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OsDXR interacts with OsMORF1 to regulate chloroplast development and the RNA editing of chloroplast genes in rice
CAO Peng-hui, WANG Di, GAO Su, LIU Xi, QIAO Zhong-ying, XIE Yu-lin, DONG Ming-hui, DU Tan-xiao, ZHANG Xian, ZHANG Rui, JI Jian-hui
2023, 22 (3): 669-678.   DOI: 10.1016/j.jia.2022.08.005
Abstract378)      PDF in ScienceDirect      

Plant chlorophyll biosynthesis and chloroplast development are two complex processes that are regulated by exogenous and endogenous factors.  In this study, we identified OsDXR, a gene encoding a reductoisomerase that positively regulates chlorophyll biosynthesis and chloroplast development in rice.  OsDXR knock-out lines displayed the albino phenotype and could not complete the whole life cycle process.  OsDXR was highly expressed in rice leaves, and subcellular localization indicated that OsDXR is a chloroplast protein.  Many genes involved in chlorophyll biosynthesis and chloroplast development were differentially expressed in the OsDXR knock-out lines compared to the wild type.  Moreover, we found that the RNA editing efficiencies of ndhA-1019 and rpl2-1 were significantly reduced in the OsDXR knock-out lines.  Furthermore, OsDXR interacted with the RNA editing factor OsMORF1 in a yeast two-hybrid screen and bimolecular fluorescence complementation assay.  Finally, disruption of the plastidial 2-C-methyl-derythritol-4-phosphate pathway resulted in defects in chloroplast development and the RNA editing of chloroplast genes.

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Design of a spatial sampling scheme considering the spatial autocorrelation of crop acreage included in the sampling units
WANG Di, ZHOU Qing-bo, YANG Peng, CHEN Zhong-xin
2018, 17 (09): 2096-2106.   DOI: 10.1016/S2095-3119(17)61882-3
Abstract342)      PDF in ScienceDirect      
Information on crop acreage is important for formulating national food polices and economic planning.  Spatial sampling, a combination of traditional sampling methods and remote sensing and geographic information system (GIS) technology, provides an efficient way to estimate crop acreage at the regional scale.  Traditional sampling methods require that the sampling units should be independent of each other, but in practice there is often spatial autocorrelation among crop acreage contained in the sampling units.  In this study, using Dehui County in Jilin Province, China, as the study area, we used a thematic crop map derived from Systeme Probatoire d’Observation de la Terre (SPOT-5) imagery, cultivated land plots and digital elevation model data to explore the spatial autocorrelation characteristics among maize and rice acreage included in sampling units of different sizes, and analyzed the effects of different stratification criteria on the level of spatial autocorrelation of the two crop acreages within the sampling units.  Moran’s I, a global spatial autocorrelation index, was used to evaluate the spatial autocorrelation among the two crop acreages in this study.  The results showed that although the spatial autocorrelation level among maize and rice acreages within the sampling units generally decreased with increasing sampling unit size, there was still a significant spatial autocorrelation among the two crop acreages included in the sampling units (Moran’s I varied from 0.49 to 0.89), irrespective of the sampling unit size.  When the sampling unit size was less than 3 000 m, the stratification design that used crop planting intensity (CPI) as the stratification criterion, with a stratum number of 5 and a stratum interval of 20% decreased the spatial autocorrelation level to almost zero for the maize and rice area included in sampling units within each stratum.  Therefore, the traditional sampling methods can be used to estimate the two crop acreages.  Compared with CPI, there was still a strong spatial correlation among the two crop acreages included in the sampling units belonging to each stratum when cultivated land fragmentation and ground slope were used as stratification criterion.  As far as the selection of stratification criteria and sampling unit size is concerned, this study provides a basis for formulating a reasonable spatial sampling scheme to estimate crop acreage.
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Expression of mitogen-activated protein kinase double-stranded RNA in cucumber has no apparent effect on the diversity of rhizosphere archaea
CHEN Guo-hua, TIAN Xue-liang, WANG Dian-dong, LING Jian, MAO Zhen-chuan, YANG Yu-hong, XIE Bing-yan
2017, 16 (10): 2239-2245.   DOI: 10.1016/S2095-3119(16)61594-0
Abstract612)      PDF in ScienceDirect      
The expression of mitogen-activated protein kinase (mapk) double-stranded RNA in cucumber is effective in controlling infestations of the root-knot nematode Meloidogyne incognita.  However, little is known about the ecological effects of transgenic plants.  Here, we analyzed the diversity of 16S rDNA genes derived from the rhizosphere archaea of transgenic cucumber plants as an indicator of ecological change.  A total of 17 and 18 operational taxonomic units were detected in the rhizospheres of non-transgenic cucumber and mapk dsRNA-expressing plants, respectively.  No significant difference was observed between the two groups according to Shannon and Simpson indices.  In soil samples of the two rhizospheres, the dominant group was Crenarchaeota at the phylum level, with Staphylothermus, Methanococcus, Pyrodictium and Sulfolobus the abundant taxa at the genus level.  These results suggest that expressing mapk double-stranded (ds) RNA in cucumber has no apparent effect on the diversity of rhizosphere archaea, and provide powerful evidence for the ecological safety of transgenic cucumber expressing mapk dsRNA.   
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Effects of RNAi Silencing of SSIII Gene on Phosphorus Content and Characteristics of Starch in Potato Tubers
DU Hong-hui, YANG Tao, MA Cong-yu, FENG Dan, ZHANG Ning, SI Huai-jun, WANG Di
2012, 12 (12): 1985-1992.   DOI: 10.1016/S1671-2927(00)8735
Abstract1247)      PDF in ScienceDirect      
The sense and antisense fragments of the soluble starch synthase (SSIII) gene and the intron fragment of somatic embryogenesis receptor-like kinase (SERK1) gene were cloned from potato using PCR techniques. The RNAi plant expression vectors pBI-SSIII-RNAi and pBIC-SSIII-RNAi were constructed which containing fusion fragment of “sense fragment-intron-antisense fragment” driven by the constitutive expression promoter CaMV 35S and the tuber-specific expression promoter CIPP, respectively. The putative transgenic plants of potato cultivars Kexin-1 and Kexin-4 were obtained using Agrobacterium-mediated transformation method. PCR assay showed that the interference fragment of SSIII gene was integrated into potato genome. The RT-PCR analysis showed that the expression of SSIII gene was repressed apparently on the transcription level. Starch granules of the transgenic potato plants were different in morphology and became cracked in starch granule centre compared with the non-transgenic control plants. The amylose content of starch was increased by 2.68-29.05%, amylopectin to amylose ratio of starch had declined significantly, and the phosphorus content of the starch of the transgenic plants was reduced 9.94-58.36% compared with control plants. The results could provide certain foundation for improvement of potato starch quality.
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