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Small auxin-up RNA gene OsSAUR33 promotes seed aging tolerance in rice
Shan Sun, Wenjun Li, Yanfen Fang, Qianqian Huang, Zhibo Huang, Chengjing Wang, Jia Zhao, Yongqi He, Zhoufei Wang
2025, 24 (1): 61-71.   DOI: 10.1016/j.jia.2023.07.024
Abstract88)      PDF in ScienceDirect      

Seed aging tolerance during storage is generally an important trait for crop production, yet the role of small auxin-up RNA genes in conferring seed aging tolerance is largely unknown in rice.  In this study, one small auxin-up RNA gene, OsSAUR33, was found to be involved in the regulation of seed aging tolerance in rice.  The expression of OsSAUR33 was significantly induced in aged seeds compared with unaged seeds during the seed germination phase.  Accordingly, the disruption of OsSAUR33 significantly reduced seed vigor compared to the wild type (WT) in response to natural storage or artificial aging treatments.  The rice OsSAUR33 gene promotes the vigor of aged seeds by enhancing their reactive oxygen species (ROS) level during seed germination, and the accumulation of ROS was significantly delayed in the aged seeds of Ossaur33 mutants in comparison with WT during seed germination.  Hydrogen peroxide (H2O2) treatments promoted the vigor of aged seeds in various rice varieties.  Our results provide timely theoretical and technical insights for the trait improvement of seed aging tolerance in rice.

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A unique role of the pyrimidine de novo synthesis enzyme ODCase in Lysobacter enzymogenes
Mingming Yang, Yunxiao Tan, Jiabing Ma, Yingjia Zhao, Xia Yan, Nana Wang, Pingping Wang, Jiaqi Tan, Suilong Ai, Xiaofei Liang, Bangshuai Chang, Obadah E. A. Yousif, Chao Zhao, Bo Wang, Guoliang Qian, Lili Huang
2024, 23 (9): 3066-3077.   DOI: 10.1016/j.jia.2023.11.047
Abstract98)      PDF in ScienceDirect      
Bacterial species of the genus Lysobacter are environmentally ubiquitous with strong antifungal biocontrol potential.  Heat-stable antifungal factor (HSAF) secreted by the biocontrol bacterium Lysobacter enzymogenes OH11 has broad-spectrum and highly efficient antifungal activity.  Studying the biosynthetic regulations of HSAF would lay an important foundation for strain engineering toward improved HSAF production.  In this work, we demonstrate that Le0752, an orotidine-5´-phosphate decarboxylase enzyme (ODCase) catalyzing a pivotal step of the UMP de novo biosynthesis pathway, is vital for HSAF-mediated antimicrobial activities and growth of Lenzymogenes OH11, but not for twitching motility.  This gene regulates the production of HSAF by affecting the expression of lafB, a key gene in the HSAF biosynthesis operon, through the transcription factor Clp.  Interestingly, bioinformatics analysis revealed that Le0752 belongs to the Group III ODCases, whereas its homologs in the closely related genera Xanthomonas and Stenotrophomonas belong to Group I, which contains most ODCases from Gram-positive bacteria, Gram-negative bacteria and cyanobacteria.  Moreover, the Group I ODCase PXO_3614 from the Xanthomonas oryzae pv.  oryzae PXO99A strain complemented the Le0752 mutant in regulating HSAF-mediated antagonistic activity.  Together, these results highlight the important requirement of de novo pyrimidine biosynthetic enzymes for antibiotic HSAF production in Lenzymogenes, which lays an important foundation for improving HSAF production via metabolic flow design and for dissecting the regulatory functions of bacterial ODCases.
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Natural variation in the cytochrome c oxidase subunit 5B OsCOX5B regulates seed vigor by altering energy production in rice
Chengwei Huang, Zhijuan Ji, Qianqian Huang, Liling Peng, Wenwen Li, Dandan Wang, Zepeng Wu, Jia Zhao, Yongqi He, Zhoufei Wang
2024, 23 (9): 2898-2910.   DOI: 10.1016/j.jia.2023.06.018
Abstract210)      PDF in ScienceDirect      
Seed vigor is a crucial trait for the direct seeding of rice.  Here we examined the genetic regulation of seed vigor traits in rice, including germination index (GI) and germination potential (GP), using a genome-wide association study approach.  One major quantitative trait locus, qGI6/qGP6, was identified simultaneously for both GI and GP.  The candidate gene encoding the cytochrome c oxidase subunit 5B (OsCOX5B) was validated for qGI6/qGP6.  The disruption of OsCOX5B caused the vigor traits to be significantly lower in Oscox5b mutants than in the japonica Nipponbare wild type (WT).  Gene co-expression analysis revealed that OsCOX5B influences seed vigor mainly by modulating the tricarboxylic acid cycle process.  The glucose levels were significantly higher while the pyruvic acid and adenosine triphosphate levels were significantly lower in Oscox5b mutants than in WT during seed germination.  The elite haplotype of OsCOX5B facilitates seed vigor by increasing its expression during seed germination.  Thus, we propose that OsCOX5B is a potential target for the breeding of rice varieties with enhanced seed vigor for direct seeding.


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Structural chromosome variations from Jinmai 47 and Jinmai 84 affected agronomic traits and drought tolerance of wheat
Shuwei Zhang, Jiajia Zhao, Haiyan Zhang, Duoduo Fu, Ling Qiao, Bangbang Wu, Xiaohua Li, Yuqiong Hao, Xingwei Zheng, Zhen Liang, Zhijian Chang, Jun Zheng
DOI: 10.1016/j.jia.2024.07.047 Online: 02 August 2024
Abstract48)      PDF in ScienceDirect      

Structural variation is an important source of genetic variation in wheat and have been important in the evolution of the wheat’s genome. Few studies have examined the relationship between structural variations and agronomy and drought tolerance. The present study identified structural chromosome variations (SCVs) in a doubled haploid (DH) population and backcross introgression lines (BC5F3) derived from Jinmai 47 and Jinmai 84 using fluorescence in situ hybridization.  There are one simple translocation, 10 present/absent variations (PAVs), and one copy number variation (CNV) between Jinmai 47 and Jinmai 84, which distributed in 10 chromosomes.  Eight SCVs were associated with 15 agronomic traits. A PAV recombination occurred on chromosome 2A, which was associated with grain number per spike (GNS). The 1BL/1RS translocation and PAV.2D were associated with significant reductions in plant height, deriving from the effects on LI2-LI4 and UI, LI2-LI4, respectively.  PAV.2D was also contributed to an increase of 3.13% for GNS, 1BL/1RS significantly increased spikelet number, grain length (GL), and grain thickness (GT). The effect of PAV.4A.1 on GL, PAV.6A on spike length (SL) and thousand-grain weight (TGW), PAV.6B on SL, GT and TGW were identified and verified. PAVs on chromosomes 2A, 6A, 1D, 2D, and a CNV on chromosome 4B were associated with the drought tolerance coefficients.  Additive and interaction effects among SCVs were observed. Many previously cloned key genes and yield-related QTL were found in polymorphic regions of PAV.2B, PAV.2D, and CNV.4B.  Altogether, this study confirmed the genetic effect of SCVs on agronomy and drought tolerance, and identification of these SCVs will facilitate genetic improvement of wheat through marker-assisted selection.

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