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Analysis of genetic diversity and population structure in sweetpotato using SSR markers
LIU Cheng, ZHAO Ning, JIANG Zhi-cheng, ZHANG Huan, ZHAI Hong, HE Shao-zhen, GAO Shao-pei, LIU Qing-chang
2023, 22 (11): 3408-3415.   DOI: 10.1016/j.jia.2023.02.004
Abstract196)      PDF in ScienceDirect      
Sweetpotato, Ipomoea batatas (L.) Lam., is an important food crop worldwide.  Large scale evaluation of sweetpotato germplasm for genetic diversity is necessary to determine the genetic relationships between them and effectively use them in the genetic improvement.  In this study, the genetic diversity of 617 sweetpotato accessions, including 376 landraces and 162 bred varieties from China and 79 introduced varieties from 11 other countries, was assessed using 30 simple sequence repeat (SSR) primer pairs with high polymorphism.  Based on the population structure analysis, these sweetpotato accessions were divided into three groups, Group 1, Group 2 and Group 3, which included 228, 136 and 253 accessions, respectively.  Consistent results were obtained by phylogenic analysis and principal coordinate analysis (PCoA).  Of the three groups, Group 2 showed the highest level of genetic diversity and its accessions were mainly distributed in low-latitude regions.  The accessions from South China exhibited the highest level of genetic diversity, which supports the hypothesis that Fujian and Guangdong were the first regions where sweetpotato was introduced to China.  Analysis of molecular variance (AMOVA) indicated significant genetic differentiations between the different groups, but low levels of genetic differentiation existed between the different origins and accession types.  These results provide valuable information for the better utilization of these accessions in sweetpotato breeding.
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Study on burrowing nematode, Radopholus similis, pathogenicity test system in tobacco as host
YANG Si-hua, ZHAO Li-rong, DING Sha, TANG Shi-qiao, CHEN Chun, ZHANG Huan-xin, XU Chun-ling, XIE Hui
2022, 21 (9): 2652-2664.   DOI: 10.1016/j.jia.2022.07.021
Abstract152)      PDF in ScienceDirect      

Radopholus similis (Cobb 1893) Thorne (1949) is a destructive migratory endoparasitic plant nematode.  In this study, the pathogenic process of Rsimilis infection in Nicotiana benthamiana (tobacco) was studied using quartz sand culture in laboratory.  The results showed that Rsimilis mainly parasitised the root cortex, leading to cortical cell decomposition and tissue decay.  We optimised the inoculation conditions to establish a method for determining the pathogenicity of Rsimilis as follows: (1) a glass culture tube was filled with quartz sand (about 1/3 of the height) and sterilised twice; (2) 20-day-old Nbenthamiana seedlings were transplanted into test tubes and cultivated for 10 days at (25±1)°C; (3) Rsimilis female nematodes were inoculated in the root rhizosphere at a rate of 150 nematodes per plant; (4) the number of nematodes, disease severity, and growth of the plant at 30 days post-inoculation (dpi) were determined.  The pathogenicity of eight Rsimilis populations from different hosts was determined, which proved the feasibility of this method.

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A geranylgeranyl pyrophosphate synthase gene, IbGGPS, increases carotenoid contents in transgenic sweetpotato
LI Rui-jie, ZHAI Hong, HE Shao-zhen, ZHANG Huan, ZHAO Ning, LIU Qing-chang
2022, 21 (9): 2538-2546.   DOI: 10.1016/j.jia.2022.07.029
Abstract234)      PDF in ScienceDirect      

Geranylgeranyl pyrophosphate synthase (GGPS) plays an important role in the biosynthesis of carotenoids.  In a previous study, the IbGGPS gene was isolated from a sweetpotato, Ipomoea batatas (L.) Lam., line Nongdafu 14 with high carotenoid contents, but its role and underlying mechanisms in carotenoid biosynthesis in sweetpotato were not investigated.  In the present study, the IbGGPS gene was introduced into a sweetpotato cv. Lizixiang and the contents of β-carotene, β-cryptoxanthin, zeaxanthin and lutein were significantly increased in the storage roots of the IbGGPS-overexpressing sweetpotato plants.  Further analysis showed that IbGGPS gene overexpression systematically up-regulated the genes involved in the glycolytic, 2-C-methyl-D-erythritol-4-phosphate (MEP) and carotenoid pathways, which increased the carotenoid contents in the transgenic plants.  These results indicate that the IbGGPS gene has the potential for use in improving the carotenoid contents in sweetpotato and other plants.

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Transcriptome and phytochemical analyses reveal roles of characteristic metabolites in the taste formation of white tea during withering process
ZHOU Cheng-zhe, ZHU Chen, LI Xiao-zhen, CHEN Lan, XIE Si-yi, CHEN Guang-wu, ZHANG Huan, LAI Zhong-xiong, LIN Yu-ling, GUO Yu-qiong
2022, 21 (3): 862-877.   DOI: 10.1016/S2095-3119(21)63785-1
Abstract271)      PDF in ScienceDirect      
In the postharvest processing of tea leaves, withering is the first indispensable manufacturing process which produces the mellow, umami and sweet taste of white tea.  In this study, we aimed to determine the dynamic changes of the main metabolites and clarify the key differentially expressed genes (DEGs) involved in forming the characteristic taste of white tea during withering.  Phytochemical analyses revealed that the contents of total catechins and starch decreased continuously, whereas the contents of theaflavin, γ-aminobutyric acid (GABA), maltose, and soluble sugars increased significantly during withering (from 0–48 h).  Meanwhile, the elevation of α-amylase (AMY), β-amylase (BAM), total amylase, and glutamate decarboxylase (GAD) activities may be correlated with the accumulation of GABA and maltose.  By transcriptome sequencing, we detected 9 707, 15 921, 17 353, and 17 538 DEGs at 12, 24, 36, and 48 h of the withering process, respectively, compared with 0 h sample (fresh leaves).  The transcript levels of most of the DEGs involved in catechin biosynthesis were significantly inhibited, whereas those involved in catechin oxidation were significantly up-regulated, which could be correlated to a decrease in catechin content and an increase in theaflavin content.  The DEGs involved in GABA biosynthesis were considerably up-regulated, and the down-regulation of SPMS could reduce the competition for converting spermidine to GABA.  The up-regulation of the AMY and BAM genes could trigger starch degradation, resulting in the increase of soluble sugar content.  These results provide new insights into the importance of the withering process to the characteristic taste of white tea.
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Genomic and transcriptomic insights into cytochrome P450 monooxygenase genes involved in nicosulfuron tolerance in maize (Zea mays L.)
LIU Xiao-min, XU Xian, LI Bing-hua, YAO Xiao-xia, ZHANG Huan-huan, WANG Gui-qi, HAN Yu-jun
2018, 17 (08): 1790-1799.   DOI: 10.1016/S2095-3119(18)61921-5
Abstract375)      PDF in ScienceDirect      
Postemergence application of nicosulfuron for weed control in maize fields can cause great damage to certain maize inbred lines and hybrids.  Two maize genotypes, tolerant inbred (HBR) and sensitive inbred (HBS), were found to significantly differ in their phenotypic responses to nicosulfuron, with the EC50 (50% effective concentration) values differed statistically (763.6 and 5.9 g a.i. ha–1, respectively).  Pre-treatment with malathion, a known cytochrome P450 inhibitor, increased nicosulfuron injury in both HBR and HBS.  Our results support the hypothesis that nicosulfuron selectivity in maize is associated with cytochrome P450 metabolism.  Further analysis of the maize genome resulted in the identification of 314 full length cytochrome P450 monooxygenase (CYP) genes.  These genes were classified into 2 types, 10 clans and 44 families.  The CYP71 clan was represented by all A-type genes (168) belonging to 17 families.  Nine clans possessed 27 families containing 146 non-A-type genes.  The consensus sequences of the heme-binding regions of A-type and non-A-type CYP proteins are ‘PFGXGRRXCPG’ and ‘FXXGPRXCXG’, respectively.  Illumina transcriptome sequence results showed that there were 53 differentially expressed CYP genes on the basis of high variation in expression between HBS and HBR, nicosulfuron-treated and untreated samples.  These genes may contribute to nicosulfuron tolerance in maize.  A hierarchical clustering analysis obtained four main clusters named C1 to C4 in which 4, 15, 21, and 13 CYP genes were found in each respective cluster.  The expression patterns of some CYP genes were confirmed by RT-qPCR analysis.  The research will improve our understanding of the function of maize cytochrome P450 in herbicide metabolism.
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Characterization of salt tolerance and Fusarium wilt resistance of a sweetpotato mutant
ZHANG Huan, ZHANG Qian, WANG Yan-nan, LI Yan, ZHAI Hong, LIU Qing-chang, HE Shao-zhen
2017, 16 (09): 1946-1955.   DOI: 10.1016/S2095-3119(16)61519-8
Abstract720)      PDF in ScienceDirect      
   The variant LM1 was previously obtained using embryogenic cell suspension cultures of sweetpotato variety Lizixiang by gamma-ray induced mutation, and then its characteristics were stably inherited through six clonal generations, thus this mutant was named LM1. In this study, systematic characterization of salt tolerance and Fusarium wilt resistance were performed between Lizixiang and mutant LM1. LM1 exhibited significantly higher salt tolerance compared to Lizixiang. The content of proline and activities of superoxide dismutase (SOD) and photosynthesis were significantly increased, while malonaldehyde (MDA) and H2O2 contents were significantly decreased compared to that of Lizixiang under salt stress. The inoculation test with Fusarium wilt showed that its Fusarium wilt resistance was also improved. The lignin, total phenolic, jasmonic acid (JA) contents and SOD activity were significantly higher, while H2O2 content was significantly lower in LM1 than that in Lizixiang. The expression level of salt stress-responsive and disease resistance-related genes was significantly higher in LM1 than that in Lizixiang under salt and Fusarium wilt stresses, respectively. This result provides a novel and valuable material for improving the salt tolerance and Fusarium wilt resistance of sweetpotato.
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A plastidic ATP/ADP transporter gene, IbAATP, increases starch and amylose contents and alters starch structure in transgenic sweetpotato
WANG Yan-nan, LI Yan, ZHANG Huan, ZHAI Hong, LIU Qing-chang, HE Shao-zhen
2016, 15 (9): 1968-1982.   DOI: 10.1016/S2095-3119(15)61192-3
Abstract1320)      PDF in ScienceDirect      
    A plastidic adenosine triphosphate (ATP)/adenosine diphosphate (ADP) transporter (AATP) is responsible for importing ATP from the cytosol into plastids. In dicotyledonous plants, increasing ATP supply is a potential way to facilitate anabolic synthesis in heterotrophic plastids. In this study, a gene encoding the AATP protein, named IbAATP, was isolated from sweetpotato (Ipomoea batatas (L.) Lam.). Transcripts of IbAATP were predominantly detected in the storage roots and leaves and were induced by exogenous sucrose and subjected to circadian rhythm. Transient expression of IbAATP in tobacco and onion epidermal cells revealed the plastidic localization of IbAATP. The overexpression of IbAATP in sweetpotato significantly increased the starch and amylose contents and led to enlarged starch granules. The IbAATP-overexpressing plants showed altered fine structure of amylopectin, which contained an increased proportion of chains with a degree of polymerization (DP) of 10–23 and a reduced number of chains with a DP of 5–9 and 24–40. In addition, starch from the transgenic plants exhibited different pasting properties. The transcript levels of starch biosynthetic genes, including IbAGP, IbGBSSI, IbSSI-IV, and IbSBE, were differentially regulated in the transgenic plants. These results revealed the explicit role of IbAATP in the starch biosynthesis of sweetpotato and indicated that this gene has the potential to be used to improve starch content and quality in sweetpotato and other plants.
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