Ammonia (NH₃) emissions should be mitigated to improve environmental quality.  Croplands are one of the largest NH₃ sources, they must be managed properly to reduce their emissions while achieving the target yields.  Herein, we report the NH₃ emissions, crop yield and changes in soil fertility in a long-term trial with various fertilization regimes, to explore whether NH₃ emissions can be significantly reduced using the 4R nutrient stewardship (4Rs), and its interaction with the organic amendments (i.e., manure and straw) in a wheat–maize rotation.  Implementing the 4Rs significantly reduced NH₃ emissions to 6 kg N ha^–1 yr^–1 and the emission factor to 1.72%, without compromising grain yield (12.37 Mg ha^–1 yr^–1) and soil fertility (soil organic carbon of 7.58 g kg^–1) compared to the conventional chemical N management.  When using the 4R plus manure, NH₃ emissions (7 kg N ha^–1 yr^–1) and the emission factor (1.74%) were as low as 4Rs, and grain yield and soil organic carbon increased to 14.79 Mg ha^–1 yr^–1 and 10.09 g kg^–1, respectively.  Partial manure substitution not only significantly reduced NH₃ emissions but also increased crop yields and improved soil fertility, compared to conventional chemical N management.  Straw return exerted a minor effect on NH₃ emissions.  These results highlight that 4R plus manure, which couples nitrogen and carbon management can help achieve both high yields and low environmental costs.

Soil microorganisms play important roles in nitrogen transformation.  The aim of this study was to characterize changes in the activity of nitrogen transformation enzymes and the abundance of nitrogen function genes in rhizosphere soil aerated using three different methods (continuous flooding (CF), continuous flooding and aeration (CFA), and alternate wetting and drying (AWD)).  The abundances of amoA ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB), nirS, nirK, and nifH genes, and the activities of urease, protease, ammonia oxidase, nitrate reductase, and nitrite reductase were measured at the tillering (S1), heading (S2), and ripening (S3) stages.  We analyzed the relationships of the aforementioned microbial activity indices, in addition to soil microbial biomass carbon (MBC) and soil microbial biomass nitrogen (MBN), with the concentration of soil nitrate and ammonium nitrogen.  The abundance of nitrogen function genes and the activities of nitrogen invertase in rice rhizosphere soil were higher at S2 compared with S1 and S3 in all treatments.  AWD and CFA increased the abundance of amoA and nifH genes, and the activities of urease, protease, and ammonia oxidase, and decreased the abundance of nirS and nirK genes and the activities of nitrate reductase and nitrite reductase, with the effect of AWD being particularly strong.  During the entire growth period, the mean abundances of the AOA amoA, AOB amoA, and nifH genes were 2.9, 5.8, and 3.0 higher in the AWD treatment than in the CF treatment, respectively, and the activities of urease, protease, and ammonia oxidase were 1.1, 0.5, and 0.7 higher in the AWD treatment than in the CF treatment, respectively.  The abundances of the nirS and nirK genes, and the activities of nitrate reductase and nitrite reductase were 73.6, 84.8, 10.3 and 36.5% lower in the AWD treatment than in the CF treatment, respectively.  The abundances of the AOA amoA, AOB amoA, and nifH genes were significantly and positively correlated with the activities of urease, protease, and ammonia oxidase, and the abundances of the nirS and nirK genes were significantly positively correlated with the activities of nitrate reductase.  All the above indicators were positively correlated with soil MBC and MBN.  In sum, microbial activity related to nitrogen transformation in rice rhizosphere soil was highest at S2.  Aeration can effectively increase the activity of most nitrogen-converting microorganisms and MBN, and thus promote soil nitrogen transformation. 

Alternate partial root-zone drip fertigation (ADF) is a combination of alternating irrigation and drip fertigation, with the potential to save water and increase nitrogen (N) fertilizer efficiency.  A 2-year greenhouse experiment was conducted to evaluate the effect of different fertigation frequencies on the distribution of soil moisture and nutrients and tomato yield under ADF.  The treatments included three ADF frequencies with intervals of 3 days (F3), 6 days (F6) and 12 days (F12), and conventional drip fertigation as a control (CK), which was fertilized once every 6 days.  For the ADF treatments, two drip tapes were placed 10 cm away on each side of the tomato row, and alternate drip irrigation was realized using a manual valve on the distribution tapes.  For the CK treatment, a drip tape was located close to the roots of the tomato plants.  The total N application rate of all treatments was 180 kg ha–1.  The total irrigation amounts applied to the CK treatment were 450.6 and 446.1 mm in 2019 and 2020, respectively; and the irrigation amounts applied to the ADF treatments were 60% of those of the CK treatment.   The F3 treatment resulted in water and N being distributed mainly in the 0–40-cm soil layer with less water and N being distributed in the 40–60-cm soil layer.  The F6 treatment led to 21.0 and 29.0% higher 2-year average concentration of mineral N in the 0–20 and 20–40-cm soil layer, respectively and a 23.0% lower N concentration in the 40–60-cm soil layer than in the CK treatment.  The 2-year average tomato yields of the F3, F6, F12, and CK treatments were 107.5, 102.6, 87.2, and 98.7 t ha–1, respectively.  The tomato yield of F3 was significantly higher (23.3%) than that in the F12 treatment, whereas there was no significant difference between the F3 and F6 treatment.  The F6 treatment resulted in yield similar to the CK treatment, indicating that ADF could maintain tomato yield with a 40% saving in water use.  Based on the distribution of water and N, and tomato yield, a fertigation frequency of 6 days under ADF should be considered as a water-saving strategy for greenhouse tomato production.

Indigenous chicken products are increasingly favored by consumers due to their unique meat and egg quality.  However, the relatively poor egg-laying performance largely impacts the economic benefits and hinders sustainable development of the local chicken industry.  Thus, excavating key genes and effective molecular markers associated with egg-laying performance is necessary to improve egg production via genetic selection in indigenous breeds.  In the present study, comparative hypothalamic transcriptome between pre-laying (15 weeks old) and peak-laying (30 weeks old) Lushi blue-shelled-egg (LBS) chicken was performed.  A total of 518 differentially expressed genes (DEGs) were identified.  Among the DEGs, 64 genes were enriched in 10 Gene Ontology (GO) terms associated with reproductive regulation via GO analysis and considered as potential candidate genes regulating egg-laying performance.  Of the 64 genes, 16 showed high connectivity (degree≥12) by protein–protein interaction (PPI) network analysis and were considered as potential core candidate genes (PCCGs).  To further look for key candidate genes from the PCCGs, firstly, the expression patterns of the 16 genes were examined in the hypothalamus of two indigenous breeds (LBS and Gushi (GS) chickens) between the pre-laying and peak-laying stages using quantitative real-time PCR (qRT-PCR).  Eleven out of the 16 genes showed significantly differential expression (P<0.05) with the same changing trends in the two breeds.  Then, correlations between the expression levels of the above 11 genes and egg numbers and reproductive hormone concentrations in serum were investigated in high-yielding and low-yielding GS chickens.  Of the 11 genes, eight showed significant correlations (P<0.05) between their expression levels and egg numbers, and between expression levels and reproductive hormone concentration in serum.  Furthermore, an association study on single nucleotide polymorphisms (SNPs) identified in these eight genes and egg production traits was carried out in 640 GS hens, and a significant association (P<0.05) between the SNPs and egg numbers was confirmed.  In conclusion, the eight genes, including CNR1, AP2M1, NRXN1, ANXA5, PENK, SLC1A2, SNAP25 and TRH, were demonstrated as key genes regulating egg production in indigenous chickens, and the SNPs sites within the genes might be served as markers to provide a guide for indigenous chicken breeding.  These findings provide a novel insight for further understanding the regulatory mechanisms of egg-laying performance and developing molecular markers to improve egg production of indigenous breeds.

Environmental conditions greatly affect the growth of rice. To investigate the geographic differences in yield formation of single-season high-yielding hybrid rice in southern China, experiments were conducted in 2017 and 2018 in the upper and middle–lower reaches of the Yangtze River with 10–30 main locally planted high-yielding hybrid cultivars used as materials. Compared with rice planted in the middle–lower reaches of the Yangtze River, rice planted in the upper reaches has a longer tillering duration, higher accumulated temperature (≥10°C) during tillering period, but lower accumulated temperature and solar radiation from initial booting to maturity. Yield traits comparison between the upper and the middle–lower reaches of Yangtze River showed that the former had 48.1% more panicles per unit area while the latter had 46.4% more grains per panicle; the rice yield in the former was positively correlated with the seed setting rate and the dry matter accumulation before heading, while the latter was positively correlated with grains per panicle and dry matter accumulation from booting to maturity. Comparison of the same variety Tianyouhuazhan planted in different regions showed there was a significant positive correlation between panicle number and the duration of and accumulated temperature during the tillering period (r=0.982**, r=0.993**, respectively), and between grains per panicle and accumulated solar radiation during booting period (r=0.952*). In the upper reaches of the Yangtze River, more than 90% of cultivars with an yield of greater than 11 t ha^–1 had an effective panicle number of 250–340 m^–2, and there was a significant negative correlation between seed setting rate and grains per panicle; therefore, the high-yielding rice production in these regions with a long effective tillering period (>40 d) should choose varieties with moderate grains per panicle, adopt crop managements such as good fertilizer and water measures during vegetative growth period to ensure a certain number of effective panicles, and to increase the dry matter accumulation before heading. While in regions with a short effective tillering period (<20 d) but good sunshine conditions during the reproductive growth period, such as the middle–lower reaches of the Yangtze River, high-yielding rice production should choose cultivars with large panicles, adopt good water and fertilizer managements during the reproductive growth period to ensure the formation of large panicles and the increase of dry matter accumulation after heading.

Three different chlorophyll-deficient rice isogenic lines chl, fgl and pgl, and their recurrent parent zhefu802 (zf802) wereused to study effects of leaf color on photosynthesis, dry matter accumulation, yield, and quality in early season indicarice. Analysis showed that the chlorophyll (Chl.) a/b ratio of isogenic lines chl-8, pgl and fgl was 5.35, 10.00 and 15.46,respectively, among them, line fgl had higher leaf area index (LAI), higher net photosynthetic rate and higher grain-fillingrate than its recurrent parent zf802 at the later period of grain filling stage; while LAI, net photosynthetic rate and drymatter accumulated in lines chl-8 and pgl were lower than in zf802. Differences were found in the grain yield and qualityamong chlorophyll deficient isogenic lines, lines fgl, chl-8 and zf802 had similar grain yield, which was significantly higherthan that of pgl; the highest milling quality was observed in isogenic line fgl, with relatively high protein content. Thisstudy showed that isogenic line fgl would become a unique material for the development of high yield rice with high grainquality because of its slow aging process and relative steady grain-filling rate.