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Journal of Integrative Agriculture
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Transcriptome analysis reveals effects of red and blue lightemitting diodes (LEDs) on the growth, chlorophyll fluorescence and endogenous plant hormones of potato (
Solanum tuberosum
L.) plantlets cultured in vitro
CHEN Li-li, WANG Hao-ying, GONG Xiao-chen, ZENG Zhao-hai, XUE Xu-zhang, HU Yue-gao
2021, 20 (
11
): 2914-2931. DOI:
10.1016/S2095-3119(20)63393-7
Abstract
(
131
)
PDF in ScienceDirect
Red and blue light illumination has been reported to significantly affect plantlet growth. Potato is an important food and feed crop in the world and potato plantlet cultured in vitro plays an important role in potato production. However, few studies have documented the effects of red and blue light on the growth of potato plantlets revealed at the transcriptome level. The objective of this study was to determine the growth and physiological responses of potato plantlets cultured in vitro under monochromatic red (RR), monochromatic blue (BB) as well as combined red and blue (RB) LEDs using the RNA-Seq technique. In total, 3 150 and 814 differentially expressed genes (DEGs) were detected in potato plantlets under RR and BB, respectively, compared to RB (used as control). Compared to the control, the DEGs enriched in “photosynthesis” and “photosynthesis-antenna proteins” metabolic pathways were up-regulated and down-regulated by BB and RR, respectively, which might be responsible for the increases and decreases of maximum quantum yield (
F
v
/
F
m
), photochemical quantum yield (
φ
PSII
), photochemical quenching (qP) and electron transfer rate (ETR) in BB and RR, respectively. Potato plantlets exhibited dwarfed stems and extended leaves under BB, whereas elongated stems and small leaves were induced under RR. These dramatically altered plantlet phenotypes were associated with variable levels of endogenous plant hormones gibberellin (GAs), indoleacetic acid (IAA) and cytokinins (CKs), as assessed in stems and leaves of potato plantlets. In addition, monochromatic red and blue LEDs trigged the opposite expression profiles of DEGs identified in the “plant hormone signal transduction” metabolic pathway, which were closely related to the endogenous plant hormone levels in potato plantlets. Our results provide insights into the responses of potato plantlets cultured in vitro to red and blue LEDs at the transcriptomic level and may contribute to improvements in the micro-propagation of potato plantlets cultured
in vitro
from the light spectrum aspect.
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Effects of different LEDs light spectrum on the growth, leaf anatomy, and chloroplast ultrastructure of potato plantlets in vitro and minituber production after transplanting in the greenhouse
CHEN Li-li, ZHANG Kai, GONG Xiao-chen, WANG Hao-ying, GAO You-hui, WANG Xi-quan, ZENG Zhao-hai, HU Yue-gao
2020, 19 (
1
): 108-119. DOI:
10.1016/S2095-3119(19)62633-X
Abstract
(
162
)
PDF in ScienceDirect
Light spectrum plays an important role in regulating the growth and development of in vitro cultured potato (
Solanum tuberosum
L.) plantlets. The status of potato plantlets at the end of in vitro stage influences the minituber production after transplanting. With 100 μmol m
–2
s
–1
total photosynthetic photon flux density (PPFD), a light spectrum study of 100% red light emitting diodes (LEDs) light spectrum (RR), 100% blue LEDs light spectrum (BB), 65% red+35% blue LEDs light spectrum (RB), and 45% red+35% blue+20% green LEDs light spectrum (RBG) providing illumination at the in vitro cultured stage of potato plantlets for 4 weeks using fluorescent lamp as control (CK) was performed to investigate the effects of LEDs light spectrum on the growth, leaf anatomy, and chloroplast ultrastructure of potato plantlets in vitro as well as the minituber yield after 2 months transplanting in the greenhouse. Compared to CK, RB and RBG promoted the growth of potato plantlets
in vitro
with increased stem diameter, plantlet fresh weight, plantlet dry weight, and health index. Furthermore, BB induced the greatest stem diameter as well as the highest health index in potato plantlets in vitro. Root activity, soluble protein, and free amino acid were also significantly enhanced by BB, whereas carbohydrates were improved by RR. In addition, thickness of leaf, palisade parenchyma and spongy parenchyma was significantly increased by BB and RBG. Chloroplasts under BB and RBG showed well-developed grana thylakoid and stroma thylakoid. Unexpectedly, distinct upper epidermis with greatest thickness was induced and palisade parenchyma and spongy parenchyma were arranged neatly in RR. After transplanting in the greenhouse for 2 months, potato plantlets in vitro from BB, RB, and RBG produced high percentage of large size tuber. BB improved fresh and dry weights of the biggest tuber but decreased tuber number per plantlet. In addition, RBG increased tuber number as well as tuber fresh and dry weight slightly. Our results suggested monochromatic blue LEDs as well as combined red, blue or/and green LEDs light spectrum were superior to fluorescent lamp spectrum in micro-propagation of potato plantlets. Therefore, the application of RBG was suitable; BB and RB could be used as alternatives.
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Estimates on nitrogen uptake in the subsequent wheat by above-ground and root residue and rhizodeposition of using peanut labeled with
15
N isotope on the North China Plain
ZHANG Kai, ZHAO Jie, WANG Xi-quan, XU He-shui, ZANG Hua-dong, LIU Jing-na, HU Yue-gao, ZENG Zhao-hai
2019, 18 (
3
): 571-579. DOI:
10.1016/S2095-3119(18)62112-4
Abstract
(
262
)
PDF
(449KB)(
205
)
Leguminous crops play a vital role in enhancing crop yield and improving soil fertility. Therefore, it can be used as an organic N source for improving soil fertility. The purpose of this study was to (i) quantify the amounts of N derived from rhizodeposition, root and above-ground biomass of peanut residue in comparison with wheat and (ii) estimate the effect of the residual N on the wheat-growing season in the subsequent year. The plants of peanut and wheat were stem fed with
15
N urea using the cotton-wick method at the Wuqiao Station of China Agricultural University in 2014. The experiment consisted of four residue-returning strategies in a randomized complete-block design: (i) no return of crop residue (CR0); (ii) return of above-ground biomass of peanut crop (CR1); (iii) return of peanut root biomass (CR2); and (iv) return of all residue of the whole peanut plant (CR3). The 31.5 and 21% of the labeled
15
N isotope were accumulated in the above-ground tissues (leaves and stems) of peanuts and wheat, respectively. N rhizodeposition of peanuts and wheat accounted for 14.91 and 3.61% of the BG15N, respectively. The
15
N from the below-ground
15
N -labeled of peanuts were supplied 11.3, 5.9, 13.5, and 6.1% of in the CR0, CR1, CR2, and CR3 treatments, respectively. Peanut straw contributes a significant proportion of N to the soil through the decomposition of plant residues and N rhizodeposition. With the current production level on the NCP, it is estimated that peanut straw can potentially replace 104 500 tons of synthetic N fertilizer per year. The inclusion of peanut in rotation with cereal can significantly reduce the use of N fertilizer and enhance the system sustainability.
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Winter cover crops alter methanotrophs community structure in a double-rice paddy soil
LIU Jing-na, ZHU Bo, YI Li-xia, DAI Hong-cui, XU He-shui, ZHANG Kai, HU Yue-gao, ZENG Zhao-hai
2016, 15 (
3
): 553-565. DOI:
10.1016/S2095-3119(15)61206-0
Abstract
(
2200
)
PDF in ScienceDirect
Methanotrophs play a vital role in the mitigation of methane emission from soils. However, the influences of cover crops incorporation on paddy soil methanotrophic community structure have not been fully understood. In this study, the impacts of two winter cover crops (Chinese milk vetch (Astragalus sinicus L.) and ryegrass (Lolium multiflorum Lam.), representing leguminous and non-leguminous cover crops, respectively) on community structure and abundance of methanotrophs were evaluated by using PCR-DGGE (polymerase chain reaction-denaturing gradient gel electrophoresis) and real-time PCR technology in a double-rice cropping system from South China. Four treatments were established in a completely randomized block design: 1) double-rice cropping without nitrogen fertilizer application, CK; 2) double-rice cropping with chemical nitrogen fertilizer application (200 kg ha–1 urea for entire double-rice season), CF; 3) Chinese milk vetch cropping followed by double-rice cultivation with Chinese milk vetch incorporation, MV; 4) ryegrass cropping followed by double-rice cultivation with ryegrass incorporation, RG. Results showed that cultivating Chinese milk vetch and ryegrass in fallow season decreased soil bulk density and increased rice yield in different extents by comparison with CK. Additionally, methanotrophic bacterial abundance and community structure changed significantly with rice growth. Methanotrophic bacterial pmoA gene copies in four treatments were higher during late-rice season (3.18×107 to 10.28×107 copies g–1 dry soil) by comparison with early-rice season (2.1×107 to 9.62×107 copies g–1 dry soil). Type I methanotrophs absolutely predominated during early-rice season. However, the advantage of type I methanotrophs kept narrowing during entire double-rice season and both types I and II methanotrophs dominated at later stage of late-rice.
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Non-leguminous winter cover crop and nitrogen rate in relation to double rice grain yield and nitrogen uptake in Dongting Lake Plain, Hunan Province, China
ZHU Bo, YI Li-xia, XU He-shui, GUO Li-mei, HU Yue-gao, ZENG Zhao-hai, CHEN Fu, LIU Zhang-yong
2016, 15 (
11
): 2507-2514. DOI:
10.1016/S2095-3119(16)61331-X
Abstract
(
1264
)
PDF in ScienceDirect
Annual ryegrass (
Lolium multiflorum
Lam.), a non-leguminous winter cover crop, has been adopted to absorb soil native N to minimize N loss from an intensive double rice cropping system in southern China, but a little is known about its effects on rice grain yield and rice N use efficiency. In this study, effects of ryegrass on double rice yield, N uptake and use efficiency were measured under different fertilizer N rates. A 3-year (2009–2011) field experiment arranged in a split-plot design was undertaken. Main plots were ryegrass (RG) as a winter cover crop and winter fallow (WF) without weed. Subplots were three N treatments for each rice season: 0 (N
0
), 100 (N
100
) and 200 kg N ha
–1
(N
200
). In the 3-year experiment, RG reduced grain yield and plant N uptake for early rice (0.4–1.7 t ha
–1
for grain yield and 4.6–20.3 kg ha
–1
for N uptake) and double rice (0.6–2.0 t ha
–1
for grain yield and 6.3–27.0 kg ha
–1
for N uptake) when compared with WF among different N rates. Yield and N uptake decrease due to RG was smaller in N
100
and N
200
plots than in N
0
plots. The reduction in early rice grain yield in RG plots was associated with decrease number of panicles. Agronomic N use efficiency and fertilizer N recovery efficiency were higher in RG plots than winter fallow for early rice and double rice among different N rates and experimental years. RG tended to have little effect on grain yield, N uptake, agronomic N use efficiency, and fertilizer N recovery efficiency in the late rice season. These results suggest that ryegrass may reduce grain yield while it improves rice N use efficiency in a double rice cropping system.
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Effects of Nitrogen Application on Chlorophyll Fluorescence Parameters and Leaf Gas Exchange in Naked Oat
LIN Ye-chun, HU Yue-gao, REN Chang-zhong, GUO Lai-chun, WANG Chun-long, JIANG Ying
2013, 12 (
12
): 2164-2171. DOI:
10.1016/S2095-3119(13)60346-9
Abstract
(
1788
)
PDF in ScienceDirect
Naked oat (Avena nuda L.) was originated from China, where soil nitrogen (N) is low availability. The responses of chlorophyll (Chl.) fluorescence parameters and leaf gas exchange to N application were analysed in this study. After the N application rate ranged from 60 to 120 kg ha-1, variable fluorescence (Fv), the maximal fluorescence (Fm), the maximal photochemical efficiency (Fv/Fm), quantum yield (ΦPS II) of the photosynthetic system II (PS II), electron transport rate (ETR), and photochemical quenching coefficient (qP) increased with N application level, however, non-photochemical quenching coefficient (qN) decreased. Moreover, there was no difference in initial fluorescence (Fo) with further more N enhancement. The maximum net photosynthetic rate (Pmax), apparent dark respiration rate (Rd) and light saturation point (LSP) were improved with 40-56 kg N ha-1 as basal fertilizer and 24-40 kg N ha-1 as top dressing fertilizer applied at jointing stage. Initial quantum yield (α) was decreased with 24 kg N ha-1 as basal fertilizer and 56 kg N ha-1 as top dressing fertilizer. Flag-leaf net photosynthetic rate (Pn) was significantly enhanced at the jointing and heading stages with 40-56 kg N ha-1 as basal fertilizer; in addition, increased at grain filling stage of naked oat with 40-56 kg N ha-1 as top dressing fertilizer. 90 kg N ha-1 (50-70% as basal fertilizer and 30-50% as top dressing fertilizer) application is recommended to alleviate photodamage of photosystem and improve the photosynthetic rate in naked oat.
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Effects of Chinese Milk Vetch (Astragalus sinicus L.) Residue Incorporation on CH4 and N2O Emission from a Double-Rice Paddy Soil
ZHU Bo, YI Li-xia, HU Yue-gao, ZENG Zhao-hai, TANG Hai-ming, YANG Guang-li, XIAO Xiao-ping
2012, 12 (
9
): 1537-1544. DOI:
10.1016/S1671-2927(00)8686
Abstract
(
2034
)
PDF in ScienceDirect
Methane (CH4) and nitrous oxide (N2O) emissions from paddy soils have seldom been estimated when leguminous green manure is applied as a nitrogen source. In this paper, gas fluxes were measured by using a pot sampling device combined with a static chamber method to estimate the effects of Chinese milk vetch (Astragalus sinicus L., CMV) on CH4 and N2O emissions and their integrated global warming potentials (GWP) in a double-rice cropping system. Four treatments (no nitrogen fertilizer, NF; urea as chemical fertilizer, CF; CMV incorporation, MV; 50% CMV incorporation and 50% urea, MVCF) were established. CH4 flux peaked on the 15th d after treatment application. Total season CH4 emission was increased by MV and MVCF by 370 and 209%, 152 and 66%, when compared with NF and CF, respectively. Most of the increased CH4 was emitted in the first two months after incorporation of CMV. N2O emission from CF was 17- and 5.6-fold higher than that from MV and MVCF, respectively. Application of CMV restricted N2O emission caused by the application of urea. Improved CMV residue management was needed to minify CH4 emission induced by the input of organic material. Despite the highest GWP being found in MV, we recommend CMV, when applied as an N source in paddy fields, as a potential mitigation tool for greenhouse gas emissions.
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