoS Pathogens, 13, e1006301.
Chen X M. 2005. MicroRNA biogenesis and function in plants. FEBS Letters, 579, 5923–5931.
Coolen M, Katz S, Bally-Cuif L. 2013. miR-9: A versatile regulator of neurogenesis. Frontiers in Cellular Neuroscience, 7, 220.
Ding X, Ye J, Wu X, Huang L, Zhu L, Lin S. 2015. Deep sequencing analyses of pine wood nematode Bursaphelenchus xylophilus microRNAs reveal distinct miRNA expression patterns during the pathological process of pine wilt disease. Gene, 555, 346–356.
Dutta T K, Powers S J, Kerry B R, Gaur H S, Curtis R H C. 2011. Comparison of host recognition, invasion, development and reproduction of Meloidogyne graminicola and M. incognita on rice and tomato. Nematology, 13, 509–520.
Ferris H, Griffiths B S, Porazinska D L, Powers T O, Wang K H, Tenuta M. 2012. Reflections on plant and soil nematode ecology: Past, present and future. Journal of Nematology, 44, 115–126.
Filipowicz W, Bhattacharyya S N, Sonenberg N. 2008. Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight? Nature Reviews Genetics, 9, 102–114.
Gebert L F R, MacRae I J. 2019. Regulation of microRNA function in animals. Nature Reviews Molecular Cell Biology, 20, 21–37.
Goverse A, Smant G. 2014. The activation and suppression of plant innate immunity by parasitic nematodes. Annual Review of Phytopathology, 52, 243–265.
Haegeman A, Bauters L, Kyndt T, Rahman M M, Gheysen G. 2013. Identification of candidate effector genes in the transcriptome of the rice root knot nematode Meloidogyne graminicola. Molecular Plant Pathology, 14, 379–390.
Hewezi T, Baum T J. 2013. Manipulation of plant cells by cyst and root-knot nematode effectors. Molecular Plant–Microbe Interactions, 26, 9–16.
Huang G, Allen R, Davis E L, Baum T J, Hussey R S. 2006. Engineering broad root-knot resistance in transgenic plants by RNAi silencing of a conserved and essential root-knot nematode parasitism gene. Proceedings of the National Academy of Sciences of the United States of America, 103, 14302–1406.
Huang W K, Ji H L, Gheysen G, Kyndt T. 2016. Thiamine-induced priming against root-knot nematode infection in rice involves lignification and hydrogen peroxide generation. Molecular Plant Pathology, 17, 614–624.
Jones J D G, Dangl J L. 2006. The plant immune system. Nature, 444, 323–329.
Kaur P, Shukla N, Joshi G, VijayaKumar C, Jagannath A, Agarwal M, Goel S, Kumar A. 2017. Genome-wide identification and characterization of miRNAome from tomato (Solanum lycopersicum) roots and root-knot nematode (Meloidogyne incognita) during susceptible interaction. PLoS ONE, 12, e0175178.
Kozomara A, Birgaoanu M, Griffiths-Jones S. 2019. miRBase: from microRNA sequences to function. Nucleic Acids Research, 47, D155–D162.
Krueger J, Rehmsmeier M. 2006. RNAhybrid: MicroRNA target prediction easy, fast and flexible. Nucleic Acids Research, 34, W451–W454.
Kyndt T, Fernandez D, Gheysen G. 2014. Plant-parasitic nematode infections in rice: Molecular and cellular insights. Annual Review of Phytopathology, 52, 1–19.
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T. 2001. Identification of novel genes coding for small expressed RNAs. Science, 294, 853–858.
Lee R C, Feinbaum R L, Ambros V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell, 75, 843–854.
Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2–ΔΔCt method. Methods, 25, 402–408.
Mani V, Assefa A D, Hahn B S. 2021. Transcriptome analysis and miRNA target profiling at various stages of root-knot nematode Meloidogyne incognita development for identification of potential regulatory networks. International Journal of Molecular Sciences, 22, 7442.
Mantelin S, Bellafiore S, Kyndt T. 2017. Meloidogyne graminicola: A major threat to rice agriculture. Molecular Plant Pathology, 18, 3–15.
Pan X, Nichols R L, Li C, Zhang B. 2019. MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.). Genomics, 111, 383–390.
Pokharel R R, Abawi G S, Duxbury J M, Smat C D, Wang X, Brito J A. 2010. Variability and the recognition of two races in Meloidogyne graminicola. Australasian Plant Pathology, 39, 326–333.
Quentin M, Abad P, Favery B. 2013. Plant parasitic nematode effectors target host defense and nuclear functions to establish feeding cells. Frontiers in Plant Science, 4, 53.
Rosso M N, Dubrana M P, Cimbolini N, Jaubert S, Abad P. 2005. Application of RNA interference to root-knot nematode genes encoding esophageal gland proteins. Molecular Plant–Microbe Interactions, 18, 615–620.
Schnall-Levin M, Zhao Y, Perrimon N, Berger B. 2010. Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3´ UTRs. Proceedings of the National Academy of Sciences of the United States of America, 107, 15751–15756.
Sevier C S, Kaiser C A. 2002. Formation and transfer of disulphide bonds in living cells. Nature Reviews Molecular Cell Biology, 3, 836–847.
Simon D J, Madison J M, Conery A L, Thompson-Peer K L, Soskis M, Ruvkun G B, Kaplan J M, Kim J K. 2008. The MicroRNA miR-1 regulates a MEF-2-dependent retrograde signal at neuromuscular junctions. Cell, 133, 903–915.
Stolf B S, Ioannis S, Lopes L R, Vendramin A, Goto H, Laurindo F R M, Shah A M, Santos C X C. 2011. Protein disulfide isomerase and host–pathogen interaction. Thescientific World Journal, 11, 1749–1761.
Subramanian P, Choi I C, Mani V, Park J, Subramaniyam S, Choi K H, Sim J S, Lee C M, Koo J C, Hahn B S. 2016. Stage-wise identification and analysis of mirna from root-knot nematode Meloidogyne incognita. International Journal of Molecular Sciences, 17, 1758.
Tian B, Wang S, Todd T C, Johnson C D, Tang G, Trick H N. 2017. Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing. BMC Genomics, 18, 572.
Tian Z, Wang Z, Munawar M, Zheng J. 2020. Identification and characterization of a novel protein disulfide isomerase gene (MgPDI2) from Meloidogyne graminicola. International Journal of Molecular Sciences, 21, 9586.
Tian Z L, Barsalote E M, Li X L, Cai R H, Zheng J W. 2017. First report of root-knot nematode, Meloidogyne graminicola, on rice in Zhejiang, Eastern China. Plant Disease, 101, 2152–2153.
Tian Z L, Wang Z H, Maria M, Qu N, Zheng J W. 2019. Meloidogyne graminicola protein disulfide isomerase may be a nematode effector and is involved in protection against oxidative damage, Scientific Reports, 9, 11949.
Trudgill D L, Blok V C. 2001. Apomictic, polyphagous root-knot nematodes: Exceptionally successful and damaging biotrophic root pathogens. Annual Review of Phytopathology, 39, 53–77.
Verstraeten B, Atighi M R, Ruiz-Ferrer V, Escobar C, De Meyer T, Kyndt T. 2021. Non-coding RNAs in the interaction between rice and Meloidogyne graminicola. BMC Genomics, 22, 560.
Wang C, Lower S, Williamson V M. 2009. Application of pluronic gel to the study of root-knot nematode behaviour. Nematology, 11, 453–464.
Wang Y, Mao Z, Yan J, Cheng X, Liu F, Xiao L, Dai L, Luo F, Xie B. 2015. Identification of microRNAs in Meloidogyne incognita using deep sequencing. PLoS ONE, 10, e0133491.
Wightman B, Ha I, Ruvkun G. 1993. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern-formation in C. elegans. Cell, 75, 855–862.
Zhang B, Wang Q. 2015. MicroRNA-based biotechnology for plant improvement. Journal of Cellular Physiology, 230, 1–15.
Zhang B, Wang Q, Pan X. 2007. MicroRNAs and their regulatory roles in animals and plants. Journal of Cellular Physiology, 210, 279–289.
Zhang Y, Wang Y, Xie F, Li C, Zhang B, Nichols R L, Pan X. 2016. Identification and characterization of microRNAs in the plant parasitic root-knot nematode Meloidogyne incognita using deep sequencing. Functional & Integrative Genomics, 16, 127–142.
Zisoulis D G, Lovci M T, Wilbert M L, Hutt K R, Liang T Y, Pasquinelli A E, Yeo G W. 2010. Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans. Nature Structural & Molecular Biology, 17, 173–179.