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Biotic and abiotic stress-responsive genes are stimulated to resist drought stress in purple wheat
LI Xiao-lan, Lü Xiang, WANG Xiao-hong, PENG Qin, ZHANG Ming-sheng, REN Ming-jian
2020, 19 (1): 33-50.   DOI: 10.1016/S2095-3119(19)62659-6
Abstract131)      PDF in ScienceDirect      
Triticum aestivum L. cv. Guizi 1 (GZ1) is a drought-tolerant local purple wheat cultivar.  It is not clear how purple wheat resists drought stress, but it could be related to anthocyanin biosynthesis.  In this study, transcriptome data from drought-treated samples and controls were compared.  Drought slightly reduced the anthocyanin, protein and starch contents of GZ1 grains and significantly reduced the grain weight. Under drought stress, 16 682 transcripts were reduced, 27 766 differentially expressed genes (DEGs) were identified, and 379 DEGs, including DREBs, were related to defense response.  The defense-response genes included response to water deprivation, reactive oxygen, bacteria, fungi, etc.  Most of the structural and regulatory genes in anthocyanin biosynthesis were downregulated, with only TaDFR, TaOMT, Ta5,3GT, and TaMYB-4B1 being upregulated. TaCHS, TaF3H, TaCHI, Ta4CL, and TaF3’H are involved in responses to UV, hormones, and stimulus.  TaCHS-2D1, TaDFR-2D2, TaDFR-7D, TaOMT-5A, Ta5,3GT-1B1, Ta5,3GT-3A, and Ta5,3GT-7B1 connect anthocyanin biosynthesis with other pathways, and their interacting proteins are involved in primary metabolism, genetic regulation, growth and development, and defense responses.  There is further speculation about the defense-responsive network in purple wheat.  The results indicated that biotic and abiotic stress-responsive genes were stimulated to resist drought stress in purple wheat GZ1, and anthocyanin biosynthesis also participated in the drought defense response through several structural genes.
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Transcriptional profile of gene clusters involved in the methylerythritol phosphate pathway in Bacillus subtilis 916
XIAO Ya-jing, GAO Tan-tan, PENG Qi, ZHANG Jie, SUN Dong-mei, SONG Fu-ping
2019, 18 (3): 644-655.   DOI: 10.1016/S2095-3119(18)62001-5
Abstract206)      PDF (680KB)(162)      
The methylerythritol phosphate pathway is responsible for the biosynthesis of terpenoids, the largest class of secondary metabolites.  Although the structures and functions of the proteins involved in this pathway have been well studied in Bacillus subtilis, only a few studies have reported the transcriptional profile of the genes involved.  Therefore, we analyzed methylerythritol phosphate pathway genes in the genome of B. subtilis 916, which has been developed as a biological control agent against some rice diseases in China.  Our results showed that methylerythritol phosphate pathway genes were distributed throughout the genome of this strain.  These genes were transcribed during both the exponential and stationary phases.  We further confirmed the transcription units of dxs, dxr, ispD, ispF, ipK, ispG, ispH, idi, and ispA in B. subtilis 916 through reverse transcription-PCR analyses; the results showed that these nine genes were located in seven different operons.  The transcript start sites of the seven different operons were determined by 5´-rapid amplification of cDNA ends-PCR.  Thus, our study provides a molecular basis at the transcriptional level for investigating homoterpene synthesis in the methylerythritol phosphate pathway of B. subtilis 916.
 
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Inheritance and molecular characterization of resistance to AHAS-inhibiting herbicides in rapeseed
HU Mao-long, PU Hui-ming, GAO Jian-qin, LONG Wei-hua, CHEN Feng, ZHOU Xiao-ying, ZHANG Wei, PENG Qi, CHEN Song, ZHANG Jie-fu
2017, 16 (11): 2421-2433.   DOI: 10.1016/S2095-3119(17)61659-9
Abstract791)      PDF in ScienceDirect      
Rapeseed is a very important oil crop in China; however, its production is challenging due to the absence of effective weed management strategies.  This is predominantly because of a shortage of herbicide resistance genes.  Acetohydroxyacid synthase (AHAS) herbicides inhibit AHAS, a key enzyme involved in branched-chain amino acid synthesis that is required for plant growth.  A rapeseed line designated M342 with AHAS herbicide resistance was developed through seed mutagenesis and was studied to assess the level and mode of inheritance of the resistance and to identify the molecular basis of resistance.  M342 possessed a high level of cross-resistance to sulfonylureas (SUs) and imidazolinones (IMIs).  This resistance was due to AHAS insensitivity to these herbicides and was inherited as a dominant trait conferred by a single nuclear-encoded gene.  Molecular analysis revealed the presence of a Trp574Leu mutation in M342, and an allele-specific cleaved amplified polymorphic sequence (AS-CAPS) marker was developed and cosegregated with herbicide resistance in the F2, BC1, and BC2 populations.  This mutation altered the transcript levels of BnAHAS1 and BnAHAS3 in M342 compared with those in the wild type, but it did not affect the agronomic or quality traits.  The simple genetic inheritance of this mutation and the availability of the cleaved amplified polymorphic sequence (CAPS) marker and herbicide resistance gene should facilitate the development of herbicide-resistant rapeseed cultivars for effective weed control in China.  
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Identification of similar transcriptional regulatory mechanisms in multiple cry genes in Bacillus thuringiensis HD12
SONG Zhi-ru, PENG Qi, SHU Chang-long, ZHANG Jie, SUN Dong-mei, SONG Fu-ping
2017, 16 (01): 135-143.   DOI: 10.1016/S2095-3119(16)61398-9
Abstract690)           
Bacillus thuringiensis subspecies morrisoni strain HD12, whose genome harbors multiple insecticidal protein-encoding genes, includes eight cry genes, as indicated by genome sequencing.  This strain produces crystals that are toxic to lepidopteran species.  These crystal inclusions were purified by sucrose gradients and sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE), followed by liquid chromatography-mass spectrometry, and found to contain five proteins (Cry1Da, Cry1Ae, Cry1Bb, Cry1Fb, and Cry1Ja).  The transcriptional activities of the cry1Da, cry1Ae, cry1Bb, cry1Fb, and cry1Ja promoters indicated that transcription of cry1Da is controlled by SigE; however, the other four cry genes were found to be controlled by both SigE and SigK.  The activities of the cry1Ja and cry1Fb promoters were the strongest among the five genes studied.  These promoters were therefore used to direct the expression of the Cry1Ac- and Cry2Ab-encoding genes concurrently in a single strain.  Our findings indicate that promoters with the same transcriptional profile may be used to direct the expression of different cry genes in one strain.  Our results are expected to be valuable for the construction of strains with efficient expression of multiple cry genes in order to overcome current limitations associated with the application of B. thuringiensis-based insecticides.
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Interactions of water and nitrogen addition on soil microbial community composition and functional diversity depending on the inter-annual precipitation in a Chinese steppe
SUN Liang-jie, QI Yu-chun, DONG Yun-she, HE Ya-ting, PENG Qin, LIU Xin-chao, JIA Jun-qiang, GUO Shu-fang, CAO Cong-cong
2015, 14 (4): 788-799.   DOI: 10.1016/S2095-3119(14)60773-5
Abstract2021)      PDF in ScienceDirect      
Water and nitrogen are primary limiting factors in semiarid grassland ecosystems. Our knowledge is still poor regarding the interactive effects of water and N addition on soil microbial communities, although this information is crucial to reveal the mechanisms of the terrestrial ecosystem response to global changes. We addressed this problem by conducting a field experiment with a 15% surplus of the average rainfall under three levels of N addition (50, 100, and 200 kg N ha–1 yr–1) in two consecutive years in Inner Mongolia, China. Microbial community composition and functional diversity were analyzed based on phospholipid fatty acids (PLFA) and BIOLOG techniques, respectively. The results showed that water addition did not affect the soil microbial community composition, but much more yearly precipitation generally decreased the PLFA concentration, which implied a fast response of soil microbes to changes of water condition. Soil fungi was depressed only by N addition at the high level (200 kg N ha–1 yr–1) and without hydrologic leaching, while Gram-negative bacteria was suppressed probably by plant competition at high level N addition but with hydrologic leaching. The study found unilateral positive/negative interactions between water and N addition in affecting soil microbial community, however, climate condition (precipitation) could be a significant factor in disturbing the interactions. This study highlighted that: (1) The sustained effect of pulsed water addition was minimal on the soil microbial community composition but significant on the microbial community functional diversity and (2) the complex interaction between water and N addition on soil microbial community related to the inter-annual variation of the climate and plant response.
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