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Detection of maize tassels for UAV remote sensing image with an improved YOLOX Model
SONG Chao-yu, ZHANG Fan, LI Jian-sheng, XIE Jin-yi, YANG Chen, ZHOU Hang, ZHANG Jun-xiong
2023, 22 (6): 1671-1683.   DOI: 10.1016/j.jia.2022.09.021
Abstract361)      PDF in ScienceDirect      

Maize tassel detection is essential for future agronomic management in maize planting and breeding, with application in yield estimation, growth monitoring, intelligent picking, and disease detection.  However, detecting maize tassels in the field poses prominent challenges as they are often obscured by widespread occlusions and differ in size and morphological color at different growth stages.  This study proposes the SEYOLOX-tiny Model that more accurately and robustly detects maize tassels in the field.  Firstly, the data acquisition method ensures the balance between the image quality and image acquisition efficiency and obtains maize tassel images from different periods to enrich the dataset by unmanned aerial vehicle (UAV).  Moreover, the robust detection network extends YOLOX by embedding an attention mechanism to realize the extraction of critical features and suppressing the noise caused by adverse factors (e.g., occlusions and overlaps), which could be more suitable and robust for operation in complex natural environments.  Experimental results verify the research hypothesis and show a mean average precision (mAP@0.5) of 95.0%.  The mAP@0.5, mAP@0.5–0.95, mAP@0.5–0.95 (area=small), and mAP@0.5–0.95 (area=medium) average values increased by 1.5, 1.8, 5.3, and 1.7%, respectively, compared to the original model.  The proposed method can effectively meet the precision and robustness requirements of the vision system in maize tassel detection.

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Grain yield and nitrogen use efficiency of an ultrashort-duration variety grown under different nitrogen and seeding rates in direct-seeded and double-season rice in Central China
WANG Xin-yu, YANG Guo-dong, XU Le, XIANG Hong-shun, YANG Chen, WANG Fei, PENG Shao-bing
2023, 22 (4): 1009-1020.   DOI: 10.1016/j.jia.2022.08.019
Abstract277)      PDF in ScienceDirect      

Nitrogen (N) and seeding rates are important factors affecting grain yield and N use efficiency (NUE) in direct-seeded rice.  However, these factors have not been adequately investigated on direct-seeded and double-season rice (DDR) in Central China.  The objective of this study was to evaluate the effects of various N and seeding rates on the grain yield and NUE of an ultrashort-duration variety grown under DDR.  Field experiments were conducted in 2018 in Wuxue County and 2019 in Qichun County, Hubei Province, China with four N rates and three seeding rates.  The results showed that the grain yield of the ultrashort-duration variety ranged from 6.32 to 8.23 t ha–1 with a total growth duration of 85 to 97 days across all treatments with N application.  Grain yield was increased significantly by N application in most cases, but seeding rate had an inconsistent effect on grain yield.  Furthermore, the response of grain yield to the N rates was much higher than the response to seeding rates.  The moderate N rates of 100–150 and 70–120 kg N ha–1 in the early and late seasons, respectively, could fully express the yield potential of the ultrashort-duration variety grown under DDR.  Remarkably higher N responses and agronomic NUE levels were achieved in the early-season rice compared with the late-season rice due to the difference in indigenous soil N supply capacity (INS) between the two seasons.  Seasonal differences in INS and N response should be considered when crop management practices are optimized for achieving high grain yield and NUE in ultrashort-duration variety grown under DDR.

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Border effects of the main and ratoon crops in rice ratooning system
ZHENG Chang, WANG Yue-chao, XU Wen-ba, YANG De-sheng, YANG Guo-dong, YANG Chen, HUANG Jian-liang, PENG Shao-bing
2023, 22 (1): 80-91.   DOI: 10.1016/j.jia.2022.08.048
Abstract537)      PDF in ScienceDirect      

The border effect (BE) is widely observed in crop field experiments, and it has been extensively studied in many crops.  However, only limited attention has been paid to the BE of ratoon rice.  We conducted field experiments on ratoon rice in Qichun County, Hubei Province, Central China in 2018 and 2019 to compare the BE in the main and ratoon crops, and to quantify the contribution of BE in the main crop to that in the ratoon crop.  The BE of two hybrid varieties was measured for the outermost, second outermost, and third outermost rows in each plot of both crops.  To determine the contribution of BE between the two crops, portions of hills in the outermost and second outermost rows were uprooted during the harvest of the main crop so that the second and third outermost rows then became the outermost rows in the ratoon crop.  Overall, the BE on grain yield was greater in the main crop than in the ratoon crop.  In the main crop, the BE on grain yield was 98.3% in the outermost row, which was explained by the BE on panicles m–2, spikelets/panicle, spikelets m–2, and total dry weight.  In the ratoon crop, the BE on grain yield was reduced to 60.9 and 27.6% with and without the contribution of the BE in the main crop, respectively.  Consequently, 55.1% of the BE on grain yield in the ratoon crop was contributed from the main crop.  High stubble dry weight and non-structural carbohydrate (NSC) accumulation at the harvest of the main crop were responsible for the contribution of BE in the main crop to that in the ratoon crop.  Our results suggest that increases in stubble dry weight and NSC accumulation at the harvest of the main crop could be important strategies for developing high-yielding cropping practices in the rice ratooning system.

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Allele mining of wheat ABA receptor at TaPYL4 suggests neo-functionalization among the wheat homoeologs
WU Bang-bang, SHI Meng-meng, Mohammad POURKHEIRANDISH, ZHAO Qi, WANG Ying, YANG Chen-kang, QIAO Ling, ZHAO Jia-jia, YAN Su-xian, ZHENG Xing-wei, ZHENG Jun
2022, 21 (8): 2183-2196.   DOI: 10.1016/S2095-3119(21)63699-7
Abstract213)      PDF in ScienceDirect      
ABA receptors (PYR/PYL/RCAR) play a central role in the water loss control of plants.  A previous report indicated that TaPYL4 is a critical gene in wheat that improves grain production under drought conditions and increases water use efficiency.  In this study, we analyzed the sequence polymorphisms and genetic effects of TaPYL4s.  Based on isolated TaPYL4 genes from chromosomes 2A, 2B and 2D, three haplotypes were detected in the promoter region of TaPYL4-2A, and two haplotypes were present in TaPYL4-2B and TaPYL4-2D, respectively.  Marker/trait association analysis indicated that TaPYL4-2A was significantly associated with plant height in 262 Chinese wheat core collection accessions, as well as the drought tolerance coefficient (DTC) for plant height in 239 wheat varieties from Shanxi Province in multiple environments.  However, the frequencies of favored drought-tolerant haplotype TaPYL4-2A-Hap2 were considerably low, accounting for only 10%, and lines with this certain Hap could be reserved in the breeding program.  TaPYL4-2B was significantly associated with grain number, and the favored haplotype TaPYL4-2B-Hap1 was the dominant allele of above 90% in the collection.  For TaPYL4-2D, there were no significant differences in these traits between the two haplotypes in either of the two panels.  These results indicate that variation might lead to functional differentiation among the homoeologs and the haplotypes had undergone artificial selection during breeding.  Two molecular markers developed to distinguish these haplotypes could be used for breeding in water-limited regions.

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PbPH5, an H+ P-ATPase on the tonoplast, is related to malic acid accumulation in pear fruit
SONG Jun-xing, CHEN Ying-can, LU Zhao-hui, ZHAO Guang-ping, WANG Xiao-li, ZHAI Rui, WANG Zhi-gang, YANG Cheng-quan, XU Ling-fei
2022, 21 (6): 1645-1657.   DOI: 10.1016/S2095-3119(21)63790-5
Abstract203)      PDF in ScienceDirect      

Organic acids are one of the most important factors influencing fruit flavors. The predominant organic acid in most pear cultivars is malic acid, but the mechanism controlling its accumulation remains unclear. In this study, by comparing gene expression levels and organic acid content, we revealed that the expression of PbPH5, which encodes a P3A-ATPase, is highly correlated with malic acid accumulation in different pear species, with correlation coefficients of 0.932**, 0.656*, 0.900**, and 0.518* (*, P<0.05 or **, P<0.01) in Pyrus bretschneideri Rehd., P. communis Linn., P. pyrifolia Nakai., and P. ussuriensis Maxim., respectively. Moreover, the overexpression of PbPH5 in pear significantly increased the malic acid content. In contrast, silencing PbPH5 via RNA interference significantly decreased its transcript level and the pear fruit malic acid content. A subcellular localization analysis indicated that PbPH5 is located in the tonoplast. Additionally, a phylogenetic analysis proved that PbPH5 is a PH5 homolog gene that is clustered with Petunia hybrida, Malus domestica, and Citrus reticulata genes. Considered together, these findings suggest PbPH5 is a functionally conserved gene. Furthermore, the accumulation of malic acid in pear fruits is at least partly related to the changes in PbPH5 transcription levels.

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Flumetralin and dimethyl piperidinium chloride alter light distribution in cotton canopies by optimizing the spatial configuration of leaves and bolls
LIANG Fu-bin, YANG Cheng-xun, SUI Long-long, XU Shou-zhen, YAO He-sheng, ZHANG Wang-feng
2020, 19 (7): 1777-1788.   DOI: 10.1016/S2095-3119(19)62792-9
Abstract140)      PDF in ScienceDirect      
Plant growth regulators (PGRs) are frequently used to adjust cotton growth and development.  The objectives of this study were to determine how PGRs affect plant morphology, light distribution and the spatial distribution of leaves and bolls within the cotton canopy.  The field experiments were carried out at Shihezi (Xinjiang Uyghur Autonomous Region, China) in 2014 and 2015.  The experiment included two PGR treatments: (i) flumetralin (active ingredient (a.i.), N-N-ethyl-2,6-dinitro-4-aniline) and (ii) mepiquat chloride (a.i., 1-dimethyl-piperidiniuchloride) plus flumetralin.  No PGR (manual topping) was applied in the control treatment.  The chemically-topped plants were taller and had more main stem internodes than the manually-topped plants.  Furthermore, the PGRs significantly reduced the length of fruiting branches in the upper canopy, resulting in a more compact canopy.  The maximum leaf area index was significantly greater in the chemically-topped treatments than that in the control.  In particular, the PGRs increased leaf area index by 25% in the upper canopy.  The leaf area duration was also longer in the chemically-topped treatments than in the control.  Compared with the control, the chemically-topped treatments increased canopy diffuse non-interceptance by 35.75% in the upper canopy layer, while reducing the fraction of intercepted photosynthetically active radiation by 14.45% in the upper canopy layer.  Light transmittance in the upper and middle canopy layers was greater in the chemically-topped treatments than in the control, which increased boll numbers in both the upper canopy and the middle canopy.  However, the chemically-topped treatments resulted in less light-leakage through the lower canopy layer during the late growth stages, which had a tendency to increase boll numbers in the whole canopy.  In summary, the PGRs optimized canopy shape, light distribution and the spatial distribution of bolls and leaves.
 
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The diversity and potential function of endophytic bacteria isolated from Kobreasia capillifolia at alpine grasslands on the Tibetan Plateau, China
WANG Ying, YANG Cheng-de, YAO Yu-ling, WANG Yu-qin, ZHANG Zhen-fen, XUE Li
2016, 15 (9): 2153-2162.   DOI: 10.1016/S2095-3119(15)61248-5
Abstract1448)      PDF in ScienceDirect      
A total of 50 endophytic bacterial isolates were obtained from Kobreasia capillifolia at alpine grasslands in the Eastern Qilian Mountains on the Tibetan Plateau in China.  Based on the sequencing and phylogenetic analysis of 16S rDNA genes, all isolates phylogenetically related closely to Bacillus, Acinetobacter, Stenotrophomonas, Brevundimonas, Arthrobacter, Curtobacterium, Paenibacillus, Plantibacter, Promicromonospora, Serratia, and Microbacterium, among which Bacillus was the predominant genus (47.8% of the total number of endophytic isolates).  These isolates possessed different biological functions.  In 50 endophytic bacteria, 42 isolates produced indole acetic acid (IAA) on King medium.  There were seven isolates showing potency of mineral phosphate solubilization in Pikovaskaia’s (PKO) liquid medium.  Seven isolates exhibited antagonistic effect against Fusarium avenaceum, Colletotrichum coccodes and Phoma foveata.  This was the first report on diversity and plant growth promotion of endophytic bacteria from K. capillifolia on alpine grassland in the Eastern Qilian Mountains, Chain.  It is essential for revealing the relationship among plant, microorganism, and the special environment because the potential function of endophytic bacteria made a contribution to the interactions of plants and endophytic bacteria.
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Accumulation of beneficial haplotypes in Huang-Huai-Hai wheat region and its application in molecular breeding
Chengzhi Jiao, Mingxing Wen, Xin Jing, Vanika Garg, Chuanqing Zhou, Liyang Chen, Fengfeng Xu, Chenyang Hao, Jin Xiao, Haiyan Wang, Rajeev K. Varshney, Xueyong Zhang, Xiue Wang
DOI: 10.1016/j.jia.2024.12.003 Online: 05 December 2024
Abstract32)      PDF in ScienceDirect      

The Huang-Huai-Hai wheat region (HHHR) is characterized by the largest cultivation area and yield among all the major wheat-producing regions in China.  Over the past 70 years, significant advances in wheat breeding have been achieved in this region, resulting in high and stable yields as well as improved disease resistance.  However, there is a notable deficiency in the systematic molecular-level analyses of wheat breeding advantages in HHHR.  To bridge this gap, we used a Wheat 55K SNP array to evaluate 384 accessions from a core collection of wheat germplasms across China to systematically analyze the distribution patterns of beneficial haplotypes associated with traits related to yield and powdery mildew resistance specific to HHHR.  Our findings indicate that varieties from HHHR demonstrate significantly superior performance in terms of yield-related traits and powdery mildew resistance compared to those from other wheat regions.  Using genome-wide association studies (GWAS) analysis, we identified the QTNs associated with both grain yield and powdery mildew resistance.  Importantly, beneficial haplotypes were found at significantly higher frequencies in the HHHR than in other wheat-growing regions.  Based on these haplotypes, the MFP-a gene was identified as potentially regulating jasmonic acid synthesis while also playing a role in grain development and conferring powdery mildew resistance.  Furthermore, identity by descent (IBD) analysis revealed specific conserved genomic segments that have become fixed through selective breeding practices in HHHR, which may serve as invaluable resources for the targeted enhancement of yield and disease resistance traits in other wheat-growing areas.  Finally, using the Aimengniu breeding lineage as a case study, we elucidated the genetic basis underlying the key founder parental formations utilized in breeding programs.  This study not only provides essential references and guidance for future molecular breeding initiatives in China but also has implications for enhancing wheat production worldwide.

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Biochar application enhances soil quality by improving soil physical structure under particular water and salt conditions in arid region of Northwest China
Yang Chen, Xuyu Feng, Xiao Zhao, Xinmei Hao, Ling Tong, Sufen Wang, Risheng Ding, Shaozhong Kang
DOI: 10.1016/j.jia.2024.12.014 Online: 13 December 2024
Abstract5)      PDF in ScienceDirect      

Exploring the suitability of biochar for improving soil quality under different water and salt conditions is important for maintaining soil health and productivity in the arid regions of Northwestern China. We compared the effects of biochar application practices on soil physical, chemical and biological properties under different irrigation and water salinitlevels in a two-year field experiment in a mulched and drip-irrigated maize field in Gansu province, China. Eight treatments in total included the combination of two biochar addition rates of 0 t ha-1 (B0) and 60 t ha-1 (B1), two irrigation levels of full (W1) and deficit irrigation (W2; W2=1/2 W1) and two water salinity levels of fresh water (S0, 0.71 g L-1) and brackish water (S1, 4.00 g L-1). The minimum dataset method was used to calculate the soil quality index (SQI) under different treatments. Deficit and brackish water irrigation significantly reduced SQI by 3.80-9.80% through reducing some soil physical, chemical and biological properties. Biochar application significantly increased the SQI by 6.13 and 10.40% under full irrigation with fresh and brackish water, respectively. Biochar addition enhanced the relative abundance of beneficial bacteria (e.g., Proteobacteria, Patescibacteria) in the soil in all water-salt treatments. The partial least squares path model showed that biochar application significantly enhanced the SQI mainly by improving soil aggregation and pore structure under particular water-salt conditions. This research provides an important basis for utilizing biochar to improve soil quality in arid regions of Northwest China under various water-salt conditions.

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