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Identification of tolerance to high density and lodging in short petiolate germplasm M657 and the effect of density on yield-related phenotypes of soybean
GAO Hua-wei, YANG Meng-yuan, YAN Long, HU Xian-zhong, HONG Hui-long, ZHANG Xiang, SUN Ru-jian, WANG Hao-rang, WANG Xiao-bo, LIU Li-ke, ZHANG Shu-zhen, QIU Li-juan
2023, 22 (2): 434-446.   DOI: 10.1016/j.jia.2022.08.047
Abstract257)      PDF in ScienceDirect      

Soybean yield has been increased through high planting density, but investigating plant height and petiole traits to select for compact architecture, lodging resistance, and high yield varieties is an underexplored avenue to improve yield.  We compared the relationship between yield-related traits, lodging resistance, and petiole-associated phenotypes in the short petiole germplasm M657 with three control accessions over 2017-2018 in four locations of the Huang-Huai region.  The results showed M657 exhibited stable and high tolerance to high planting density and resistance to lodging, especially at the highest density (8×105 plants ha-1).  Regression analysis showed that shorter petiole length was significantly associated with increased lodging resistance.  Yield analysis showed that M657 achieved higher yields under higher densities, especially in the north Huang-Huai region.  There are markedly different responses to intra- and inter-row spacing designs among varieties in both lodging and yield related to location and density.  Lodging was positively correlated with planting density, plant height, petiole length, and number of effective branches, and negatively correlated with stem diameter, seed number per plant, and seed weight per plant.  The yield of soybean was increased by appropriately increasing planting density on the basis of current soybean varieties in the Huang-Huai region.  This study provides a valuable new germplasm resource for introgression of compact architecture traits amenable to high yield in high density planting systems and establishes a high-yield model of soybean in the Huang-Huai region.


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Occurrence pattern and morphological polymorphism of weedy rice in China
WANG Hao-quan, DAI Wei-min, ZHANG Zi-xu, LI Meng-shuo, MENG Ling-chao, ZHANG Zheng, LU Huan, SONG Xiao-ling, QIANG Sheng
2023, 22 (1): 149-169.   DOI: 10.1016/j.jia.2022.08.001
Abstract303)      PDF in ScienceDirect      
Rice, the main food crop in China, has been sporadically reported to suffer from weedy rice infestation.  However, the overall occurrence and distribution pattern of Chinese weedy rice remains unclear because a systematic survey has not been conducted.  In order to reveal the infestation of Chinese weedy rice, a field survey was conducted in 999 sampling sites all over the rice-growing regions in China from 2009 to 2016 using seven-scale visual scoring of the level of weed infestation.  Weedy rice was found 39% occurrence incidence in a total of 387 sites.  The sampling sites with 50% or higher overall weedy rice infestation index mainly radiated from Jiangsu, Heilongjiang, Ningxia and Guangdong to the whole East China, Northeast China, Northwest China and South China.  A total of 45 morphological characters from 287 populations (collected simultaneously with the field survey) out of those occurred sites were observed and analyzed using multivariate analysis in common gardens with the same cultivation conditions in 2017 and 2019.  Canonical correlation analysis showed that 45 morphological characters were significantly related to the latitude, mean temperature, minimum temperature, precipitation and mean diurnal range factors.  The 287 weedy rice populations were divided into three morphological groups with climate-dependent geographical differentiation: strong tiller type only in Jiangsu, large leaf type in South China and Central China and large grain type mainly in North China.  Weedy rice seriously infested rice fields and had a geography, climate and cultivated rice type-dependent morphological and biotype differentiation in China.  It is suggested to pay attention to the harmfulness of weedy rice and adopt comprehensive control strategies.
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Transcriptome analysis reveals effects of red and blue lightemitting diodes (LEDs) on the growth, chlorophyll fluorescence and endogenous plant hormones of potato (Solanum tuberosum L.) plantlets cultured in vitro
CHEN Li-li, WANG Hao-ying, GONG Xiao-chen, ZENG Zhao-hai, XUE Xu-zhang, HU Yue-gao
2021, 20 (11): 2914-2931.   DOI: 10.1016/S2095-3119(20)63393-7
Abstract131)      PDF in ScienceDirect      
Red and blue light illumination has been reported to significantly affect plantlet growth.  Potato is an important food and feed crop in the world and potato plantlet cultured in vitro plays an important role in potato production.  However, few studies have documented the effects of red and blue light on the growth of potato plantlets revealed at the transcriptome level.  The objective of this study was to determine the growth and physiological responses of potato plantlets cultured in vitro under monochromatic red (RR), monochromatic blue (BB) as well as combined red and blue (RB) LEDs using the RNA-Seq technique.  In total, 3 150 and 814 differentially expressed genes (DEGs) were detected in potato plantlets under RR and BB, respectively, compared to RB (used as control).  Compared to the control, the DEGs enriched in “photosynthesis” and “photosynthesis-antenna proteins” metabolic pathways were up-regulated and down-regulated by BB and RR, respectively, which might be responsible for the increases and decreases of maximum quantum yield (Fv/Fm), photochemical quantum yield (φPSII), photochemical quenching (qP) and electron transfer rate (ETR) in BB and RR, respectively.  Potato plantlets exhibited dwarfed stems and extended leaves under BB, whereas elongated stems and small leaves were induced under RR.  These dramatically altered plantlet phenotypes were associated with variable levels of endogenous plant hormones gibberellin (GAs), indoleacetic acid (IAA) and cytokinins (CKs), as assessed in stems and leaves of potato plantlets.  In addition, monochromatic red and blue LEDs trigged the opposite expression profiles of DEGs identified in the “plant hormone signal transduction” metabolic pathway, which were closely related to the endogenous plant hormone levels in potato plantlets.  Our results provide insights into the responses of potato plantlets cultured in vitro to red and blue LEDs at the transcriptomic level and may contribute to improvements in the micro-propagation of potato plantlets cultured in vitro from the light spectrum aspect.
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Evaluation of drought tolerance in ZmVPP1-overexpressing transgenic inbred maize lines and their hybrids
JIA Teng-jiao, LI Jing-jing, WANG Li-feng, CAO Yan-yong, MA Juan, WANG Hao, ZHANG Deng-feng, LI Hui-yong
2020, 19 (9): 2177-2187.   DOI: 10.1016/S2095-3119(19)62828-5
Abstract140)      PDF in ScienceDirect      
The vacuolar proton-pumping pyrophosphatase gene (VPP) is often used to enhance plant drought tolerance via genetic engineering.  In this study, the drought tolerance of four transgenic inbred maize lines overexpressing ZmVPP1 (PH4CV-T, PH6WC-T, Chang7-2-T, and Zheng58-T) and their transgenic hybrids was evaluated at various stages.  Under normal and drought conditions, the height and fresh weight were greater for the four transgenic inbred maize lines than for the wild-type (WT) controls at the germination and seedling stages.  Additionally, the transgenic plants exhibited enhanced photosynthetic efficiency at the seedling stage.  In irrigated and non-irrigated fields, the four transgenic lines grew normally, but with increased ear weight and yield compared with the WT plants.  Moreover, the ear weight and yield of the transgenic hybrids resulting from the PH4CV-T×PH6WC-W and Chang7-2-T×Zheng58-W crosses increased in the non-irrigated field.  Our results demonstrated that the growth and drought tolerance of four transgenic inbred maize lines with improved photosynthesis were enhanced by the overexpression of ZmVPP1.  Moreover, the Chang7-2 and PH4CV transgenic lines may be useful for future genetic improvements of maize hybrids to increase drought tolerance.
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Effects of different LEDs light spectrum on the growth, leaf anatomy, and chloroplast ultrastructure of potato plantlets in vitro and minituber production after transplanting in the greenhouse
CHEN Li-li, ZHANG Kai, GONG Xiao-chen, WANG Hao-ying, GAO You-hui, WANG Xi-quan, ZENG Zhao-hai, HU Yue-gao
2020, 19 (1): 108-119.   DOI: 10.1016/S2095-3119(19)62633-X
Abstract162)      PDF in ScienceDirect      
Light spectrum plays an important role in regulating the growth and development of in vitro cultured potato (Solanum tuberosum L.) plantlets.  The status of potato plantlets at the end of in vitro stage influences the minituber production after transplanting.  With 100 μmol m–2 s–1 total photosynthetic photon flux density (PPFD), a light spectrum study of 100% red light emitting diodes (LEDs) light spectrum (RR), 100% blue LEDs light spectrum (BB), 65% red+35% blue LEDs light spectrum (RB), and 45% red+35% blue+20% green LEDs light spectrum (RBG) providing illumination at the in vitro cultured stage of potato plantlets for 4 weeks using fluorescent lamp as control (CK) was performed to investigate the effects of LEDs light spectrum on the growth, leaf anatomy, and chloroplast ultrastructure of potato plantlets in vitro as well as the minituber yield after 2 months transplanting in the greenhouse.  Compared to CK, RB and RBG promoted the growth of potato plantlets in vitro with increased stem diameter, plantlet fresh weight, plantlet dry weight, and health index.  Furthermore, BB induced the greatest stem diameter as well as the highest health index in potato plantlets in vitro.  Root activity, soluble protein, and free amino acid were also significantly enhanced by BB, whereas carbohydrates were improved by RR.  In addition, thickness of leaf, palisade parenchyma and spongy parenchyma was significantly increased by BB and RBG.  Chloroplasts under BB and RBG showed well-developed grana thylakoid and stroma thylakoid.  Unexpectedly, distinct upper epidermis with greatest thickness was induced and palisade parenchyma and spongy parenchyma were arranged neatly in RR.  After transplanting in the greenhouse for 2 months, potato plantlets in vitro from BB, RB, and RBG produced high percentage of large size tuber.  BB improved fresh and dry weights of the biggest tuber but decreased tuber number per plantlet.  In addition, RBG increased tuber number as well as tuber fresh and dry weight slightly.  Our results suggested monochromatic blue LEDs as well as combined red, blue or/and green LEDs light spectrum were superior to fluorescent lamp spectrum in micro-propagation of potato plantlets.  Therefore, the application of RBG was suitable; BB and RB could be used as alternatives.
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Inhibition of KU70 and KU80 by CRISPR interference, not NgAgo interference, increases the efficiency of homologous recombination in pig fetal fibroblasts
LI Guo-ling, QUAN Rong, WANG Hao-qiang, RUAN Xiao-fang, MO Jian-xin, ZHONG Cui-li, YANG Huaqiang, LI Zi-cong, GU Ting, LIU De-wu, WU Zhen-fang, CAI Geng-yuan, ZHANG Xian-wei
2019, 18 (2): 438-448.   DOI: 10.1016/S2095-3119(18)62150-1
Abstract276)      PDF (765KB)(580)      
Non-homologous end-joining (NHEJ) is a predominant pathway for the repair of DNA double-strand breaks (DSB).  It inhibits the efficiency of homologous recombination (HR) by competing for DSB targets.  To improve the efficiency of HR, multiple CRISPR interference (CRISPRi) and Natronobacterium gregoryi Argonaute (NgAgo) interference (NgAgoi) systems have been designed for the knockdown of NHEJ key molecules, KU70, KU80, polynucleotide kinase/phosphatase (PNKP), DNA ligase IV (LIG4), and NHEJ1.  Suppression of KU70 and KU80 by CRISPRi dramatically promoted (P<0.05) the efficiency of HR to 1.85- and 1.58-fold, respectively, whereas knockdown of PNKP, LIG4, and NHEJ1 repair factors did not significantly increase (P>0.05) HR efficiency.  Interestingly, although the NgAgoi system significantly suppressed (P<0.05) KU70, KU80, PNKP, LIG4, and NHEJ1 expression, it did not improve (P>0.05) HR efficiency in primary fetal fibroblasts.  Our result showed that both NgAgo and catalytically inactive Cas9 (dCas9) could interfere with the expression of target genes, but the downstream factors appear to be more active following CRISPR-mediated interference than that of NgAgo. 
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Changes of moisture distribution and migration in fresh ear corn during storage
WANG Hao, LIU Jing-sheng, MIN Wei-hong, ZHENG Ming-zhu, LI Hao
2019, 18 (11): 2644-2651.   DOI: 10.1016/S2095-3119(19)62715-2
Abstract118)      PDF in ScienceDirect      
Understanding of moisture changes in fresh ear corn (Zea mays L.) during storage is imperative for maintaining fresh corn quality.  The changes of moisture distribution and migration in fresh ear corn during storage were investigated using low-field nuclear magnetic resonance (NMR) and magnetic resonance imaging (MRI).  Water loss was greater than water migration in fresh ear corn within the first hour of storage; thereafter, water loss was weaker than water migration.  With the extension of storage time, the signal intensity of MRI in different parts of sliced fresh corn with cob showed a downward trend, and the rate of signal intensity reduction was higher in the peripheral area than at the central part of sliced fresh corn with cob.  The relative proportion of bound water increased with a concomitant drop in that of free water, when the total water content reduced in fresh ear corn under storage.  In conclusion, NMR and MRI are useful and non-destructive tools for real-time monitoring of moisture distribution, migration, and loss in fresh ear corn during storage to assess its quality.  These results can be used for future design of the preserving and processing conditions for fresh ear corn.
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Designing price-contingent vegetable rotation schedules using agent-based simulation
LI Jing, Daniel Rodriguez, WANG Hao-xiang, WU Liu-san
2018, 17 (2): 461-472.   DOI: 10.1016/S2095-3119(17)61741-6
Abstract645)      PDF in ScienceDirect      
Chinese vegetable production cooperatives supply their members, mostly smallholder farmers, with a rotation schedule for the year.  Since vegetable prices are not stable throughout the year, designing a rotation schedule that maximizes expected profits, distributes farmers’ profits more equitably, maintains the diversity of produce in the market, and reduces the risk of pests and diseases, requires adaptive, price-contingent rotation schedules (here, called “self-adaptive adjustment”).  This study uses an agent-based simulation (ABS) to design self-adaptive rotation schedules that deliver these aims.  The self-adaptive adjustment strategy was more profitable for farmers when faced with price volatility, and more equitable as well.  This work provides a decision-support tool for managers of Chinese vegetable production cooperatives to provide farmers with more profitable and equitable rotation schedules.   
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Identification and functional characterization of the MdHB-1 gene promoter sequence from Malus×domestica
WANG Hao-jie, JIANG Yong-hua, QI Ying-wei, DAI Jie-yu, LIU Yan-li, ZHU Xian-bo, LIU Cui-hua, Lü Yan-rong, REN Xiao-lin
2017, 16 (08): 1730-1741.   DOI: 10.1016/S2095-3119(16)61548-4
Abstract767)      PDF in ScienceDirect      
    Homeobox 1 in Malus×domestica (MdHB-1) is a transcription factor that belongs to homeodomain-leucine zipper I (HD-Zip I) protein subfamily. According to previous reports, MdHB-1 could regulate ethylene synthesis by binding with the MdACO1 promoter, but other functions of MdHB-1 are still unknown. To reveal more clues concerning the characters of the MdHB-1 gene promoter and the functions of MdHB-1, the promoter region of MdHB-1 was cloned from the Royal Gala apple genome and recombined with the β-glucuronidase (GUS) gene in this study. This research was conducted in Nicotiana tabacum and supported by Agrobacterium-mediated transient transformation and bioinformatics analysis. Deletion analysis of the MdHB-1 promoter showed that the GUS gene could be activated by serially deleted promoters, and the activity promoted by 680 nucleotides (nt) was the lowest. The region, which is 266 nt upstream of the initiation code (ATG), was effective for GUS expression. Meanwhile, the activity of the MdHB-1 promoter (-1 057 nt), which was stronger than MdHB-1 promoter (-1 057 to -266 nt) and lack the 5´-untranslated region (5´-UTR), showed that 5´-UTR may have a positive effect on gene transcription. After the sequence analysis, the cis-acting elements that respond to hormones and environmental stresses were identified in the promoter region. The MdHB-1 promoter (1 057 nt) activity in Nicotiana tabacum was positively induced by ethrel and darkness, and it was suppressed by gibberellic acid (GA), whereas abscisic acid (ABA), salicylic acid (SA), wounding, and Pseudomonas syringae pv. tomato (DC3000) treatments revealed a slight auxo-action. These results reveal that the MdHB-1 promoter receive internal or external signals, and MdHB-1 may refer to many biological activities in apple, such as its stress response, development, and ripening.
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