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Effects of different molecular weights of chitosan on methane production and bacterial community structure
in vitro
TONG Jin-jin, ZHANG Hua, WANG Jia, LIU Yun, MAO Sheng-yong, XIONG Ben-hai, JIANG Lin-shu
2020, 19 (
6
): 1644-1655. DOI:
10.1016/S2095-3119(20)63174-4
Abstract
(
89
)
PDF in ScienceDirect
As a new feed additive, chitosan has been shown in recent years to have a certain role in reducing methane emissions from the gastrointestinal tracts of ruminants. However, the effects of chitosan with different molecular weights on rumen fermentation, methane production and bacterial community structure are not yet clear. A basal diet without chitosan served as the control (CTL), and the treatment diets were supplemented with chitosan with different molecular weights: 1 000 (1K), 3 000 (3K), 5 000 (5K), 50 000 (5W) and 200 000 (20W) dry matter (DM). Six fermentation units per treatment were established. Gas chromatography was used to measure the concentrations of methane, H
2
and volatile fatty acids (VFAs). The bacterial 16S rRNA genes were sequenced with an Illumina MiSeq platform and analysed to reveal the relative abundances of bacterial community taxa. The results showed that the propionate proportion was significantly increased by the addition of chitosan with different molecular weights (
P
<0.05), while methane production and the acetate proportion were significantly decreased (
P
<0.05). The relative abundances of
Rikenellaceae_RC9_gut_group
and
Prevotellaceae_UCG_003
were significantly increased in the 3K chitosan group compared with the CTL group, whereas the relative abundance of
Ruminococcaceae_NK4A214_group
was significantly decreased (
P
<0.05). Correlation analyses of the relative abundances of the bacterial genera showed that Prevotella was positively related to propionate production (
P
<0.05). In conclusion, 3K chitosan could reduce methane production by replacing fibrolytic bacteria (
Firmicutes
and
Fibrobacteres
) with amylolytic bacteria (
Bacteroidetes
and
Proteobacteria
) in the bacterial community structure.
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OsHemA
gene, encoding glutamyl-tRNA reductase (GluTR) is essential for chlorophyll biosynthesis in rice (
Oryza sativa
)
ZENG Zhao-qiong, LIN Tian-zi, ZHAO Jie-yu, ZHENG Tian-hui, XU Le-feng, WANG Yi-hua, LIU Ling-long, JIANG Ling, CHEN Sai-hua, WAN Jian-min
2020, 19 (
3
): 612-623. DOI:
10.1016/S2095-3119(19)62710-3
Abstract
(
142
)
PDF in ScienceDirect
Chlorophyll (Chl) biosynthesis is essential for photosynthesis and plant growth. Glutamyl-tRNA reductase (GluTR) catalyzes glutamyl-tRNA into glutamate-1-semialdehyde (GSA) and initiates the chlorophyll biosynthesis. Even though the main role of GluTR has been established, the effects caused by natural variations in its corresponding gene remain largely unknown. Here, we characterized a spontaneous mutant in paddy field with Chl biosynthesis deficiency, designated as
cbd1
. With intact thylakoid lamellar structure, the
cbd1
plant showed light green leaves and reduced Chl and carotenoids (Cars) content significantly compared to the wild type. By map-based gene cloning, the mutation was restricted within a 57-kb region on chromosome 10, in which an mPingA miniature inverted-repeat transposable element (MITE) inserted in the promoter region of
OsHemA
gene. Both leaf color and the pigment contents in
cbd1
were recovered in a complementation test, confirming
OsHemA
was responsible for the mutant phenotype.
OsHemA
was uniquely predicted to encode GluTR and its expression level was dramatically repressed in
cbd1
. Transient transformation in protoplasts demonstrated that GluTR localized in chloroplasts and a signal peptide exists in its N-terminus. A majority of Chl biosynthesis genes, except for POR and CHLG, were down-regulated synchronously by the repression of OsHemA, suggesting that an attenuation occurred in the Chl biosynthesis pathway. Interestingly, we found major agronomic traits involved in rice yield were statistically unaffected, except for the number of full grains per panicle was increased in
cbd1
. Collectively, OsHemA plays an essential role in Chl biosynthesis in rice and its weak allele can adjust leaf color and Chls content without compromise to rice yield.
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iTRAQ-based quantitative proteomic analysis reveals key pathways responsible for scurs in sheep (
Ovis aries
)
HE Xiao-hong, CHEN Xiao-fei, PU Ya-bin, GUAN Wei-jun, SONG Shen, ZHAO Qian-jun, LI Xiangchen, JIANG Lin, MA Yue-hui
2018, 17 (
08
): 1843-1851. DOI:
10.1016/S2095-3119(17)61894-X
Abstract
(
449
)
PDF in ScienceDirect
Scurs is a horn phenotype that exhibits as small corneous structures on the skull due to the deformed development of horn tissues. Previous genome-wide association analysis of scurs in Soay sheep showed a significant association to the polled locus,
relaxin-like receptor 2
(
RXFP2
). However, the molecular mechanism underlying the development of scurs remains largely unknown. In the present study, we performed an iTRAQ-based quantitative proteomic analysis of horn tissues from both scurs and normal two-horned and four-horned individuals among Altay sheep to identify the differentially expressed proteins (DEPs) responsible for the scurs phenotype. In total, 232 proteins showed significant differential expression, and the most significant Gene ontology categories were the adhesion processes (biological adhesion (
P
=4.07×10
–17
) and cell adhesion (
P
=3.7×10
–16
)), multicellular organismal process (single-multicellular organism process (P=2.06×10
–11
) and multicellular organismal process (
P
=2.29×10
–11
)) and extracellular processes (extracellular matrix organization (
P
=4.77×10
–16
) and extracellular structure organization (
P
=4.93×10–16)). Kyoto encyclopedia of genes and genomes (KEGG) analysis showed that extracellular matrix (ECM)-receptor interactions and focal adhesion pathways were the most significant pathways. This finding is consistent with the reduced formation of extracellular matrix in scurs and the development of deformed horn tissues. Our study helps to elucidate the inheritance pattern of sheep horn traits from the perspectives of downstream expressed proteins.
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Accuracy comparison of dry matter intake prediction models evaluated by a feeding trial of lactating dairy cows fed two total mixed rations with different forage source
PAN Xiao-hua, YANG Liang, Yves Beckers, XIONG Ben-hai, JIANG Lin-shu
2017, 16 (
04
): 921-929. DOI:
10.1016/S2095-3119(16)61483-1
Abstract
(
772
)
PDF in ScienceDirect
Dry matter intake (DMI) prediction models of NRC (2001), Fox
et al.
(2004) and Fuentes-Pila
et al.
(2003) were targeted in the present study, and the objective was to evaluate their prediction accuracy with feeding trial data of 32 lactating Holstein cows fed two total mixed rations with different forage source. Thirty-two cows were randomly assigned to one of two total mixed ration groups: a ration containing a mixed forage (MF) of 3.7% Chinese wildrye, 28.4% alfalfa hay and 26.5% corn silage diet and another ration containing 33.8% corn stover (CS) as unique forage source. The actual DMI was greater in MF group than in CS group (
P
=0.064). The NRC model to predict DMI resulted in the lowest root mean square prediction error for both MF and CS groups (1.09 kg d
–1
vs
. 1.28 kg d
–1
) and the highest accuracy and precision based on concordance correlation coefficient for both MF and CS diet (0.89
vs
. 0.87). Except the NRC model, the other two models presented mean and linear biases in both MF and CS diets when prediction residuals were plotted against predicted DMI values (
P
<0.001). The DMI variation in MF was caused by week of lactation (55.6%), milk yield (13.9%), milk fat percentage (7.1%) and dietary neutral detergent fiber (13.3%), while the variation in CS was caused by week of lactation (50.9%), live body weight (28.2%), milk yield (8.4%), milk fat percentage (5.2%) and dietary neutral detergent fibre (3.8%). In a brief, the NRC model to predict DMI is comparatively acceptable for lactating dairy cows fed two total mixed rations with different forage source.
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Corn cob biochar increases soil culturable bacterial abundance without enhancing their capacities in utilizing carbon sources in Biolog Eco-plates
JIANG Lin-lin, HAN Guang-ming, LAN Yu, LIU Sai-nan, GAO Ji-ping, YANG Xu, MENG Jun, CHEN Wen-fu
2017, 16 (
03
): 713-724. DOI:
10.1016/S2095-3119(16)61338-2
Abstract
(
1072
)
PDF in ScienceDirect
Biochar has been shown to influence soil microbial communities in terms of their abundance and diversity. However, the relationship among microbial abundance, structure and C metabolic traits is not well studied under biochar application. Here it was hypothesized that the addition of biochar with intrinsic properties (i.e., porous structure) could affect the proliferation of culturable microbes and the genetic structure of soil bacterial communities. In the meantime, the presence of available organic carbon in biochar may influence the C utilization capacities of microbial community in Biolog Eco-plates. A pot experiment was conducted with differenct biochar application (BC) rates: control (0 t ha
–1
), BC1 (20 t ha
–1
) and BC2 (40 t ha
–1
). Culturable microorganisms were enumerated
via
the plate counting method. Bacterial diversity was examined using denaturing gradient gel electrophoresis (DGGE). Microbial capacity in using C sources was assessed using Biolog Eco-plates. The addition of biochar stimulated the growth of actinomyces and bacteria, especially the ammonifying bacteria and azotobacteria, but had no significant effect on fungi proliferation. The phylogenetic distribution of the operational taxonomic units could be divided into the following groups with the biochar addition:
Firmicutes
,
Acidobacteria
,
Gemmatimonadetes
,
Actinobacteria
,
Cyanobacteria
and
α-, β-, γ- and δ
-Proteobacteria
(average similarity >95%). Biochar application had a higher capacity utilization for L-asparagine, Tween 80, D-mannitol, L-serine, γ-hydroxybutyric acid, N-acetyl-D-glucosamine, glycogen, itaconic acid, glycyl-L-glutamic acid, α-ketobutyricacid and putrescine, whereas it had received decreased capacities in using the other 20 carbon sources in Biolog Eco-plates. Redundancy analysis (RDA) revealed that the physico-chemical properties, indices of bacterial diversity, and C metabolic traits were positively correlated with the appearance of novel sequences under BC2 treatment. Our study indicates that the addition of biochar can increase culturable microbial abundance and shift bacterial genetic structure without enhancing their capacities in utilizing C sources in Biolog Eco-plates, which could be associated with the porous structure and nutrients from biochar.
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Research progress and strategies for multifunctional rapeseed: A case study of China
FU Dong-hui, JIANG Ling-yan, Annaliese S Mason, XIAO Mei-li, ZHU Long-rong, LI Li-zhi, ZHOU Qing-hong, SHEN Chang-jian, HUANG Chun-hui
2016, 15 (
8
): 1673-1684. DOI:
10.1016/S2095-3119(16)61384-9
Abstract
(
2063
)
PDF in ScienceDirect
Rapeseed (
Brassica napus
), is an important source of edible oil, animal fodder, vegetables, condiments and biodiesel, and plays a significant role in securing edible oil production worldwide. However, in countries with comparatively low levels of agricultural mechanization, such as China, increasing costs of labor and agricultural inputs are decreasing rapeseed profitability, and hence the area of rapeseed under cultivation. If the value of rapeseed crops is not further increased, the rapeseed growing area will continue to decrease, potentially jeopardizing oil production. Therefore, full exploitation of the existing and potential value of rapeseed is desirable. Different rapeseed products are already utilized in different ways, with more applications currently underutilized. As well as oil extraction from the seeds, the shoot and leaves can be used as vegetables, the roots to absorb soil cadmium for pollution remediation, the flowers for sightseeing and as a source of nectar, the pollen for extracting flavonoids and useful amino acids, the seeds/seed meal for extracting isthiocyanates and other important sulforaphane compounds, the straw and seed meal for fodder, and immature whole plants for green manure. This review summarizes recent research on ways to explore the potential holistic value of rapeseed, by taking the example of multifunctionality of rapeseed in China.
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Excessive ammonia inhibited transcription of MsU2 gene and furthermore affected accumulation distribution of allantoin and amino acids in alfalfa Medicago sativa
WANG Li, JIANG Lin-lin, Nomura Mika, Tajima Shigeyuki, CHENG Xian-guo
2015, 14 (
7
): 1269-1282. DOI:
10.1016/S2095-3119(14)60908-4
Abstract
(
2058
)
PDF in ScienceDirect
In legume plants, uricase gene (Nodulin-35) plays a positive role in metabolism of ureide and amide compounds in symbiotic nitrogen-fixing in the nodules. In this study, a pot experiment was performed to examine the effects of ammonium application on the transcription of MsU2 gene and distribution of major nitrogen compounds in alfalfa Medicago sativa. Data showed that alfalfa plant has a significant difference in contents of nitrogen compounds in xylem saps compared with soybean plant, and belongs to typical amide type legume plants with little ureide accumulation, and the accumulation of asparagines and ureide in the tissues of alfalfa is mainly gathered in the nodules. Northern blotting showed that excessive ammonium significantly inhibited the transcription of MsU2 gene in the nodules and roots, and mRNA accumulation of MsU2 gene in the plants exposed to excessive ammonium decreased gradually with culture time extension, indicating that application of ammonium significantly inhibited the transcription of MsU2 gene in the alfalfa plants. Although the application of excessive ammonium increased the contents of amino acids in various tissues of alfalfa, the accumulation of allantoin reflecting the strength of uricase activity is remarkably reduced in the xylem saps, stems and nodules when alfalfa plants exposed to excessive ammonium, suggesting that application of excessive ammonium generated a negative effect on symbiosis fixing-nitrogen system due to inhibition of ammonium ion on uricase activity in the nodules of alfalfa. This result seems to imply that application of excessive ammonium in legume plants should not be proposed to avoid affecting the ability of fixing nitrogen in the nodules of legume plants, and reasonable dose of ammonium should be recommended to effectively utilize the fixed N from atmosphere in legume plant production.
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Thellungiella halophila ThPIP1 gene enhances the tolerance of the transgenic rice to salt stress
QIANG Xiao-jing, YU Guo-hong, JIANG Lin-lin, SUN Lin-lin, ZHANG Shu-hui, LI Wei, CHENG Xian-guo
2015, 14 (
10
): 1911-1922. DOI:
10.1016/S2095-3119(15)61045-0
Abstract
(
1773
)
PDF in ScienceDirect
Aquaporin proteins were demonstrated to play an important regulatory role in transporting water and other small molecules. To better understand physiological functions of aquaporins in extremophile plants, a novel ThPIP1 gene from the Thellungiella halophila was isolated and functionally characterized in the transgenic rice. Data showed that the ThPIP1 protein encoded 284 amino acids, and was identified to be located on the plasma membrane. The expression of ThPIP1 gene in the shoots and roots of T. halophila seedlings were induced by high salinity. The transgenic rice overexpressing ThPIP1 gene significantly increased plants tolerance to salt stress through the pathway regulating the osmotic potentials, accumulation of organic small molecules substances and the ratio of K+/Na+ in the plant cells. Moreover, split-ubiquitin yeast two-hybrid assay showed that ThPIP1 protein specifically interacted with ThPIP2 and a non-specific lipid-transfer protein 2, suggesting that ThPIP1 probably play a key role in responding to the reactions of multiple external stimulus and in participating in different physiological processes of plants exposed to salt stress.
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