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Journal of Integrative Agriculture
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Identification of long-grain chromosome segment substitution line Z744 and QTL analysis for agronomic traits in rice
MA Fu-ying, DU Jie, WANG Da-chuan, WANG Hui, ZHAO Bing-bing, HE Guang-hua, YANG Zheng-lin, ZHANG Ting, WU Ren-hong, ZHAO Fang-ming
2020, 19 (
5
): 1163-1169. DOI:
10.1016/S2095-3119(19)62751-6
Abstract
(
118
)
PDF in ScienceDirect
Length of grain affects the appearance, quality, and yield of rice. A rice long-grain chromosome segment substitution line Z744, with Nipponbare as the recipient parent and Xihui 18 as the donor parent, was identified. Z744 contains a total of six substitution segments distributed on chromosomes (Chrs.) 1, 2, 6, 7, and 12, with an average substitution length of 2.72 Mb. The grain length, ratio of length to width, and 1 000-grain weight of Z744 were significantly higher than those in Nipponbare. The plant height, panicle number, and seed-set ratio in Z744 were significantly lower than those in Nipponbare, but they were still 78.7 cm, 13.5 per plant, and 86.49%, respectively. Furthermore, eight QTLs of different traits were identified in the secondary F
2
population, constructed by Nipponbare and Z744 hybridization. The grain weight of Z744 was controlled by two synergistic QTLs (
qGWT1
and
qGWT7
) and two subtractive QTLs (
qGWT2
and
qGWT6
), respectively. The increase in the grain weight of Z744 was caused mainly by the increase in grain length. Two QTLs were detected,
qGL1
and
qGL7-3
, which accounted for 25.54 and 15.58% of phenotypic variation, respectively. A Chi-square test showed that the long-grain number and the short-grain number were in accordance with the 3:1 separation ratio, which indicates that the long grain is dominant over the short-grain and Z744 was controlled mainly by the principal effect
qGL1
. These results offered a good basis for further fine mapping of
qGL1
and further dissection of other QTLs into single-segment substitution lines.
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Identification and QTL mapping of Z550, a rice backcrossed inbred line with increased grains per panicle
WANG Shi-ming, CUI Guo-qing, WANG Hui, MA Fu-ying, XIA Sai-sai, LI Yun-feng, YANG Zheng-lin, LING Ying-hua, ZHANG Chang-wei, HE Guang-hua, ZHAO Fang-ming
2019, 18 (
3
): 526-531. DOI:
10.1016/S2095-3119(18)61996-3
Abstract
(
253
)
PDF
(310KB)(
469
)
An elite backcrossed inbred line Z550 with increased grains per panicle was identified from advanced backcrosses between Nipponbare and Xihui 18 by simple sequence repeat (SSR) marker-assisted selection (MAS). Z550 carries 13 substitution segments distributed on chromosomes 1, 6, 7, 8, 9, 10, and 12, with an average substitution length of 1.68 Mb. Compared with the Nipponbare parental line, plant height, panicle length, spikelets per panicle, grains per panicle, and grain weight for Z550 were significantly increased. While the grain width of Z550 was significantly narrower, and the seed setting ratio (81.43%) was significantly lower than that of Nipponbare, it is still sufficient for breeding purposes. Quantitative trait loci (QTLs) mapping for important agronomic traits was conducted with the F
2
population derived from Nipponbare crossed with Z550 using the restricted maximum likelihood (REML) method. A total of 16, including 12 previously unreported QTLs were detected, with contribution rates ranging from 1.46 to 10.49%. Grains per panicle was controlled by 8 QTLs, 5 of which increased number of grains whereas 3 decreased it.
qGPP-1
, with the largest contribution (10.49%), was estimated to increase grains per panicle by 30.67, while
qGPP-9,
with the minimum contribution rate (2.47%), had an effect of increasing grains per panicle by 15.79. These results will be useful for further development of single segment substitution lines with major QTLs, and for research of their molecular functions via QTL cloning.
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Phenotypic characterization and fine mapping of
mps1
, a premature leaf senescence mutant in rice (
Oryza sativa
L.)
LIU Zhong-xian, CUI Yu, WANG Zhong-wei, XIE Yuan-hua, SANG Xian-chun, YANG Zheng-lin, ZHANG Chang-wei, ZHAO Fang-ming, HE Guang-hua, LING Ying-hua
2016, 15 (
9
): 1944-1954. DOI:
10.1016/S2095-3119(15)61279-5
Abstract
(
1857
)
PDF in ScienceDirect
Leaves play a key role in photosynthesis in rice plants. The premature senescence of such plants directly reduces the accumulation of photosynthetic products and also affects yield and grain quality significantly and negatively. A novel premature senescence mutant,
mps1
(
mid-late stage premature senescence 1
), was identified from a mutant library consisting of ethyl methane sulfonate (EMS) induced descendants of Jinhui 10, an elite indica restorer line of rice. The mutant allele,
mps1
, caused no phenotypic differences from the wild type (WT), Jinhui 10, but drove the leaves to turn yellow when mutant plants grew to the tillering stage, and accelerated leaf senescence from the filling stage to final maturation. We characterized the agronomic traits, content of photosynthetic pigments and photosynthetic efficiency of
mps1
and WT, and fine-mapped
MPS1
. The results showed that the
MPS1
-drove premature phenotype appeared initially on the leaf tips at the late tillering stage and extended to the middle of leaves during the maturing stage. Compared to the WT, significant differences were observed among traits of the number of grains per panicle (–31.7%) and effective number of grains per panicle (–38.5%) of
mps1
individuals. Chlorophyll contents among the first leaf from the top (Top 1st), the second leaf from the top (Top 2nd) and the third leaf from the top (Top 3rd) of mps1 were significantly lower than those of WT (
P
<0.05), and the levels of photosynthetic efficiency from Top 1st to the forth leaf from the top (Top 4th) of
mps1
were significantly lower than those of WT (
P
<0.01). Results from the genetic analysis indicated that the premature senescence of
mps1
is controlled by a recessive nuclear gene, and this locus,
MPS1
is located in a 37.4-kb physical interval between the markers Indel145 and Indel149 on chromosome 6. Genomic annotation suggested eight open reading frames (ORFs) within this physical region. All of these results will provide informative references for the further researches involving functional analyses and molecular mechanism exploring of
MPS1
in rice.
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Identification and Gene Mapping of a multi-floret spikelet 1 (mfs1) Mutant Associated with Spikelet Development in Rice
REN De-yong*, LI Yun-feng*, WANG Zeng, XU Fang-fang, GUO Shuang, ZHAO Fang-ming, SANG Xianchun, LING ing-hua, HE Guang-hua
2012, 12 (
10
): 1574-1579. DOI:
10.1016/S1671-2927(00)8690
Abstract
(
1647
)
PDF in ScienceDirect
In this study, a rice spikelet mutant, multi-floret spikelet 1 (mfs1), which was derived from ethylmethane sulfonate (EMS)- treated Jinhui 10 (Oryza sativa L. ssp. indica) exhibited pleiotropic defects in spikelet development. The mfs1 spikelet displayed degenerated the empty glume, elongated the rachilla, the extra lemma-like organ and degraded the palea. Additionally, mfs1 flowers produced varied numbers of inner floral organs. The genetic analysis revealed that the mutational trait was controlled by a single recessive gene. With 401 recessive individuals from the F2 segregation population, the MFS1 gene was finally mapped on chromosome 5, an approximate 350 kb region. The present study will be useful for cloning and functional analysis of MFS1, which would facilitate understanding of the molecular mechanism involved in spikelet development in rice.
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