中国农业科学 ›› 2026, Vol. 59 ›› Issue (8): 1697-1711.doi: 10.3864/j.issn.0578-1752.2026.08.008

• 植物保护 • 上一篇    下一篇

入侵植物根际溶磷菌的分离鉴定及全基因组测序分析

米春晓1,2(), 张强1,2, 郭佳祺1,2, 樊林染1,2, 李睿颖1,2, 张艳军1,2, 张贵龙1,2, 王慧1,2,*(), 赵建宁1,2,*()   

  1. 1 农业农村部环境保护科研监测所, 天津 300110
    2 天津市农田生态与环境修复技术工程中心, 天津 300191
  • 收稿日期:2025-12-29 接受日期:2026-02-08 出版日期:2026-04-16 发布日期:2026-04-21
  • 通信作者:
    王慧,E-mail:
    赵建宁,E-mail:
  • 联系方式: 米春晓,E-mail:872604507@qq.com。
  • 基金资助:
    国家重点研发计划(2025YFD1700405); 中国农业科学院所级重大科技任务(CAAS-AEPI-2025-02); 所级平台提质增效项目(2025- jbkyywf-wh)

Isolation, Identification and Whole-Genome Sequencing Analysis of Phosphate-Solubilizing Bacteria in Invasive Plant Rhizosphere

MI ChunXiao1,2(), ZHANG Qiang1,2, GUO JiaQi1,2, FAN LinRan1,2, LI RuiYing1,2, ZHANG YanJun1,2, ZHANG GuiLong1,2, WANG Hui1,2,*(), ZHAO JianNing1,2,*()   

  1. 1 Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300110
    2 Tianjin Engineering Center of Agricultural Ecological and Environmental Remediation Technology, Tianjin 300191
  • Received:2025-12-29 Accepted:2026-02-08 Published:2026-04-16 Online:2026-04-21

摘要:

【目的】入侵植物根际土壤中可能蕴藏丰富的溶磷微生物资源,本研究旨在从其根际土壤中分离筛选高效溶磷菌株,为土壤改良和农业可持续发展挖掘具有应用潜力的功能菌株。【方法】以不同生境采集的10份入侵植物根际土壤样品为材料,基于溶磷固体培养基平板筛选和钼锑抗比色法获得高效溶磷菌株并进行分子鉴定,对鉴定出的新菌株进行溶磷能力测定及全基因组测序分析,通过序列组装、基因功能注释、挖掘潜在的磷循环相关功能基因簇及作用机制,分析其磷素利用潜能。【结果】从不同入侵植物根际土壤分离得到16株高效溶磷菌株,经16S rDNA鉴定获得两株新菌,分别命名为IPSM-1和IPSM-2。溶磷量测定结果表明,两株菌的溶磷效率差异显著,IPSM-2的溶磷量高达448.82 mg·L-1,显著高于IPSM-1的243.00 mg·L-1。利用MEGA软件邻接法构建系统进化树,证实了菌株IPSM-1与IPSM-2分别隶属于巨大普里斯特氏菌属(Priestia)和假单胞菌属(Pseudomonas)。采用溶磷圈法评估其溶磷能力,培养10 d后,IPSM-1与IPSM-2的溶磷圈直径与菌落直径之比(D/d)分别为2.07和2.41,结合菌株生长曲线测定结果表明,IPSM-1具有更优的生长特性,而IPSM-2显示出更强的溶磷潜力。通过扫描电镜观察发现两株菌在菌落形态、细胞结构及生长特性方面亦呈现明显差异。全基因组分析显示,IPSM-1基因组大小为5 961 332 bp,GC含量为37.48%,其功能基因在碳水化合物代谢、氨基酸转运及信号转导等通路中显著富集,同时富含磷酸化相关功能基因。IPSM-2 基因组大小为8 746 878 bp,GC含量达67.15%,除在上述代谢与信号通路中基因富集程度更高外,其跨膜运输、金属离子结合相关的基因数量也显著多于IPSM-1,并含有较完整的有机酸合成与分泌基因簇。【结论】获得的两株新型溶磷菌株IPSM-1、IPSM-2具有较高的溶磷效率。其中,IPSM-1可能主要通过胞内磷代谢途径实现溶磷作用,更适合长期低磷胁迫环境;IPSM-2通过分泌有机酸、螯合金属离子等多途径协同溶磷,从而表现出更强的溶磷能力,二者可为开发高效微生物菌肥提供优良的菌种资源。

关键词: 溶磷菌, 入侵植物, 根际微生物, 溶磷能力, 全基因组测序分析

Abstract:

【Objective】The rhizosphere soil of invasive plants may harbor abundant phosphate-solubilizing microbial resources. This study aims to isolate and screen highly efficient phosphate-solubilizing strains from their rhizosphere soil, thereby identifying functional strains with application potential for soil improvement and sustainable agricultural development.【Method】Using rhizosphere soil samples collected from 10 invasive plants across different habitats, efficient phosphate-solubilizing strains were isolated via screening on solid medium and quantified by the molybdenum-antimony colorimetric method. Molecular identification was performed, and two novel strains were selected for further analysis of their phosphate-solubilizing capacity and whole-genome sequencing. Genome assembly, functional annotation, and mining of potential phosphorus-cycling gene clusters and mechanisms were conducted to evaluate their phosphorus utilization potential.【Result】Sixteen efficient phosphate-solubilizing strains were isolated from the rhizosphere soils of different invasive plants. Two novel strains, designated IPSM-1 and IPSM-2, were identified based on 16S rDNA sequencing. The phosphate-solubilizing capacity assay showed a significant difference between the two strains: IPSM-2 released up to 448.82 mg·L-1 of soluble phosphate, significantly higher than the 243.00 mg·L-1 released by IPSM-1. Phylogenetic analysis using the neighbor-joining method in MEGA software confirmed that IPSM-1 and IPSM-2 belong to the genus Priestia and Pseudomonas, respectively. After 10 d of culture, the ratio of phosphate-solubilizing zone diameter to colony diameter (D/d) was 2.07 for IPSM-1 and 2.41 for IPSM-2, indicating stronger solubilization potential by IPSM-2. Growth curve analysis revealed that IPSM-1 exhibited better growth characteristics, whereas IPSM-2 demonstrated higher phosphate-solubilizing potential. Scanning electron microscopy further revealed clear differences in colony morphology, cell structure, and growth features between the two strains. Genomic analysis showed that IPSM-1 has a genome size of 5 961 332 bp with a GC content of 37.48%. Its functional genes were notably enriched in pathways related to carbohydrate metabolism, amino acid transport, and signal transduction, along with a high number of phosphorylation-related genes. In contrast, IPSM-2 possesses a larger genome of 8 746 878 bp with a GC content of 67.15%. Besides stronger enrichment in the aforementioned metabolic and signaling pathways, it also contains significantly more genes involved in transmembrane transport and metal ion binding, as well as relatively complete gene clusters for organic acid synthesis and secretion.【Conclusion】The two novel phosphate-solubilizing strains obtained in this study exhibit high phosphate-solubilizing efficiency. Among them, IPSM-1 may primarily achieve phosphorus dissolution through intracellular phosphorus metabolism pathways, making it more suitable for long-term low-phosphorus stress environments. IPSM-2 exhibits enhanced phosphorus dissolution capacity through multiple mechanisms such as secretion of organic acids and chelation of metal ions. Both strains provide excellent microbial resources for developing efficient microbial fertilizers.

Key words: phosphate-solubilizing bacteria, invasive plant, rhizosphere microorganism, phosphate-solubilizing capacity, whole-genome sequencing analysis