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SUPER WOMAN 2 (SPW2) maintains organ identity in spikelets by inhibiting the expression of floral homeotic genes OsMADS3, OsMADS58, OsMADS13, and DROOPING LEAF
ZHUANG Hui, LAN Jin-song, YANG Qiu-ni, ZHAO Xiao-yu, LI Yu-huan, ZHI Jing-ya, SHEN Ya-lin, HE Guang-hua, LI Yun-feng
2024, 23 (1): 59-76.   DOI: 10.1016/j.jia.2023.07.010
Abstract292)      PDF in ScienceDirect      

Flower organ identity in rice is mainly determined by the A-, B-, C- and E-class genes, with the majority encoding MADS-box transcription factors.  However, few studies have investigated how the expression of these floral organ identity genes is regulated during flower development.  In this study, we identified a gene named SUPER WOMAN 2 (SPW2), which is necessary for spikelet/floret development in rice by participating in the regulation of the expression of pistil identity genes such as OsMADS3, OsMADS13, OsMADS58 and DL.  In the spw2 mutant, ectopic stigma/ovary-like tissues were observed in the non-pistil organs, including sterile lemma, lemma, palea, lodicule, and stamen, suggesting that the identities of these organs were severely affected by mutations in SPW2SPW2 was shown to encode a plant-specific EMF1-like protein that is involved in H3K27me3 modification as an important component of the PRC2 complex.  Expression analysis showed that the SPW2 mutation led to the ectopic expression of OsMADS3, OsMADS13, OsMADS58, and DL in non-pistil organs of the spikelet.  The ChIP-qPCR results showed significant reductions in the levels of H3K27me3 modification on the chromatin of these genes.  Thus, we demonstrated that SPW2 can mediate the process of H3K27me3 modification of pistil-related genes to regulate their expression in non-pistil organs of spikelets in rice.  The results of this study expand our understanding of the molecular mechanism by which SPW2 regulates floral organ identity genes through epigenetic regulation.

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Genome-wide association study for numbers of vertebrae in Dezhou donkey population reveals new candidate genes
SUN Yan, LI Yu-hua, ZHAO Chang-heng, TENG Jun, WANG Yong-hui , WANG Tian-qi, SHI Xiao-yuan, LIU Zi-wen, LI Hai-jing, WANG Ji-jing, WANG Wen-wen, NING Chao, WANG Chang-fa, ZHANG Qin
2023, 22 (10): 3159-3169.   DOI: 10.1016/j.jia.2023.04.038
Abstract289)      PDF in ScienceDirect      

Numbers of vertebrae is an important economic trait associated with body size and meat productivity in animals.  However, the genetic basis of vertebrae number in donkey remains to be well understood.  The aim of this study was to identify candidate genes affecting the number of thoracic (TVn) and the number of lumbar vertebrae (LVn) in Dezhou donkey.  A genome-wide association study was conducted using whole genome sequence data imputed from low-coverage genome sequencing.  For TVn, we identified 38 genome-wide significant and 64 suggestive SNPs, which relate to 7 genes (NLGN1, DCC, SLC26A7, TOX, WNT7A, LOC123286078, and LOC123280142).  For LVn, we identified 9 genome-wide significant and 38 suggestive SNPs, which relate to 8 genes (GABBR2, FBXO4, LOC123277146, LOC123277359, BMP7, B3GAT1, EML2, and LRP5).  The genes involve in the Wnt and TGF-β signaling pathways and may play an important role in embryonic development or bone formation and could be good candidate genes for TVn and LVn.

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Effects of subsoiling depth, period interval and combined tillage practice on soil properties and yield in the Huang-Huai-Hai Plain, China
WANG Yun-xia, CHEN Shu-ping, ZHANG Dong-xing, YANG Li, CUI Tao, JING Hui-rong, LI Yu-huan
2020, 19 (6): 1596-1608.   DOI: 10.1016/S2095-3119(19)62681-X
Abstract160)      PDF in ScienceDirect      
Compaction layers are widely distributed in the Huang-Huai-Hai Plain, China, which restrict root growth and reduce yields.  The adoption of subsoiling has been recommended to disrupt compacted soil layers and create a reasonable soil structure for crop development.  In this paper, the effects of subsoiling depth (30, 35 and 40 cm), period interval (2 or 3 years) and combined pre-sowing tillage practice (rotary cultivation or ploughing) on soil condition improvement was studied on a tidal soil in the Huang-Huai-Hai Plain.  Seven tillage patterns were designed by combining different subsoiling depths, period intervals and pre-sowing.  The evaluation indicators for soil condition improvement were as follows: thickness of the plough layer and hard pan, soil bulk density, cone index, soil three-phase R values, alkali nitrogen content, crop yield, and economic benefits.  The results showed that subsoiling can significantly improve the soil structure and physical properties.  In all subsoiling treatments, the depth of 35 or 40 cm at a 2-year interval was the most significant.  The thickness of the plough layer increased from 13.67 cm before the test to 21.54–23.45 cm in 2018.  The thickness of the hard pan decreased from 17.68 cm before the test to 12.09–12.76 cm in 2018, a decrease of about 40.07%.  However, the subsoiling combined pre-sowing tillage practice, that is, rotary cultivation or ploughing, was not significant for soil structure and physical properties.  For all subsoiling treatments, the soil bulk density, cone index and soil three-phase R values of the 15–25 cm soil layer were significantly lower compared to single rotary cultivation.  Subsoiling was observed to increase the soil alkaline nitrogen and water contents.  The tillage patterns that had subsoiling at the depth of 35–40 cm at a 2-year interval combined with rotary cultivation had the highest alkali nitrogen and water contents, which increased by 31.08–34.23% compared with that of the single rotary cultivation.  Subsoiling can significantly increase the yield both of wheat and corn, as well as the economic benefits.  The treatment of subsoiling at the depth of 35 cm at an interval of 2 years combined with rotary cultivation had the highest annual yield and economic benefits.  For this treatment, the annual yield and economic benefits increased by 14.55 and 62.87% in 2018, respectively.  In conclusion, the tillage patterns that involved subsoiling at a depth of 35 cm at a 2-year interval along with rotary cultivation are suitable for the Huang-Huai-Hai Plain.
 
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