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Fingerprinting 146 Chinese chestnut (Castanea mollissima Blume) accessions and selecting a core collection using SSR markers
NIE Xing-hua, WANG Ze-hua, LIU Ning-wei, SONG Li, YAN Bo-qian, XING Yu, ZHANG Qing, FANG Ke-feng, ZHAO Yong-lian, CHEN Xin, WANG Guang-peng, QIN Ling, CAO Qing-qin
2021, 20 (5): 1277-1286.   DOI: 10.1016/S2095-3119(20)63400-1
Abstract160)      PDF in ScienceDirect      
Chinese chestnut is an important nut tree around the world.  Although the types of Chinese chestnut resources are abundant, resource utilization and protection of chestnut accessions are still very limited.  Here, we fingerprinted and determined the genetic relationships and core collections of Chinese chestnuts using 18 fluorescently labeled SSR markers generated from 146 chestnut accessions.  Our analyses showed that these markers from the tested accessions are highly polymorphic, with an average allele number (Na) and polymorphic information content (PIC) of 8.100 and 0.622 per locus, respectively.  Using these strongly distinguishing markers, we successfully constructed unique fingerprints for 146 chestnut accessions and selected seven of the SSR markers as core markers to rapidly distinguish different accessions.  Our exploration of the genetic relationships among the five cultivar groups indicated that Chinese chestnut accessions are divided into three regional type groups: group I (North China (NC) and Northwest China (NWC) cultivar groups), group II (middle and lower reaches of the Yangtze River (MLY) cultivar group) and group III (Southeast China (SEC) and Southwest China (SWC) cultivar groups).  Finally, we selected 45 core collection members which represent the most genetic diversity of Chinese chestnut accessions.  This study provides valuable information for identifying chestnut accessions and understanding the phylogenetic relationships among cultivar groups, which can serve as the basis for efficient breeding in the future.
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The MADS-box transcription factor CmAGL11 modulates somatic embryogenesis in Chinese chestnut (Castanea mollissima Blume)
GAO Yue-rong, SUN Jia-chen, SUN Zhi-lin, XING Yu, ZHANG Qing, FANG Ke-feng, CAO Qing-qin, QIN Ling
2020, 19 (4): 1033-1043.   DOI: 10.1016/S2095-3119(20)63157-4
Abstract139)      PDF in ScienceDirect      
Somatic embryogenesis (SE) is an effective approach of in vitro regeneration that depends on plant cell totipotency. However, largely unknown of molecular mechanisms of SE in woody plants such as Chinese chestnut (Castanea mollissima Blume), limits the development of the woody plant industry. Here, we report the MADS-box transcription factor CmAGL11 in Chinese chestnut. CmAGL11 transcripts specifically accumulated in the globular embryo. Overexpression of CmAGL11 in chestnut callus enhanced its SE capacity, and the development of somatic embryos occurred significantly faster than in the control. RNA-seq results showed that CmAGL11 affects the expression of several genes related to the gibberellin, auxin, and ethylene pathways. Moreover, the analysis of DNA methylation status indicated that the promoter methylation plays a role in regulation of CmAGL11 expression during SE. Our results demonstrated that CmAGL11 plays an important role in the SE process in Chinese chestnut, possibly by regulating gibberellin, auxin, and ethylene pathways. It will help establish an efficient platform to accelerate genetic improvement and germplasm innovation in Chinese chestnut.
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Genetic variation of yellow pigment and its components in foxtail millet (Setaria italica (L.) P. Beauv.) from different eco-regions in China
YANG Yan-bing, JIA Guan-qing, DENG Li-gang, QIN Ling, CHEN Er-ying, CONG Xin-jun, ZOU Renfeng, WANG Hai-lian, ZHANG Hua-wen, LIU Bin, GUAN Yan-an, DIAO Xian-min, YIN Yan-ping
2017, 16 (11): 2459-2469.   DOI: 10.1016/S2095-3119(16)61598-8
Abstract834)      PDF in ScienceDirect      
    Kernel color is an important trait for assessing the commercial and nutritional quality of foxtail millet.  Yellow pigment content (YPC) and carotenoid components (lutein and zeaxanthin) of 270 foxtail millet accessions, including 50 landraces and 220 improved cultivars, from four different eco-regions in China were surveyed using spectrophotometry and high performance liquid chromatography methods.  Results indicated that YPC had rich variance, ranging from 1.91 to 28.54 mg kg–1, with an average value of 17.80 mg kg–1.  The average YPC of improved cultivars (18.31 mg kg–1) was significantly higher than that of landraces (15.51 mg kg–1).  The YPC in cultivars from the Loess Plateau spring sowing region (LPSSR) was the highest (20.59 mg kg–1), followed by the North China summer sowing region (NCSSR, 18.25 mg kg–1), the northeast spring sowing region (NSSR, 17.25 mg kg–1), and the Inner Mongolia Plateau spring sowing region (IMPSSR, 13.92 mg kg–1).  The variation coefficients of YPC in cultivars from NSSR, LPSSR, and IMPSSR were higher than that from NCSSR.  A similar carotenoid profile was also obtained for 270 foxtail millet cultivars.  Lutein and zeaxanthin accounted for approximately 55–65% of YPC in accessions.  The lutein content was higher than zeaxanthin content in all cultivars.  The ratio of lutein to zeaxanthin ranged from 1.51 to 6.06 with an average of 3.34.  YPC was positively correlated with lutein (r=0.935, P<0.01), zeaxanthin (r=0.808, P<0.01), and growth duration (r=0.488, P<0.01), whereas it was negatively correlated with grain protein (r=−0.332, P<0.01) and 1 000-kernel weight (r=−0.153, P<0.05).  Our study is useful for screening and selecting cultivars with high levels of yellow pigment and for enhancing phytochemical concentrations in breeding programs.
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