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SlTPP4 participates in ABA-mediated salt tolerance by enhancing root architecture in tomato
DU Dan, HU Xin, SONG Xiao-mei, XIA Xiao-jiao, SUN Zhen-yu, LANG Min, PAN Yang-lu, ZHENG Yu, PAN Yu
2023, 22 (8): 2384-2396.   DOI: 10.1016/j.jia.2023.07.015
Abstract190)      PDF in ScienceDirect      

Salinity tolerance is an important physiological index for crop breeding.  Roots are typically the first plant tissue to withstand salt stress.  In this study, we found that the tomato (Solanum lycopersicum) trehalose-6-phosphate phosphatase (SlTPP4) gene is induced by abscisic acid (ABA) and salt, and is mainly expressed in roots.  Overexpression of SlTPP4 in tomato enhanced tolerance to salt stress, resulting in better growth performance.  Under saline conditions, SlTPP4 overexpression plants demonstrated enhanced sucrose metabolism, as well as increased expression of genes related to salt tolerance.  At the same time, expression of genes related to ABA biosynthesis and signal transduction was enhanced or altered, respectively.  In-depth exploration demonstrated that SlTPP4 enhances Casparian band development in roots to restrict the intake of Na+.  Our study thus clarifies the mechanism of SlTPP4-mediated salt tolerance, which will be of great importance for the breeding of salt-tolerant tomato crops.

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Genome-wide detection of selective signatures in a Jinhua pig population
XU Zhong, SUN Hao, ZHANG Zhe, Zhao Qing-bo, Babatunde Shittu Olasege, Li Qiu-meng, Yue Yang, Ma Pei-pei, Zhang Xiang-zhe, Wang Qi-shan, Pan Yu-chun
2020, 19 (5): 1314-1322.   DOI: 10.1016/S2095-3119(19)62833-9
Abstract119)      PDF in ScienceDirect      
The aim of this study was to detect evidence for signatures of recent selection in the Jinhua pig genome.  These results can be useful to better understand the regions under selection in Jinhua pigs and might shed some lights on groups of genes that control production traits.  In the present study, we performed extended haplotype homozygosity (EHH) tests to identify significant core regions in 202 Jinhua pigs.  A total of 26 161 core regions spanning 636.42 Mb were identified, which occupied approximately 28% of the genome across all autosomes, and 1 158 significant (P<0.01) core haplotypes were selected.  Genes in these regions were related to several economically important traits, including meat quality, reproduction, immune responses and exterior traits.  A panel of genes including ssc-mir-365-2, KDM8, RABEP2, GSG1L, RHEB, RPH3AL and a signal pathway of PI3K-Akt were detected with the most extreme P-values.  The findings in our study could draw a comparatively genome-wide map of selection signature in the pig genome, and also help to detect functional candidate genes under positive selection for further genetic and breeding research in Jinhua and other pigs.
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Strawberry vein banding virus P6 protein intracellular transport and an important domain identification
PAN Yuan, ZHOU Xiu-hong, LI Shuai, FENG Ming-feng, SHI Man-ling, ZUO Deng-pan, JIANG Xi-zi, CHEN Jing, HU Ya-hui, ZHANG Xiang-xiang, JIANG Tong
2018, 17 (09): 2031-2041.   DOI: 10.1016/S2095-3119(18)61978-1
Abstract376)      PDF (13957KB)(271)      
Strawberry vein banding virus (SVBV)-infected strawberry cells contain cytoplasmic inclusions with isometric particles.  To identify the components of the inclusions, green fluorescent protein (GFP) was fused to the carboxy-terminus (C-terminus) of SVBV open reading frames, these constructs were separately transformed into Agrobacterium tumefaciens and infiltrated into Nicotiana benthamiana leaves.  Results showed that the SVBV P6 protein assembled into prominent and amorphous inclusion bodies (IBs).  To investigate P6 subcellular localization, P6-GFP was ectopically expressed in N. benthamiana leaves by agroinfiltration and then stained with 4´,6-diamidino-2-phenylindole (DAPI).  We found the P6 protein accumulated in the nuclei and also formed cytoplasmic IBs with different sizes.  To further determine the location of P6 IBs in the cytoplasm, and explore whether the P6 IBs move freely or depend on cytoskeleton and endoplasmic reticulum (ER), the microfilament marker protein (GFP-ABD2-GFP), microtubules marker protein (mCherry-MAP65-1) and ER marker protein (mCherry-HDEL) were separately coexpressed with P6-GFP and into N. benthamiana leaves by agroinfiltration, exhibiting that P6 IBs aligned with cytoskeleton and endoplasmic reticulum.  Meanwhile, coinfiltration of P1 and P6 indicated the P6 colocalized with the P1 protein at periphery of cells.  The P6 protein contains one C-terminal nuclear localization signal (NLS) region, a P6 protein mutant with a deleted NLS did not localize in the nucleus, did not form IBs, and was unable to facilitate exogenous GFP expression.  These results demonstrate that the deleted NLS region is an important P6 domain required for biological functions.  In summary, the mobile P6 IBs are associated with ER, microfilaments and microtubules and move along microfilaments to the SVBV P1 protein in the PD. 
 
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Establishment of a tetracycline-off and heat shock-on gene expression system in tobacco
ZHOU You, LI Jin-hua, PAN Yu, ZHENG Yu, PAN Yang-lu, DING Yu-mei, SU Cheng-gang, ZHANG Xing-guo
2017, 16 (05): 1112-1119.   DOI: 10.1016/S2095-3119(16)61514-9
Abstract1017)      PDF in ScienceDirect      
The tetracycline (Tet)-off gene expression regulation system based on the TetR-VP16/Top10 construct has not been widely utilized in plants, for its highly expressed TetR-VP16 activator is toxic to some plants and repeatedly replenishing tetracycline to turn off the constitutively active system is a tedious process.  To solve these problems, a Tet-off and heat shock (HS)-on gene expression regulation system was constructed in this study.  This system is composed of a chimeric transactivator gene TetR-HSF that is derived from a Tet repressor (TetR) and a HS transcription factor (HSF) controlled by a HS promoter HSP70m, and a Tet operator containing hybrid promoter, Om35S, that drives expression of the β-glucuronidase (GUS) gene.  The resultant system yields a GUS expression pattern similar to that of the HSP70m promoter under inducing temperatures and at 35 and 40°C drives GUS expression to a similar level as the Cauliflower mosaic virus (CaMV) 35S promoter.  Further examination revealed that the TetR-HSF and GUS genes were induced by HS, reaching peak expression after 1 and 6 h treatment, respectively, and the HS induction of the expression system could be inhibited by Tet.  This system will provide a useful tool for transgenic studies of plants in the laboratory and in the field, including transgene function analysis, agronomic trait improvement, biopharmaceutical protein production and others.
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A maize bundle sheath defective mutation mapped on chromosome 1 between SSR markers umc1395 and umc1603
PAN Yu, CHEN Xu-qing, XIE Hua, DENG Lei, LI Xiang-long, ZHANG Xiao-dong, HAN Li-xin, YANG Feng-ping, XUE Jing, ZHANG Li-quan
2015, 14 (10): 1949-1957.   DOI: 10.1016/S2095-3119(15)61130-3
Abstract1205)      PDF in ScienceDirect      
The bsd-pg (bundle sheath defective pale green) mutant is a novel maize mutation, controlled by a single recessive gene, which was isolated from offspring of maize plantlets regenerated from tissue callus of the maize inbred line 501. The characterization was that the biogenesis and development of the chloroplasts was mainly interfered in bundle sheath cells rather than in mesophyll cells. For mapping the bsd-pg, an F2 population was derived from a cross between the mutant bsd-pg and an inbred line Xianzao 17. Using specific locus amplified fragment sequencing (SLAF-Seq) technology, a total of 5 783 polymorphic SLAFs were analysed with 1 771 homozygous alleles between maternal and paternal parents. There were 49 SLAFs, which had a ratio of paternal to maternal alleles of 2:1 in bulked normal lines, and three trait-related candidate regions were obtained on chromosome 1 with a size of 3.945 Mb. For the fine mapping, new simple sequence repeats (SSRs) markers were designed by utilizing information of the B73 genome and the candidate regions were localized a size of 850 934 bp on chromosome 1 between umc1603 and umc1395, including 35 candidate genes. These results provide a foundation for the cloning of bsd-pg by map-based strategy, which is essential for revealing the functional differentiation and coordination of the two cell types, and helps to elucidate a comprehensive understanding of the C4 photosynthesis pathway and related processes in maize leaves.
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Revenue Sharing in Dairy Industry Supply Chain - A Case Study of Hohhot, China
QIAN Gui-xia12, ZHANG Yi-pin1, WU Jian-guo23 and PAN Yue-hong4
2013, 12 (12): 2300-2309.   DOI: 10.1016/S2095-3119(13)60585-7
Abstract1602)      PDF in ScienceDirect      
Dairy industry has become an increasingly important enterprise in China as people’s dietary preferences and composition have changed dramatically with rapid economic development in the past several decades. A number of problems, however, exist in China’s relatively young dairy industry, including the imbalanced allocation of profits throughout the dairy supply chain. One of the root causes of the melamine infant powered milk scandal in 2008 was the unfair profit allocation mechanism in dairy supply chain. The revenue sharing contract approach has proven to be effective in generating market shares and total profits. In this study, we apply the three-stage revenue sharing contract model of Giannoccaro and Pontrandolfo (2004) in an analysis of dairy supply chain to explore its problems in profit allocation and possible solutions to them. The analysis was conducted by a case study of Hohhot, often called as “milk capital of China”. Our results show that the current profit distribution in the dairy supply chain is not balanced: the supermarket’s profit>farmer’s profit>manufacturer’s profit. Under the revenue sharing contract setting, the dairy industry’s total profit increased by 12.49%. By exploring different parameters in the revenue sharing contract model, we have found that a win-win situation can be created among all the members of the supply chain. In dairy supply chain, the ratio of the revenue reserved for the supermarket itself is equal or greater than 47% and the ratio of the revenue reserved for the manufacturer itself is between 46.4 and 50.2%. The values of the parameters that generate a sustainable or win-win situation are related to the bargaining position in the dairy supply chain. The revenue sharing contract has proven to be effective and desirable by all the dairy chain partners in dairy supply chain. The results of this study provide relevant information for improving the dairy supply chain structure and the revenue sharing contract model can be applied to other industries, sectors and regions.
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Characterization of blaCTX-M Gene in One Klebsiella pneumoniae Isolate from Sick Chickens in China
HU Gong-zheng*, HU Han*, LIU Bao-guang*, YUAN Li, LIU Jian-hua, PAN Yu-shan, WU Hua, CHEN Yu-xia
2012, 12 (10): 1714-1720.   DOI: 10.1016/S1671-2927(00)8705
Abstract1555)      PDF in ScienceDirect      
Two Klebsiella pneumoniae isolates (Kpc1 and Kpc2) were obtained from liver samples of seven dead chickens and identified with Vitek-32 automated identification system. Antimicrobial susceptibilities were determined by the microdilution broth method. Detection of genes encoding class A b-lactamases was performed by PCR amplification, and cloning of the ESBL gene was by plasmid restriction and fragments ligation. Conjugation assay, transformation experiments and plasmid profile analysis were performed. The incompatibility group of ESBL-carrying plasmid was determined by the PCR-based replicon typing method. Lastly, the genetic environment was analysed by direct sequencing of the DNA surrounding the ESBL gene. The genes associated with tetracycline and gentamicin resistance were also sought by PCR. The results revealed that the ESBL phenotype-negative strain Kpc2 only showed resistance to ampicillin, amoxicillin, tetracycline, and doxycycline and carried blaTEM-1 and tet(A) genes. The ESBL-producing strain Kpc1 exhibited multidrug resistant phenotype and harbored blaTEM-1, blaCTX-M-14, tet(A), tet(B), and rmtB genes. K. pneumoniae Kpc1 contained four plasmids with molecular sizes of approximately 59, 6.9, 2.8, and 1.6 kb, but only a 59-kb plasmid, carried blaTEM-1 and blaCTX-M-14 genes, was observed in its transconjugant. The incompatibility group of plasmid carrying blaCTX-M-14 gene could not be determined. The blaCTX-M-14 gene was flanked upstream by an ISEcp1 insertion sequence and downstream by an IS903 element. This work shows that CTX-M-14 is present in K. pneumoniae isolates from chickens in China. The blaCTX-M-14 gene was associated with an upstream ISEcp1 insertion sequence. Our results underline the need for continuous surveillance of the prevalence and evolution of this CTX-M-type b-lactamase in China.
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Assimilation of Remote Sensing and Crop Model for LAI Estimation Based on Ensemble Kalman Filter
LI Rui, LI Cun-jun, DONG Ying-ying, LIU Feng, WANG Ji-hua, YANG Xiao-dong , PAN Yu-chun
2011, 10 (10): 1595-1602.   DOI: 10.1016/S1671-2927(11)60156-9
Abstract1915)      PDF in ScienceDirect      
Data assimilation in agricultural remote sensing research is of great significance to integrate with remote sensing observations and model simulations for parameters estimation. The present investigation not only designed and realized the Ensemble Kalman Filtering algorithm (EnKF) assimilation by combing the crop growth model (CERES-Wheat) with remote sensing data, but also optimized and updated the key parameters (LAI) of winter wheat by using remote sensing data. Results showed that the assimilation LAI and the observation ones agreed with each other, and the R2 reached 0.8315. So assimilation remote sensing and crop model could provide reference data for the agricultural production.
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The N-mannosyltransferase MoAlg9 plays important roles in the development and pathogenicity of Magnaporthe oryzae
ZHANG Shu-lin, WANG Yu, HU Jin-mei, CUI Xin-yue, KANG Xiao-ru, ZHAO Wei, PAN Yue-min
DOI: 10.1016/j.jia.2023.10.027 Online: 23 October 2023
Abstract51)      PDF in ScienceDirect      

Magnaporthe oryzae is the causal agent of rice blast. Glycosylation plays key roles in vegetative growth, development, and infection of M. oryzae. However, several glycosylation-related genes have not been characterized. In this study, we identified a Glyco_transf_22 domain-containing protein, MoAlg9, and found that MoAlg9 is localized to the endoplasmic reticulum (ER). Deletion of MoALG9 significantly affected conidial production, normal appressorium formation, responses to stressors, and pathogenicity of M. oryzae. We also found that the ΔMoalg9 mutant was defective in glycogen utilization, appressorial penetration, and invasive growth in host cells. Moreover, we further demonstrated that MoALG9 regulates the transcription of several target genes involved in conidiation, appressorium formation, and cell-wall integrity. In addition, we found that the Glyco_transf_22 domain is essential for normal MoAlg9 function and localization. We also provide evidence that MoAlg9 is involved in N-glycosylation pathway in M. oryzae. Taken together, these results show that MoAlg9 is important for conidiation, appressorium formation, maintenance of cell wall integrity, and the pathogenesis of M. oryzae.

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