Understanding the composition and contents of carotenoids in various soybean seed accessions is important for their nutritional assessment.  This study investigated the variability in the concentrations of carotenoids and chlorophylls and revealed their associations with other nutritional quality traits in a genetically diverse set of Chinese soybean accessions comprised of cultivars and landraces.  Genotype, planting year, accession type, seed cotyledon color, and ecoregion of origin significantly influenced the accumulation of carotenoids and chlorophylls.  The mean total carotenoid content was in the range of 8.15–14.72 µg g^–1 across the ecoregions.  The total carotenoid content was 1.2-fold higher in the landraces than in the cultivars.  Soybeans with green cotyledons had higher contents of carotenoids and chlorophylls than those with yellow cotyledons.  Remarkably, lutein was the most abundant carotenoid in all the germplasms, ranging from 1.35–37.44 µg g^–1.  Carotenoids and chlorophylls showed significant correlations with other quality traits, which will help to set breeding strategies for enhancing soybean carotenoids without affecting the other components.  Collectively, our results demonstrate that carotenoids are adequately accumulated in soybean seeds, however, they are strongly influenced by genetic factors, accession type, and germplasm origin.  We identified novel germplasms with the highest total carotenoid contents across the various ecoregions of China that could serve as the genetic materials for soybean carotenoid breeding programs, and thereby as the raw materials for food sectors, pharmaceuticals, and the cosmetic industry.

Methane (CH₄) emissions from ruminant production are a significant source of anthropogenic greenhouse gas production, but few studies have examined the enteric CH₄ emissions of lactating dairy cows under different feeding regimes in China.  This study aimed to investigate the influence of different dietary neutral detergent fiber/non-fibrous carbohydrate (NDF/NFC) ratios on production performance, nutrient digestibility, and CH₄ emissions for Holstein dairy cows at various stages of lactation. It evaluated the performance of CH₄ prediction equations developed using local dietary and milk production variables compared to previously published prediction equations developed in other production regimes.  For this purpose, 36 lactating cows were assigned to one of three treatments with differing dietary NDF/NFC ratios: low (NDF/NFC=1.19), medium (NDF/NFC=1.54), and high (NDF/NFC=1.68).  A modified acid-insoluble ash method was used to determine nutrient digestibility, while the sulfur hexafluoride technique was used to measure enteric CH₄ emissions.  The results showed that the dry matter (DM) intake of cows at the early, middle, and late stages of lactation decreased significantly (P<0.01) from 20.9 to 15.4 kg d^–1, 15.3 to 11.6 kg d^–1, and 16.4 to 15.0 kg d^–1, respectively, as dietary NDF/NFC ratios increased.  Across all three treatments, DM and gross energy (GE) digestibility values were the highest (P<0.05) for cows at the middle and late lactation stages.  Daily CH₄ emissions increased linearly (P<0.05), from 325.2 to 391.9 kg d^–1, 261.0 to 399.8 kg d^–1, and 241.8 to 390.6 kg d^–1, respectively, as dietary NDF/NFC ratios increased during the early, middle, and late stages of lactation.  CH₄ emissions expressed per unit of metabolic body weight, DM intake, NDF intake, or fat-corrected milk yield increased with increasing dietary NDF/NFC ratios.  In addition, CH₄ emissions expressed per unit of GE intake increased significantly (P<0.05), from 4.87 to 8.12%, 5.16 to 9.25%, and 5.06 to 8.17% respectively, as dietary NDF/NFC ratios increased during the early, middle, and late lactation stages.  The modelling results showed that the equation using DM intake as the single variable yielded a greater R2 than equations using other dietary or milk production variables.  When data obtained from each lactation stage were combined, DM intake remained a better predictor of CH₄ emissions (R²=0.786, P=0.026) than any other variables tested.  Compared to the prediction equations developed herein, previously published equations had a greater root mean square prediction error, reflecting their inability to predict CH₄ emissions for Chinese Holstein dairy cows accurately.  The quantification of CH₄ production by lactating dairy cows under Chinese production systems and the development of associated prediction equations will help  establish regional or national CH₄ inventories and improve mitigation approaches to dairy production.

The red flour beetle, Tribolium castaneum, is a major agriculture pest of stored grain, cereal products and peanuts for human consumption.  It is reported that heat shock protein 18.3 of T. castaneum (Tchsp18.3) plays a significant role in stress resistance, development and reproduction.  However, the regulatory systems of Tchsp18.3 remain unknown.  Therefore, we compared the global transcriptome profiles of RNA interference (RNAi)-treated larvae (ds-Tchsp18.3) and control larvae of T. castaneum using RNA sequencing.  Overall, we obtained 14 154 435 sequence reads aligned with 13 299 genes.  Additionally, 569 differentially expressed genes (DEGs) were identified from the ds-Tchsp18.3 and control groups, of which 246 DEGs were annotated in the 47 Gene Ontology (GO) functional groups and 282 DEGs were assigned to 147 Kyoto Encyclopedia of Genes and Genomes (KEGG) biological signaling pathways.  The DEGs encoding viperin, dorsal, Hdd11, PGRP2, defensin1 and defensin2 were simultaneously related to immunity and stress responses, which suggests that cross-talk might exist between the immunity and stress responses of T. castaneum.  The knockdown of Tchsp18.3gene expression suppressed the antioxidant activity process, which most likely modulated the effects of Tchsp18.3 on development and reproduction.  Furthermore, the DEGs, including Blimp-1, Gld, Drm, Kinesin-14, Pthr2, Delta(11)-like and EGF-like domain protein 2, were also associated with the development and reproduction of ds-Tchsp18.3 insects.  Additionally, knockdown of Tchsp18.3 amplified the serine protease (SP) signaling pathway to further regulate stress responses and innate immunity as well as development and reproduction of the red flour beetles.  These results provide valuable insight into the molecular regulatory mechanism of Tchsp18.3 involved in insect physiology and further facilitate the research of suitable and sustainable management for pest control.

The effects of antibacterial compounds produced by Saccharomyces cerevisiae in Koumiss on pathogenic Escherichia coli O₈ and its cell surface characteristics were investigated.  S. cerevisiae isolated from Koumiss produced antibacterial compounds which were active against pathogenic E. coli O₈ as determined by the Oxford cup method.  The aqueous phases from S. cerevisiae at pH=2.0 (S2) and pH=8.0 (S8) were extracted and tested, respectively.  The organic acids of S2 and S8 were determined by high performance liquid chromatography (HPLC), and the concentrations of killer toxins were determined by enhanced bicinchoninic acid (BCA) Protein Assay Kit.  The minimum inhibition concentration (MIC) and the minimum bactericidal concentration (MBC) of S2 and S8 on E. coli O₈ were determined by the broth microdilution method.  The effects of S2 and S8 on the growth curve of E. coli O₈ were determined by turbidimetry, and the hydrophobicities of E. coli O₈ cell surface were determined using the microbial adhesion to solvents method, the permeation of E. coli O₈ cell membrane were determined by the o-nitrophenyl-β-D-galactoside (ONPG) method.  Aqueous phases at pH 2.0 and 8.0 had larger inhibition zones and then S2 and S8 were obtained by freeze-drying.  The main component in S2 was citric acid and it was propanoic acid in S8.  Other organic acids and killer toxins were also present.  Both the MICs of S2 and S8 on E. coli O₈ were 0.025 g mL^–1, the MBCs were 0.100 and 0.200 g mL^–1, respectively.  The normal growth curve of E. coli O₈ was S-shaped, however, it changed after addition of S2 and S8.  E. coli O₈ was the basic character, and had a relatively hydrophilic surface.  The hydrophobicity of E. coli O₈ cell surface and the permeation of E. coli O₈ cell membrane were increased after adding S2 and S8.  The present study showed that S2 and S8 inhibit the growth of pathogenic E. coli O₈ and influence its cell surface characteristics.

Wheat (Triticum aestivum L.) often experiences photoinhibition due to strong light during the grain filling stage. As such, increasing the tolerance of wheat to photoinhibition is very desirable in breeding efforts focused on increasing grain yields. Previous reports have suggested that PROTON GRADIENT REGULATION 5 (PGR5) plays a central role in the generation of a proton gradient across the thylakoid membrane (DpH) and in acclimation to high light intensity conditions. Three PGR5 homoeologues were isolated from wheat, and mapped onto chromosomes 7A, 7B and 7D, respectively. The TaPGR5s shared highly similar genomic sequences and gene structures. The transcripts of TaPGR5s were found to be abundantly expressed in the flag leaves, and were transiently up-regulated by treatment with high light. High light treatment inhibited the net photosynthetic rate (Pn) and the maximal quantum yield of photosystem II (Fv/Fm). Further, these inhibitions were more evident in the leaves with reduced expression of TaPGR5s achieved using virus-induced gene silencing methods. Moreover, reducing TaPGR5 expression impaired the induction of non-photochemical quenching (NPQ), which caused more severe cell membrane damage and lipid peroxidation in high light. Additionally, we observed that TaPGR5s transcripts were more abundantly expressed in the wheat genotypes with higher ms-delayed light emission (ms-DLE), a value reflecting transthylakoid DpH. These results suggested that TaPGR5s play important roles in the tolerance of wheat to photoinhibition.

Soybean cyst nematode (SCN) is one of the most devastating pathogen for soybean. Therefore, identification of resistant germplasm resources and resistant genes is needed to improve SCN resistance for soybean. Soybean varieties Huipizhiheidou and Wuzhaiheidou were distributed in China and exhibited broad spectrums of resistance to various SCN races. In this study, these two resistant varieties, combined with standard susceptible varieties (Lee and Essex), were utilized to identify the differentially expressed transcripts after infection with SCN race 4 between resistant and susceptible reactions by using the Affymetrix Soybean Genome GeneChip. Comparative analyses indicated that 21 common genes changed significantly in the resistant group, of which 16 increased and 5 decreased. However, 12 common genes changed significantly in the susceptible group, of which 9 increased and 3 decreased. Additionally, 27 genes were found in common between resistant and susceptible reactions. The 21 significantly changed genes in resistant reaction were associated with disease and defense, cell structure, transcription, metabolism, and signal transduction. The fold induction of 4 from the 21 genes was confirmed by quantitative RT-PCR (qRTPCR) analysis. Moreover, the gene ontology (GO) enrichment analyses demonstrated the serine family amino acid metabolic process and arginine metabolic process may play important roles in SCN resistance. This study provided a new insight on the genetic basis of soybean resistance to SCN race 4, and the identified resistant or resistant-related genes are potentially useful for SCN-resistance breeding in soybean.

Horizontal gene transfer (HGT) plays key roles in the evolution of pathogenetic bacteria, especially in pathogenetic associated genes. In this study, the evolutionary dynamics of Xanthomonas at species level were determined by the comparative analysis of the complete genomes of 15 Xanthomonas strains. A concatenated multiprotein phyletic pattern and a dataset with Xanthomonas clusters of orthologous genes were constructed. Mathematical extrapolation estimates that the core genome will reach a minimum of about 1 547 genes while the pan-genome will increase up to 22 624 genes when sequencing 1 000 genomes. The HGT extent in this genus was assessed by using a Markov-based probabilistic method. The reconstructed gene gain/loss history, which contained several features consistent with biological observations, showed that nearly 60% of the Xanthomonas genes were acquired by HGT. A large fraction of variability was in the clade ancestor nodes and “leaves of the tree”. Coexpression analysis suggested that the pathogenic and metabolic variation between Xanthomonas oryzae pv. oryzicola and Xanthomonas oryzae pv. oryzae might due to recently-transferred genes. Our results strongly supported that the gene gain/loss may play an important role in divergence and pathogenicity variation of Xanthomonas species.