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Journal of Integrative Agriculture
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Integration of the metabolome and transcriptome reveals the metabolites and genes related to nutritional and medicinal value in
Coriandrum sativum
WU Tong, FENG Shu-yan, YANG Qi-hang, Preetida J BHETARIYA, GONG Ke, CUI Chun-lin, SONG Jie, PING Xiao-rui, PEI Qiao-ying, YU Tong, SONG Xiao-ming
2021, 20 (
7
): 1807-1818. DOI:
10.1016/S2095-3119(20)63358-5
Abstract
(
137
)
PDF in ScienceDirect
Coriandrum sativum
(Coriander) or Chinese parsley is a culinary herb with multiple medicinal effects, which is widely used in cooking and traditional medicine. It is enriched with essential oils and anti-oxidant compounds with unknown significance. To explore the untapped reservoir of Coriander, we studied the transcriptome and metabolic profiles from three developmental stages. Here, we identified 10 tyrosine metabolic pathway-related genes (
TMPRGs
), six porphyrins and chlorophyll metabolic pathway-related genes (
PCMPRGs
), and five Vitamin E metabolic pathway-related genes (
VEMPRGs
). These genes were associated with the early development of Coriander. Our analysis suggests that these pathways are involved in the production of critical phenolic metabolites. Furthermore, we constructed the interaction network between these pathway-related genes and transcription factors (TFs), which supported the regulatory pathways for phenolic metabolites. Interestingly, we identified several nutritional or medicinally relevant metabolites, including 59 phenols, two polyamines, 12 alkaloids, and one terpenoid. The higher concentrations of metabolites were from caffeic acid, agmatine, and its derivatives. We found higher levels of caffeic acid and agmatine at 30 days compared to 60 or 90 days. This study provides evidence to stimulate further investigation of the role of these metabolites in medicinal and nutritional research.
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Molecular cloning and expression patterns of two small heat shock proteins from
Chilo suppressalis
(Walker)
SONG Jie, LU Ming-xing, DU Yu-zhou
2020, 19 (
6
): 1522-1529. DOI:
10.1016/S2095-3119(19)62808-X
Abstract
(
108
)
PDF in ScienceDirect
Small heat shock proteins (sHSPs) are a very complex protein superfamily that increase insect temperature tolerance. In order to deeply understand the function and role of sHSPs in
Chilo suppressalis
(Walker), this study isolated and identified two CsHSP genes lacking introns from
C. suppressalis
,
Cshsp23.9
and
Cshsp27.3
. The cDNA full-length of
Cshsp23.9
and
Cshsp27.3
were 909 and 1 036 bp encoding 220 and 242 amino acids, respectively. Alignment with homologs and phylogenetic analysis indicated
Cshsp23.9
and
Cshsp27.3
were two new types of Cshsps in
C. suppressalis
. Real-time quantitative PCR (qPCR) revealed that
Cshsp23.9
had the highest relative expression in hindgut compared with other tissues (head, epidermis, foregut, midgut, fat body, Malpighian tubules, and hemocytes), while
Cshsp27.3
expressed the highest in fat body content. When exposed to thermal stress from –11 to 43°C for 2 h, two genes showed different expression patterns.
Cshsp23.9
did not respond to low temperature, but could be up-regulated by high temperature and the highest expression temperature was at 36°C.
Cshsp27.3
could only be induced by mild temperature, with the highest expression at 15 and 30°C. In conclusion,
Cshsp23.9
and
Cshsp27.3
existed in different tissues/organs of
C. suppressalis
, and played different important roles in
C. suppressalis
to resist temperature stress and regulate physiological activities.
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Effects of Dietary Energy Level on the Expression of the HSL Gene in Different Tissues of Sheep
ZHANG Ying-jie, LIU Yue-qin, CHENG Shan-yan, SONG Jie
2012, 12 (
7
): 1167-1172. DOI:
10.1016/S1671-2927(00)8643
Abstract
(
1197
)
PDF in ScienceDirect
A total of 36 four-mon-old hybrid lambs (Dorset×Thin-tailed Han sheep) with similar body weight (BW) were randomly allocated to three dietary treatments with different energy (7.21, 10.33 and 13.49 MJ d-1 ME) but similar protein levels. The animals were slaughtered and subcutaneous fat, longissimus dorsi muscle, femoral biceps muscle and cardiac muscle tissue samples were taken after being treated for 40 d. The samples were then subjected to quantitative PCR to determine mRNA expression of hormone-sensitive lipase (HSL) in different tissues in the laboratory. The findings showed that the abundance of HSL mRNA decreased with the elevation of dietary energy. In the subcutaneous fatty tissue, the HSL mRNA levels showed significant differences among the three groups (P<0.01); in the longissimus dorsi and femoral biceps muscles, the HSL mRNA level in the low energy group was significantly higher than that in the moderate and high energy groups (P<0.01). In the cardiac muscle, the HSL mRNA level in the moderate energy group was significantly different from the low and high energy groups (P<0.05). The number of HSL copies (Qty) in different tissues of sheep was different, it was greater in the subcutaneous fat than in longissimus dorsi muscle, femoral biceps muscle and heart.
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