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Identification of eight Berberis species from the Yunnan-Guizhou plateau as aecial hosts for Puccinia striiformis f. sp. tritici, the wheat stripe rust pathogen
LI Si-nan, CHEN Wen, MA Xin-yao, TIAN Xia-xia, LIU Yao, HUANG Li-li, KANG Zhen-sheng, ZHAO Jie
2021, 20 (6): 1563-1569.   DOI: 10.1016/S2095-3119(20)63327-5
Abstract145)      PDF in ScienceDirect      
Puccinia striiformis Westend. f. sp. tritici Erikss. (Pst) infects wheat and causes stripe rust.  The rust is heteroecious with wheat as the primary uredinial and telial host and barberry (Berberis spp.) as the alternate pycnial and aecial host.  More than 40 Berberis species have been identified as alternate hosts for Pst, and most of these are Chinese Berberis species.  However, little is known about Berberis species or their geographic distributions in the Yunnan-Guizhou plateau in southwestern China.  The Yunnan-Guizhou plateau is considered to be an important and relatively independent region for the evolution of the wheat stripe rust pathogen in China because the entire disease cycle can be completed within the region.  In this study, we conducted a survey of barberry plants in the Yunnan-Guizhou plateau and identified the eight Pst-susceptible Berberis species under controlled conditions, including B. julianae, B. tsienii, B. veitchii, B. wilsonae, B. wilsonae var. guhtzunica, B. franchetiana, B. lepidifolia and B. pruinosa.  These species are reported here for the first time to serve as alternate hosts for the wheat stripe rust pathogen under controlled conditions. 
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Identification of three Berberis species as potential alternate hosts for Puccinia striiformis f. sp. tritici in wheat-growing regions of Xinjiang, China
ZHUANG Hua, ZHAO Jing, HUANG Li-li, KANG Zhen-sheng, ZHAO Jie
2019, 18 (12): 2786-2792.   DOI: 10.1016/S2095-3119(19)62709-7
Abstract159)      PDF in ScienceDirect      
Since the recent discovery of barberry (Berberis spp.) as an alternate host for the stripe rust pathogen Puccinia striiformis, many Chinese Berberis species have been identified as alternate hosts for P. striiformis f. sp. tritici.  However, little is known about Berberis species and their distribution in wheat-growing regions in Xinjiang, China, where stripe rust is endemic.  As the largest province or autonomous region, Xinjiang represents a relatively independent epidemic region for wheat stripe rust in China.  In this study, we conducted a survey of barberry plants in the main wheat-growing areas of Xinjiang.  We identified three Berberis species, B. heteropoda, B. nummularia and B. kaschgarica, and confirmed their roles as potential alternate hosts for P. striiformis f. sp. tritici in the laboratory. 
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Comparative analysis of protein kinases and associated domains between Ascomycota and Basidiomycota
PEI Guo-liang, GUO Jun, WANG Qin-hu, KANG Zhen-sheng
2019, 18 (1): 96-107.   DOI: 10.1016/S2095-3119(18)62022-2
Abstract263)      PDF (1842KB)(375)      
Protein kinases play an important role in every aspect of cellular life.  In this study, we systemically identified protein kinases from the predicted proteomes of 59 representative fungi from Ascomycota and Basidiomycota.  Comparative analysis revealed that fungi from Ascomycota and Basidiomycota differed in the number and variety of protein kinases.  Some groups of protein kinases, such as calmodulin/calcium regulated kinases (CMGC) and those with the highest group percentages are the most prevalent protein kinases among all fungal species tested.  In contrast, the STE group (homologs of the yeast STE7, STE11 and STE20 genes), was more abundant in Basidiomycetes than in Ascomycetes.  Importantly, the distribution of some protein kinase families appeared to be subphylum-specific.  The tyrosine kinase-like (TKL) group had a higher protein kinase density in Agaricomycotina fungi.  In addition, the distribution of accessory domains, which could have functional implications, demonstrated that usage bias varied between the two phyla.  Principal component analysis revealed a divergence between the main functional domains and associated domains in fungi.  This study provides novel insights into the variety and expansion of fungal protein kinases between Ascomycota and Basidiomycota.
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Editorial- Response and resistance of cereal crops to pathogens
KANG Zhen-sheng
2018, 17 (11): 2467-2467.   DOI: 10.1016/S2095-3119(18)62106-9
Abstract317)      PDF in ScienceDirect      
The special topic of the two papers is the systemic acquired resistance (SAR) and pathogenesis-related protein genes (PR).  SAR is an enhanced resistance against further potential parasite beyond the initial infection site, which can be induced by either pathogen infection or exogenous inducer, including synthetic chemicals and natural products.  As a “whole-plant” resistance defense, SAR confers broad-spectrum immunity to widely diverse pathogenic microorganisms, such as viruses, bacteria and fungi for a relatively long lasting period.  Convincingly, it is a promising way to prevent crop diseases by activating the plants’ own natural defenses via application of chemical inducers or creating resistant wheat cultivars.  

The first article from Wang et al. (2018) reviewed SAR in wheat and barley, the possible involvement of the master regulator Non-expresser of PR genes 1 (NPR1) and PR genes in the SAR processes.  The author summarized to our current knowledge of the three different types of SAR-like responses in wheat and barley in comparison to Arabidopsis and rice.  Research updates on the wheat and barley NPR1 homologs in SAR, downstream genes of SAR, including PR genes and BTH-induced genes were highlighted, which provided initial clue for understanding the SAR mechanism in these two plant species.  The review is informative in the research advances of SAR in wheat and barley, which would help the readers to obtain an overall understanding of SAR in the resistance of wheat and barley to different pathogens.  

The second article from Farrakh et al. (2018) investigated the roles of different PR protein genes in race-specific resistance and non-race specific high-temperature adult-plant (HTAP) resistance of wheat to wheat stripe rust fungus by profiling the expression of eight different PR genes.  The authors elucidated that different PR genes are involved in different types of resistance and resistance controlled by different Yr genes, owing to the varied expression level of PR genes at different stages of infection and among different Yr gene lines.  The research provides useful and needed information of the function of PR genes in wheat all-stage resistance and HTAP, which greatly improves the understanding of the molecular mechanism underlying race specificity and durability of stripe rust resistance.   

At the molecular level, the findings of the papers deepen our knowledge on the response of crop plant to pathogen invasion.  More importantly, the information obtained give clues for improving plant resistance in novel ways.  I genuinely believe that the findings will inspire the readers of the Journal of Integrative Agriculture for developing future research on the given topics.
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Molecular Evidence of the West-to-East Dispersal of Puccinia striiformis f. sp. tritici in Central Shaanxi and the Migration of the Inoculum from Gansu
LIU Wei, HUANG Xue-ling, JU Meng, SUN Mu-di, DU Zhi-min, KANG Zhen-sheng, ZHAO Jie
DOI: 10.1016/j.jia.2023.10.026 Online: 23 October 2023
Abstract29)      PDF in ScienceDirect      

Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is an airborne disease. In China, it frequently develops initially in central Shaanxi and southwestern Gansu, and from there, inoculum spreads to the eastern wheat production regions. Field investigations have suggested that Pst could spread from the west to the east within central Shaanxi and that Gansu could serve as the inoculum source for central Shaanxi, but there is no direct evidence for this hypothetical dispersal route. In the current study, 321 Pst isolates collected from central Shaanxi and Gansu in the 2019-2020 and 2020-2021 winter wheat cropping seasons were genotyped using 23 pairs of KASP-SNP markers. The dispersion among subpopulations was analyzed using several approaches, and overall, the populations were found to exhibit high levels of genetic diversity. There was little genetic divergence (0.05 > Fst > 0) within central Shaanxi. However, significant gene flow (Nm > 4) driven by wind-oriented dispersal from west (Baoji) to east (Weinan) occurred. There was also gene flow among the 4 Gansu subpopulations of Tianshui, Longnan, Pingliang, and Qingyang. Migration of the pathogen occurred between central Shaanxi and Gansu. Migration from Gansu to central Shaanxi was major compared with that from central Shaanxi to Gansu that was minor. Genetic variation occurred among isolates, instead of among subpopulations and within isolates. Linkage disequilibrium revealed that there was strong genetic recombination in the subpopulations from Gansu and central Shaanxi. Therefore, the present study provides molecular evidence that Pst spread from west to east in central Shaanxi and showed that Gansu (especially Longnan and Tianshui) was one of the major origins of the pathogen inoculum of wheat stripe rust in central Shaanxi. The results revealed the west-to-east transmission route of wheat stripe rust in central Shaanxi, being used to guide integrated management of the disease. 

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