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Multi-omics-driven development of alternative crops for natural rubber production
YANG Ning, YANG Dan-dan, YU Xu-chen, XU Cao
2023, 22 (4): 959-971.   DOI: 10.1016/j.jia.2023.03.007
Abstract424)      PDF in ScienceDirect      

Natural rubber (NR) is an irreplaceable biopolymer of economic and strategic importance owing to its unique physical and chemical properties.  The Pará rubber tree (Hevea brasiliensis (Willd. ex A. Juss.) Müll. Arg.) is currently the exclusive commercial source of NR, and it is primarily grown in plantations restricted to the tropical and subtropical areas of Southeast Asia.  However, current Pará rubber production barely meets the sharply increasing global industrial demand for rubber.  Petroleum-based synthetic rubber (SR) has been used to supplement the shortage of NR but its industrial performance is not comparable to that of NR.  Thus, there is an urgent need to develop new productive rubber crops with broader environmental adaptability.  This review summarizes the current research progress on alternative rubber-producing plants, including horticultural plants (Taraxacum kok-saghyz Rodin and Lactuca L. species), woody plants (Parthenium argentatum A. Gray and Eucommia ulmoides Oliv.), and other plant species with potential for NR production.  With an emphasis on the molecular basis of NR biosynthesis revealed by a multi-omics approach, we highlight new integrative strategies and biotechnologies for exploring the mechanism of NR biosynthesis with a broader scope, which may accelerate the breeding and improvement of new rubber crops. 

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QTL analysis of early flowering of female flowers in zucchini (Cucurbita pepo L.)
QU Shu-ping, YANG Dan, YU Hai-yang, CHEN Fang-yuan, WANG Ke-xin, DING Wen-qi, XU Wen-long, WANG Yun-li
2023, 22 (11): 3321-3330.   DOI: 10.1016/j.jia.2022.09.009
Abstract188)      PDF in ScienceDirect      

Early flowering promotes early maturity, production, and the capacity to counteract biotic and abiotic stresses, making it an important agronomic trait in zucchini.  The present study demonstrated that the zucchini inbred line ‘19’ consistently flowered early, taking significantly fewer days to bloom the first female flower (DFF) than the inbred line ‘113’.  Genetic analysis revealed that DFF, an inheritable quantitative trait, is controlled by multiple genes.  Based on the strategy of quantitative trait locus (QTL) sequencing (QTL-seq) combined with linkage analysis, three QTLs for DFF were identified on chromosomes 4, 11, and 20.  This study used additional F2 populations grown under different environmental conditions for QTL mapping analysis of DFF with insertion/deletion (InDel) markers to validate these results.  Using the composite interval mapping (CIM) method of R/qtl software, we only identified one major locus under all environmental conditions, located in a 117-kb candidate region on chromosome 20.  Based on gene annotation, gene sequence alignment, and qRT-PCR analysis, we found that the Cp4.1LG20g08050 gene encoding a RING finger protein may be a candidate gene for the opposite regulation of early flowering in zucchini.  In summary, these results lay a foundation for a better understanding of early flowering and improving early flowering-based breeding strategies in zucchini.

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Do cooperatives participation and technology adoption improve farmers’ welfare in China?  A joint analysis accounting for selection bias
YANG Dan, ZHANG Hui-wei, LIU Zi-min, ZENG Qiao
2021, 20 (6): 1716-1726.   DOI: 10.1016/S2095-3119(20)63325-1
Abstract233)      PDF in ScienceDirect      
This study examines the impact of farmers’ cooperatives participation and technology adoption on their economic welfare in China.  A double selectivity model (DSM) is applied to correct for sample selection bias stemming from both observed and unobserved factors, and a propensity score matching (PSM) method is applied to calculate the agricultural income difference with counter factual analysis using survey data from 396 farmers in 15 provinces in China.  The findings indicate that farmers who join farmer cooperatives and adopt agricultural technology can increase agricultural income by 2.77 and 2.35%, respectively, compared with those non-participants and non-adopters.  Interestingly, the effect on agricultural income is found to be more significant for the low-income farmers than the high-income ones, with income increasing 5.45 and 4.51% when participating in farmer cooperatives and adopting agricultural technology, respectively.  Our findings highlight the positive role of farmer cooperatives and agricultural technology in promoting farmers’ economic welfare.  Based on the findings, government policy implications are also discussed.
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Effect of Different Rice-Crab Coculture Modes on Soil Carbohydrates
YAN Ying, LIU Ming-da, YANG Dan, ZHANG Wei, AN Hui, WANG Yao-jing, XIE Hong-tu
2014, 13 (3): 641-647.   DOI: 10.1016/S2095-3119(13)60722-4
Abstract1601)      PDF in ScienceDirect      
Traditional agricultural systems have contributed to food and livelihood security. Rice-crab coculture (RC) is an important eco-agricultural process in rice production in northern China. Recognizing the soil fertility in RC may help develop novel sustainable agriculture. Soil carbohydrates are important factors in determining soil fertility in different culture modes. In this study, soil carbohydrates were analyzed under three different culture modes including rice monoculture (RM), conventional rice-crab coculture (CRC) and organic rice-crab coculture (ORC). Results showed that the contents of soil organic carbon and carbohydrates were significantly higher in the ORC than those in RM. The increasing effect was greater with increased organic manure. Similar tendency was found in CRC, but the overall effect was less pronounced compared with ORC. Carbohydrates were more sensitive to RC mode and manure amendment than soil organic carbon. Compare to RM, the (Gal+Man)/(Ara+Xyl) ratio decreased in all the RC modes, indicating a relative enrichment in plant-derived carbohydrates due to the input of crab feed and manure. While the increasing (Gal+Man)/(Ara+Xyl) ratio in ORC modes with increased organic manure suggested that crab activity and metabolism induced microbially derived carbohydrates accumulation. The lower GluN/MurA ratio in ORC indicated an enhancement of bacteria contribution to SOM turnover in a short term. The findings reveal that the ORC mode could improve the quantity and composition of soil carbohydrates, effectively, to ensure a sustainable use of paddy soil.
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Effects of Elevated Ozone Concentration on Starch and Starch Synthesis Enzymes of Yangmai 16 Under Fully Open-Air Field Conditions
ZHANG Ru-biao, HU Hai-juan, ZHAO Zheng, YANG Dan-dan, ZHU Xin-kai, GUO Wen-shan
2013, 12 (12): 2157-2163.   DOI: 10.1016/S2095-3119(13)60345-7
Abstract1237)      PDF in ScienceDirect      
O3 is not only greenhouse gas but also a primary gaseous contaminant in the atmosphere. It has long-lasting effects on crop growth, yield and quality, and brings a series of ecological and environmental problems. A free-air controlled enrichment (FACE) system was applied to study the effect of elevated ozone concentration on activities of key enzymes of starch synthesis of Yangmai 16 in 2009-2010. The main-plot treatment had two levels of O3: ambient level (A-O3) and 50% higher than ambient level (E-O3). The main results were that accumulation rate of amylose, amylopectin and starch were represented in a single peak curve, and their content and accumulation amount rose gradually. The O3 elevation decreased the accumulation rate of amylose, amylopectin and starch amylase, reduced the accumulation amount of amylopectin and starch, and decreased the content of amylopectin and starch, but increased the content of amylose. With the increase of O3 concentration, the enzyme activity of grain granule-bound starch synthase (GBSS), soluble starch synthase (SSS) and starch branching enzyme (SBE) decreased after anthesis. The activities of GBSS and SSS had highly significant correlations with amylose, amylopectin and starch accumulation rate, and the activity of SBE had significant correlations with these items. So the O3 elevation decreased the activity of key enzymes of starch synthesis, which led to the variation of starch synthesis. Key words:
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