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Asset specificity and farmers’ intergenerational succession willingness of apple management
ZHANG Qiang-qiang, GAO Xi-xi, Nazir Muhammad ABDULLAHI, WANG Yue, HUO Xue-xi
2023, 22 (8): 2553-2566.   DOI: 10.1016/j.jia.2023.04.016
Abstract153)      PDF in ScienceDirect      
Understanding the factors behind apple farmers’ willingness to pass on the management of their farms to their descendants is crucial to the continuity of apple production. Due to the high specificity of the human capital, physical assets, land assets, and geographical location in apple production, this study used a binary logistic regression and a mediating effect model to explore the impact of asset specificity on farmers’ intergenerational succession willingness of apple management (FISWAM) and to examine the mediating effects of loss aversion in the impact of asset specificity on the FISWAM. The results showed that about 18.68% of the respondents expressed willingness to transfer their apple business between generations, and the FISWAM was generally weak. In addition to the negative impact of geographical location specificity (GLS), human capital specificity (HCS), physical assets specificity (PAS), and land assets specificity (LAS) can enhance the FISWAM. Loss aversion plays a partial mediating role in the impact of PAS, LAS, and GLS on the FISWAM
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Development and application of KASP marker for high throughput detection of the seedless trait in grapevine
WANG Fu-qiang, BIAN Lu, QIU Peng-peng, GUO Shuo, GUO Jing-han, GUO Chen-shuo, JIANG Jian-fu, LIU Chong-huai, WANG Yong, LIU Guo-tian, WANG Yue-jin, XU Yan
2023, 22 (11): 3269-3283.   DOI: 10.1016/j.jia.2023.10.014
Abstract207)      PDF in ScienceDirect      

Molecular marker-assisted selection (MAS) can significantly accelerate and improve the efficiency of the breeding process in seedless grape cultivars.  In this study, we developed the KASP_VviAGL11 and VviAGL11_410 markers based on a single nucleotide polymorphism (SNP) site (Chr18: 26889437 (A/C)) of the VviAGL11 gene, and compared them with previously reported SSR markers p3_VvAGL11 and 5U_VviAGL11 by testing 101 cultivars and 81 F1 hybrid progenies.  The results showed that both of the proposed markers obtained 100% accuracy rates in detecting allele A, which was closely associated with the seedless trait in grapes, while p3_VvAGL11 and 5U_VviAGL11 had lower accuracy rates due to their tendency to produce false positives.  After careful evaluation of the technical advantages and disadvantages associated with these markers, we concluded that KASP_VviAGL11 was superior in terms of simplicity, cost-effectiveness, efficiency, and accuracy.  Thus, we optimized the process of molecular MAS for seedless grapes, focusing on the KASP_VviAGL11 marker as a central component, to provide key technical support for the development of new seedless grape cultivars.

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The collagen type I alpha 1 chain gene is an alternative safe harbor locus in the porcine genome
XIANG Guang-ming, ZHANG Xiu-ling, XU Chang-jiang, FAN Zi-yao, XU Kui, WANG Nan, WANG Yue, CHE Jing-jing, XU Song-song, MU Yu-lian, LI Kui, LIU Zhi-guo
2023, 22 (1): 202-213.   DOI: 10.1016/j.jia.2022.08.105
Abstract283)      PDF in ScienceDirect      

Efficient and stable expression of foreign genes in cells and transgenic animals is important for gain-of-function studies and the establishment of bioreactors.  Safe harbor loci in the animal genome enable consistent overexpression of foreign genes, without side effects.  However, relatively few safe harbor loci are available in pigs, a fact which has impeded the development of multi-transgenic pig research.  We report a strategy for efficient transgene knock-in in the endogenous collagen type I alpha 1 chain (COL1A1) gene using the clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9) system.  After the knock-in of a 2A peptide-green fluorescence protein (2A-GFP) transgene in the last codon of COL1A1 in multiple porcine cells, including porcine kidney epithelial (PK15), porcine embryonic fibroblast (PEF) and porcine intestinal epithelial (IPI-2I) cells, quantitative PCR (qPCR), Western blotting, RNA-seq and CCK8 assay were performed to assess the safety of COL1A1 locus.  The qPCR results showed that the GFP knock-in had no effect (P=0.29, P=0.66 and P=0.20 for PK15, PEF and IPI-2I cells, respectively) on the mRNA expression of COL1A1 gene.  Similarly, no significant differences (P=0.64, P=0.48 and P=0.80 for PK15, PEF and IPI-2I cells, respectively) were found between the GFP knock-in and wild type cells by Western blotting.  RNA-seq results revealed that the transcriptome of GFP knock-in PEF cells had a significant positive correlation (P<2.2e–16) with that of the wild type cells, indicating that the GFP knock-in did not alter the global expression of endogenous genes.  Furthermore, the CCK8 assay showed that the GFP knock-in events had no adverse effects (P24h=0.31, P48h=0.96, P72h=0.24, P96h=0.17, and P120h=0.38) on cell proliferation of PK15 cells.  These results indicate that the COL1A1 locus can be used as a safe harbor for foreign genes knock-in into the pig genome and can be broadly applied to farm animal breeding and biomedical model establishment

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Border effects of the main and ratoon crops in rice ratooning system
ZHENG Chang, WANG Yue-chao, XU Wen-ba, YANG De-sheng, YANG Guo-dong, YANG Chen, HUANG Jian-liang, PENG Shao-bing
2023, 22 (1): 80-91.   DOI: 10.1016/j.jia.2022.08.048
Abstract537)      PDF in ScienceDirect      

The border effect (BE) is widely observed in crop field experiments, and it has been extensively studied in many crops.  However, only limited attention has been paid to the BE of ratoon rice.  We conducted field experiments on ratoon rice in Qichun County, Hubei Province, Central China in 2018 and 2019 to compare the BE in the main and ratoon crops, and to quantify the contribution of BE in the main crop to that in the ratoon crop.  The BE of two hybrid varieties was measured for the outermost, second outermost, and third outermost rows in each plot of both crops.  To determine the contribution of BE between the two crops, portions of hills in the outermost and second outermost rows were uprooted during the harvest of the main crop so that the second and third outermost rows then became the outermost rows in the ratoon crop.  Overall, the BE on grain yield was greater in the main crop than in the ratoon crop.  In the main crop, the BE on grain yield was 98.3% in the outermost row, which was explained by the BE on panicles m–2, spikelets/panicle, spikelets m–2, and total dry weight.  In the ratoon crop, the BE on grain yield was reduced to 60.9 and 27.6% with and without the contribution of the BE in the main crop, respectively.  Consequently, 55.1% of the BE on grain yield in the ratoon crop was contributed from the main crop.  High stubble dry weight and non-structural carbohydrate (NSC) accumulation at the harvest of the main crop were responsible for the contribution of BE in the main crop to that in the ratoon crop.  Our results suggest that increases in stubble dry weight and NSC accumulation at the harvest of the main crop could be important strategies for developing high-yielding cropping practices in the rice ratooning system.

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Transcriptional profiling between yellow- and black-seeded Brassica napus reveals molecular modulations on flavonoid and fatty acid content
RONG Hao, YANG Wen-jing, XIE Tao, WANG Yue, WANG Xia-qin, JIANG Jin-jin, WANG You-ping
2022, 21 (8): 2211-2226.   DOI: 10.1016/S2095-3119(21)63656-0
Abstract225)      PDF in ScienceDirect      

Brassica napus is an important cash crop broadly grown for the vegetable and oil values.  Yellow-seeded Bnapus is preferred by breeders due to its improved oil and protein quality, less pigments and lignin compared with the black-seeded counterpart.  This study compared the differences in flavonoid and fatty acid contents between yellow rapeseed from the progenies of BnapusSinapis alba somatic hybrids and the black-seeded counterpart using RNA-seq analysis.  Through HPLC-PDA-ESI(−)/MS2 analysis, it was found that phenylpropanoids and flavonoids (i.e., isorhamnetin, epicatechin, kaempferol, and other derivatives) in yellow seed were significantly lower than those in black seed.  The fatty acid (FA) content in yellow rapeseed was higher than that in black rapeseed due to the variation of C16:0, C18:0, C18:1, C18:2, and C18:3 contents.  RNA-seq analysis of seeds at four and five weeks after flowering (WAF) indicated that differentially expressed genes (DEGs) between black and yellow rapeseeds were enriched in flavonoid and FA biosynthesis, including BnTT3, BnTT4, BnTT18, and BnFAD2.  Also, genes related to FA biosynthesis, desaturation and elongation (FAD3, LEC1, FUS3, and LPAT2) in yellow seed were up-regulated compared to those in black seed, while genes involved in beta-oxidation cycle (AIM1 and KAT2) of yellow seed were down-regulated compared to those in black seed.  The DEGs related to the variation of flavonoids, phenylpropanoids, and FAs would help improve the knowledge of yellow seed character in Bnapus and promote rapeseed improvement.

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Effects of exogenous paclobutrazol and sampling time on the efficiency of in vitro embryo rescue in the breeding of new seedless grape varieties
XU Teng-fei, GUO Yu-rui, YUAN Xiao-jian, CHU Yan-nan, WANG Xiao-wei, HAN Yu-lei, WANG Wen-yuan, WANG Yue-jin, SONG Rui, FANG Yu-lin, WANG Lu-jun, XU Yan
2022, 21 (6): 1633-1644.   DOI: 10.1016/S2095-3119(21)63815-7
Abstract347)      PDF in ScienceDirect      

Embryo rescue technology plays an important role in seedless grape breeding.  However, the efficiency of embryo rescue, including the embryo formation, germination, and seedling rates, is closely related to the parental genotypes, degree of abortion, growth medium, and plant growth regulators.  In this study, we investigated the effects of different concentrations of paclobutrazol (PAC), a plant growth regulator, and embryo collection times on the embryo formation, germination, and seedling rates for different hybrid combinations of grape breeding varieties used for their aroma and cold-resistance traits.  The results showed that the different PAC concentrations had varying impacts on the development of ovules and embryos from the different grape varieties.  The embryo formation rates of the ‘Sultanina Rose’בBeibinghong’ and ‘Kunxiang Seedless’בTaishan-2’ crosses were the highest under the 5.1 μmol L–1 PAC treatment.  The 1.0 μmol L–1 PAC treatment was optimal for the germination and seedling development of the ‘Sultanina Rose’בBeibinghong’ embryos, whereas the 0.2 μmol L–1 PAC treatment induced the highest germination rate for the ‘Sultanina Rose’בKunxiang Seedless’ cross.  The optimal sampling times for each cross varied as 39 d after pollination (DAP) for the ‘Flame Seedless’בMuscat Hamburg’ cross, 46 DAP for the ‘Kunxiang Seedless’בBeibinghong’ cross, and 41 DAP for the ‘Ruby Seedless’בBeibinghong’ and ‘Fantasy Seedless’בShuangyou’ crosses.  Moreover, the medium modified with 0.5 g L–1 of indole-3-butyric acid allowed the malformed seedlings to develop into plantlets and achieve larger progenies.  This study provides a useful basis for further studies into grape embryo rescue and could improve breeding efforts for new seedless grape varieties.

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Effects of nitrogen management on the ratoon crop yield and head rice yield in South USA
WANG Yue-chao, LI Xiu-fen, Lee Tarpley, PENG Shao-bing, DOU Fu-gen
2021, 20 (6): 1457-1464.   DOI: 10.1016/S2095-3119(20)63452-9
Abstract113)      PDF in ScienceDirect      
Ratoon rice cropping is an important component of the rice cropping system in Texas and south Louisiana, USA, and expanding in Asian countries.  Two field studies were conducted with widely planted rice (Oryza sativa L.) cultivars at Eagle Lake, Texas, USA to determine the effects of nitrogen (N) management in main (first) crop (MC) and ratoon (second) crop (RC) on RC yield.  In 2012 and 2013, one cultivar (Presidio) was adopted to determine the effects of RC N management on ratoon yield and head rice yield.  In 2016 and 2017, CL153, CL163 and CL272 in addition to Presidio were adopted to examine the effect of MC N management on ratoon yield and head rice yield.  N applied at preflood after MC harvest considerably improved RC yield.  Application of 99 kg N ha–1 at preflood after MC harvest was practically adequate for RC regrowth, development and approaching the yield potential for Presidio.  RC could produce quite high average grain yields of 5.90 to 6.53 t ha–1 in 2012 and 2013, respectively.  Main crop N rate only significantly affected MC yield; however, given N applied of 99 kg ha–1 at preflood after MC harvest, ratoon yield was not significantly affected by MC N rate.  Neither the main nor ratoon crop N management had a significant effect on RC head rice yield.  Considerable RC head rice yields (55–65%) were observed in all of the four cultivars and 4 years except for CL272 in 2016.  These results indicat that without very high N fertilizer application, rice ratoon crop could produce a considerable grain yield and an expectative head rice yield.  Rice ratooning could be a practical way to increase rice yields with the minimal input in south Texas and regions with a similar climate.
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Silencing the SLB3 transcription factor gene decreases drought stress tolerance in tomato
WANG Zi-yu, bAO Yu-fang, PEI Tong, WU Tai-ru, DU Xu, HE Meng-xi, WANG Yue, LIU Qi-feng, YANG Huan-huan, JIANG Jing-bin, ZHANG He, LI Jing-fu, ZHAO Ting-ting, XU Xiang-yang
2020, 19 (11): 2699-2708.   DOI: 10.1016/S2095-3119(20)63350-0
Abstract128)      PDF in ScienceDirect      
BRI1-EMS-SUPPRESSOR 1 (BES1) transcription factor is closely associated with the brassinosteroid (BR) signaling pathway and plays an important role in plant growth and development.  SLB3 is a member of BES1 transcription factor family and its expression was previously shown to increase significantly in tomato seedlings under drought stress.  In the present study,we used virus-induced gene silencing (VIGS) technology to downregulate SLB3 expression to reveal the function of the SLB3 gene under drought stress further.  The downregulated expression of SLB3 weakened the drought tolerance of the plants appeared earlier wilting and higher accumulation of H2O2 and O2·, decreased superoxide dismutase (SOD) activity, and increased proline (PRO) and malondialdehyde (MDA) contents and peroxidase (POD) activity.  Quantitative real-time PCR (qRT-PCR) analysis of BR-related genes revealed that the expression of SlCPD, SlDWARF and BIN2-related genes was significantly upregulated in SLB3-silenced seedlings under drought stress, but that the expression of TCH4-related genes was downregulated.  These results showed that silencing the SLB3 gene reduced the drought resistance of tomato plants and had an impact on the BR signaling transduction which may be probably responsible for the variation in drought resistance of the tomato plants. 
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Integrated management strategy for improving the grain yield and nitrogen-use efficiency of winter wheat
XU Hai-cheng, DAI Xing-long, CHU Jin-peng, WANG Yue-chao, YIN Li-jun, MA Xin, DONG Shu-xin, HE Ming-rong
2018, 17 (2): 315-327.   DOI: 10.1016/S2095-3119(17)61805-7
Abstract791)      PDF in ScienceDirect      
Understanding of how combinations of agronomic options can be used to improve the grain yield and nitrogen use efficiency (NUE) of winter wheat is limited.  A three-year experiment involving four integrated management strategies was conducted from 2013 to 2015 in Tai’an, Shandong Province, China, to evaluate changes in grain yield and NUE.  The integrated management treatments were as follows: current practice (T1); improvement of current practice (T2); high-yield management (T3), which aimed to maximize grain yield regardless of the cost of resource inputs; and integrated soil and crop system management (T4) with a higher seeding rate, delayed sowing date, and optimized nutrient management.  Seeding rates increased by 75 seeds m–2 with each treatment from T1 (225 seeds m–2) to T4 (450 seeds m–2).  The sowing dates were delayed from T1 (5th Oct.) to T2 and T3 (8th Oct.), and to T4 treatment (12th Oct.).  T1, T2, T3, and T4 received 315, 210, 315, and 240 kg N ha–1, 120, 90, 210 and 120 kg P2O5 ha–1, 30, 75, 90, and 45 kg K2O ha–1, respectively.  The ratio of basal application to topdressing for T1, T2, T3, and T4 was 6:4, 5:5, 4:6, and 4:6, respectively, with the N topdressing applied at regreening for T1 and at jointing stage for T2, T3, and T4.  The P fertilizers in all treatments were applied as basal fertilizer.  The K fertilizer for T1 and T2 was applied as basal fertilizer while the ratio of basal application to topdressing (at jointing stage) of K fertilizer for both T3 and T4 was 6:4.  T1, T2, T3, and T4 were irrigated five, four, four and three times, respectively.  Treatment T3 produced the highest grain yield among all treatments over three years and the average yield was 9 277.96 kg ha–1.  Grain yield averaged across three years with the T4 treatment (8 892.93 kg ha–1) was 95.85% of that with T3 and was 21.72 and 6.10% higher than that with T1 (7 305.95 kg ha–1) and T2 (8 381.41 kg ha–1), respectively.  Treatment T2 produced the highest NUE of all the integrated treatments.  The NUE with T4 was 95.36% of that with T2 and was 51.91 and 25.62% higher than that with T1 and T3, respectively.  The N uptake efficiency (UPE) averaged across three years with T4 was 50.75 and 16.62% higher than that with T1 and T3, respectively.  The N utilization efficiency (UTE) averaged across three years with T4 was 7.74% higher than that with T3.  The increased UPE with T4 compared with T3 could be attributed mostly to the lower available N in T4, while the increased UTE with T4 was mainly due to the highest N harvest index and low grain N concentration, which consequently led to improved NUE.  The net profit for T4 was the highest among four treatments and was 174.94, 22.27, and 28.10% higher than that for T1, T2, and T3, respectively.  Therefore, the T4 treatment should be a recommendable management strategy to obtain high grain yield, high NUE, and high economic benefits in the target region, although further improvements of NUE are required.
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Gene cloning and expression analyses of WBC genes in the developing grapevine seeds
TANG Yu-jin, WANG Qian, XUE Jing-yi, LI Yan, LI Rui-min, Steve Van Nocker, WANG Yue-jin, ZHANG Chao-hong
2018, 17 (06): 1348-1359.   DOI: 10.1016/S2095-3119(17)61827-6
Abstract445)      PDF in ScienceDirect      
White-brown complex (WBC) transporters, also called half-size ATP binding cassette G (ABCG) transporters, are involved in many biological processes, including seed development; however, the WBC transporters in grapevines received less attention to date.  To reveal the molecular characteristics of WBCs and the connection between WBCs and agronomic traits of stenospermocarpic (seedless) grapevine, we carried out a genomic census and analysis of ovule-associated expression for VvWBC genes in grapevine.  We identified 30 VvWBC genes and cloned full-length complementary DNAs (cDNAs) for 20 of these.  The tissue or organ-specific expression analysis showed that several VvWBCs exhibited distinct expression patterns with some showing tissue specificity.  Twelve VvWBC genes were found to be expressed in the developing ovules.  Moreover, the results of quantitative real-time PCR (qRT-PCR) suggested that four of twelve ovule-expressed VvWBCs have distinct expression profiles during the development of ovules between seeded and stenospermocarpic grapevines.  These four genes might be involved in ovule abortion.  Meanwhile, chromosome mapping, multiple sequence alignments, exon/intron structure analyses and synteny analyses were preformed on VvWBC genes.  Our experiments provide a new perspective on the mechanism of stenospermocarpic seedlessness and put forward a framework for further study of WBC transporters.
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Water and Energy Consumption by Agriculture in the Minqin Oasis Region
LI Cheng, WANG Yue , QIU Guo-yu
2013, 12 (8): 1330-1340.   DOI: 10.1016/S2095-3119(13)60542-0
Abstract1702)      PDF in ScienceDirect      
Water used in agriculture consumes much energy, mainly due to pumping water for irrigation, but the water-energy nexus is always neglected in arid and semi-arid areas. Based on hydrological observation data, irrigation data and socioeconomic data over the past 50 yr, this study has derived a detailed estimate of greenhouse gas (GHG) emissions from agricultural water use in the Minqin Oasis. Results show that the decreasing water supply and increasing demand for agriculture has caused severe water deficits over the past 50 yr in this region. The groundwater energy use rate rose by 76% between 1961 and 2009 because of the serious decline in groundwater levels. An increase in pump lift by an average 1 m would cause GHG emission rates to rise by around 2%. Over the past 10 yr, the GHG emissions from groundwater accounted for 65-88% of the total emissions from agricultural water. GHG emissions for diverted water varied from 0.047 to 0.074 Mt CO2e as the water input increased. Long distance conveyance and high pump lifts need more electricity input than groundwater abstraction does. Government policies have had a favorable effect on total emissions by reducing water abstraction. But groundwater depletion, exacerbated by a growing population and an expansion in arable land, remains the principal energy-water nexus challenge in the region. In response to the increasing water-energy crisis, energy-saving irrigation technology, matching to cost efficiencies, and better coordination between different infrastructural agencies could be feasible ways of rendering the water and energy sectors more sustainable over the long term.
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The Effect ofAdministration of Rutin on Plasma Levels of Estrogen, Prolactin, Growth Hormone and Gene Expression of Their Receptors in Mammary Glands in Ovariectomized Rats
GUO Xu-dong, DIAO Qi-yu, WANG Yue-ying, TU Yan, DENG Kai-dong, WANG Xin-jian, FU Tong, YAN Gui-long
2012, 12 (10): 1700-1706.   DOI: 10.1016/S1671-2927(00)8703
Abstract1633)      PDF in ScienceDirect      
The development of mammary glands, endocrine hormone concentrations and the gene expression of related receptors were measured in ovariectomized virgin rats after adminstration of an estrogen-like plant extract, rutin. Thirty-two ovariectomized virgin Wistar rats were randomly assigned to 4 treatments with 8 animals each: gastric infusion of 2 mL normal saline per unovariectomized rat per day (Sham), gastric infusion of 2 mL normal saline per ovariectomized rat per day (Ova), gastric infusion of 60 mg rutin kg-1 body weight (BW) per ovariectomized rat per day (Ova+Rut), or intramuscular injection of 60 μg estradiol kg-1 BW per ovariectomized rat weekly (Ova+Est). Samples of blood and mammary glands were harvested to determine the levels of estrogen (E2), prolactin (PRL) and growth hormone (GH), and the gene expression of estrogen receptors (ER), prolactin receptors (PRLR) and growth hormone receptors (GHR) with radioimmunoassy (RIA) and RT-PCR technology, respectively. The E2 concentration in plasma and gland tissues from the rats of Ovx+Rut or Ovx+Est was higher than that of Ovx (P<0.05), but the plasma E2 concentration from the rats of Ovx+Rut was lower than that of Sham (P<0.05). The order of the PRL concentration in plasma and gland tissues was Ovx
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