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Transcriptional activation of MdDEF30 by MdWRKY75 enhances apple resistance to Cytospora canker 
Hongchen Jia, Youwei Du, Yuanyuan Liu, Shuanghong Wang, Yan Wang, Sadia Noorin, Mark L. Gleason, Rong Zhang, Guangyu Sun
2025, 24 (3): 1108-1125.   DOI: 10.1016/j.jia.2024.06.001
Abstract88)      PDF in ScienceDirect      
Defensin, an essential component of plant development, is indispensable in pathogen resistance.  However, the molecular function of defensins under pathological conditions of Cytospora canker has not been characterized in apple plants.  The present study exhibits a detailed overview of the phylogeny and structure of 29 defensins (MdDEF) in apple.  Expression analysis revealed that MdDEF genes were spatiotemporally diverse across apple tissues.  Five MdDEF genes were found to be significantly up-regulated following a challenge with Cytospora mali.  The transgenic overexpression of five defensin genes in apple calli enhanced resistance to Cmali.  Among them, MdDEF30 was strongly induced and conferred the highest resistance level in vivo.  Meanwhile, antifungal activity assays in vitro demonstrated that a recombinant protein produced from MdDEF30 could inhibit the growth of Cmali.  Notably, MdDEF30 promoted the accumulation of reactive oxygen species (ROS) and activated defense-related genes such as PR4, PR10, CML13, and MPK3.  Co-expression regulatory network analysis showed that MdWRKY75 may regulate the expression of MdDEF30.  Further yeast one-hybrid (Y1H), luciferase, and chromatin Immunoprecipitation quantitative polymerase chain reaction (ChIP-qPCR) assays verified that MdWRKY75 could directly bind to the promoter of MdDEF30.  Importantly, pathogen inoculation assays confirmed that MdWRKY75 positively regulates resistance by transcriptionally activating MdDEF30.  Overall, these results demonstrated that MdDEF30 promotes resistance to Cmali in apple plants and that MdWRKY75 regulates MdDEF30 expression during the induction of resistance, thereby clarifying biochemical mechanisms of resistance to Cmali in apple trees.


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On-site visual detection of Nipah virus combining a reverse transcription recombinase-aided amplification with a lateral-flow dipstick assay
Kaikai Jin, Junjie Zhao, Huanxin Chen, Zimo Zhang, Zengguo Cao, Zanheng Huang, Hao Li, Yongsai Liu, Lisi Ai, Yufei Liu, Changqi Fan, Yuanyuan Li, Pei Huang, Hualei Wang, Haili Zhang
2025, 24 (2): 790-794.   DOI: 10.1016/j.jia.2024.11.018
Abstract46)      PDF in ScienceDirect      
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A rapid and visual detection method for Crimean-Congo hemorrhagic fever virus by targeting S gene

Xingqi Liu, Zengguo Cao, Boyi Li, Pei Huang, Yujie Bai, Jingbo Huang, Zanheng Huang, Yuanyuan Zhang, Yuanyuan Li, Haili Zhang, Hualei Wang
2024, 23 (6): 2149-2153.   DOI: 10.1016/j.jia.2024.03.050
Abstract107)      PDF in ScienceDirect      
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Nitrogen application regulates antioxidant capacity and flavonoid metabolism, especially quercetin, in grape seedlings under salt stress
Congcong Zhang, Han Wang, Guojie Nai, Lei Ma, Xu Lu, Haokai Yan, Meishuang Gong, Yuanyuan Li, Ying Lai, Zhihui Pu, Li Wei, Guiping Chen, Ping Sun, Baihong Chen, Shaoying Ma, Sheng Li
2024, 23 (12): 4074-4092.   DOI: 10.1016/j.jia.2024.07.013
Abstract174)      PDF in ScienceDirect      
Salt stress is a typical abiotic stress in plants that causes slow growth, stunting, and reduced yield and fruit quality.  Fertilization is necessary to ensure proper crop growth.  However, the effect of fertilization on salt tolerance in grapevine is unclear.  In this study, we investigated the effect of nitrogen fertilizer (0.01 and 0.1 mol L–1 NH4NO3) application on the salt (200 mmol L–1 NaCl) tolerance of grapevine based on physiological indices, and transcriptomic and metabolomic analyses.  The results revealed that 0.01 mol L–1 NH4NO3 supplementation significantly reduced the accumulation of superoxide anion (O2·), enhanced the activities of superoxide dismutase (SOD) and peroxidase (POD), and improved the levels of ascorbic acid (AsA) and glutathione (GSH) in grape leaves compared to salt treatment alone.  Specifically, joint transcriptome and metabolome analyses showed that the differentially expressed genes (DEGs) and differentially accumulated metabolites (DAMs) were significantly enriched in the flavonoid biosynthesis pathway (ko00941) and the flavone and flavonol biosynthesis pathway (ko00944).  In particular, the relative content of quercetin (C00389) was markedly regulated by salt and nitrogen.  Further analysis revealed that exogenous foliar application of quercetin improved the SOD and POD activities, increased the AsA and GSH contents, and reduced the H2O2 and O2· contents.  Meanwhile, 10 hub DEGs, which had high Pearson correlations (R2>0.9) with quercetin, were repressed by nitrogen.  In conclusion, all the results indicated that moderate nitrogen and quercetin application under salt stress enhanced the antioxidant system defense response, thus providing a new perspective for improving salt tolerance in grapes.


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Assessing the yield difference of double-cropping rice in South China driven by radiation use efficiency
Jian Lu, Sicheng Deng, Muhammad Imran, Jingyin Xie, Yuanyuan Li, Jianying Qi, Shenggang Pan, Xiangru Tang, Meiyang Duan
2024, 23 (11): 3692-3705.   DOI: 10.1016/j.jia.2023.10.006
Abstract104)      PDF in ScienceDirect      
Double-cropping rice in South China continues to break the total yield record, but the yield potential of single-cropping rice is not being realized.  Radiation use efficiency (RUE) has been singled out as an important determinant of grain yield in many cereal species.  However, there is no information on whether the yield gaps in double-cropping rice involve differences in RUE.  Field experiments were performed over two years to evaluate the effects of intercepted radiation (IP) and RUE on the above-ground biomass production, crop growth rate (CGR), and harvest index (HI), in four representative rice varieties, i.e., Xiangyaxiangzhan (XYXZ), Meixiangzhan 2 (MXZ2), Nanjingxiangzhan (NJXZ), and Ruanhuayoujinsi (RHYJS), during the early and late seasons of rice cultivation in South China.  The results revealed that grain yield in the early season was 8.2% higher than in the late season.  The yield advantage in the early season was primarily due to higher spikelets per panicle and above-ground biomass resulting from a higher RUE.  The spikelets per panicle in the early season were 6.5, 8.3, 6.9, and 8.5% higher in XYXZ, MXZ2, NJXZ, and RHYJS, respectively, than in the late season.  The higher early season grain yield was more closely related to RUE in the middle tillering stage (R2=0.34), panicle initiation (R2=0.16), and maturation stage (R2=0.28), and the intercepted photosynthetically active radiation (IPAR) in the maturation stage (R2=0.28), while the late season grain yield was more dependent on IPAR in the middle tillering stage (R2=0.31) and IPAR at panicle initiation (R2=0.23).  The results of this study conclusively show that higher RUE contributes to the yield progress of early season rice, while the yield improvement of late season rice is attributed to higher radiation during the early reproductive stage.  Rationally allocating the RUE of double-cropping rice with high RUE varieties or adjustments of the sowing period merits further study.


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A candidate tick-borne encephalitis virus vaccine based on virus-like particles induces specific cellular and humoral immunity in mice
Mengyao Zhang, Hongli Jin, Cuicui Jiao, Yuanyuan Zhang, Yujie Bai, Zhiyuan Gong, Pei Huang, Haili Zhang, Yuanyuan Li, Hualei Wang
DOI: 10.1016/j.jia.2024.09.024 Online: 26 September 2024
Abstract40)      PDF in ScienceDirect      

Tick-borne encephalitis (TBE) is an important zoonotic viral disease transmitted by ticks. In recent decades, global climate change has increased human exposure to ticks, and mortality rates have gradually risen. Effective vaccines are essential for controlling TBE as specific antiviral treatment is unavailable. Vaccine candidates based on virus-like particles (VLPs) have previously been demonstrated to be efficient in eliciting excellent immune responses against influenza virus and SARS-CoV-2. Here, we constructed TBE virus (TBEV) VLPs containing the envelope and membrane proteins derived from the Far Eastern TBEV strain (WH2012) using an insect cell-baculovirus expression system. Induction of immune responses was investigated in mice following intramuscular injection with the TBEV VLPs vaccine candidates formulated of Poly(I:C) & Montanide ISA 201VG combination adjuvants. Mice produced memory T-cells and serum-specific IgG antibodies that averaged up to 1:104.6 and remained at 1:104 (mean) for 24 weeks after three immunizations. TBEV VLPs vaccine was able to provide long-term antibody protection against TBEV, making it a promising subunit vaccine candidate for this disease.

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Genome- and transcriptome-wide association studies reveal the genetic basis of seed palmitic acid content in Brassica napus
Haijiang Liu, Yongheng Yuan, YunShan Tang, RuoShui Li, Kaijie Ye, Mengzhen Zhang, Kun Lu, Nengwen Yin, Huiyan Zhao, Yuanyuan Liu, Taocui Huang, Rui Wang, Lei Shi, Hai Du, Cunmin Qu
DOI: 10.1016/j.jia.2024.11.015 Online: 12 November 2024
Abstract16)      PDF in ScienceDirect      

Rapeseed (Brassica napus L.) is one of the most important oilseed crops worldwide.  Development of rapeseed varieties with high-quality oil is a long-term breeding goal.  Reducing the contents of palmitic acid, the main saturated fatty acid in rapeseed oil, could greatly improve oil quality.  Here, we performed genome-wide association study (GWAS) and transcriptome-wide association study (TWAS) of seed palmitic acid content (SPAC) using 393 diverse B. napus accessions.  Four genes (BnaA08.DAP, BnaA08.PAA1, BnaA08DUF106, and BnaC03.DAP) were identified by both GWAS and TWAS.  The transcripts per million (TPM) values of these candidate genes at 20 and 40 days after flowering (DAF) were significantly correlated with SPAC in this association panel.  Based on genetic variation in the candidate genes, we identified four low-SPAC haplotypes by combining candidate gene association analysis and haplotype analysis.  Brassica napus accessions carrying low-SPAC haplotypes had lower SPAC than those carrying high-SPAC haplotypes without affecting seed oil content, seed protein content, or seed yield.  Based on the functional single-nucleotide polymorphism (SNP) chrA08_9529850 (C/A) in the promoter of BnaA08.DUF106, we developed a molecular marker (Bn_A8_SPAC_Marker) that could be used to facilitate breeding for low SPAC in B. napus.  Our findings provide valuable information for studying the genetic control of SPAC in B. napus.  Moreover, the candidate genes, favorable haplotypes, and molecular marker identified in this study will be useful for breeding low-SPAC B. napus varieties.

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