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Construction of a high-density adzuki bean genetic map and evaluation of its utility based on a QTL analysis of seed size

WANG Li-xia, WANG Jie, LUO Gao-ling, YUAN Xing-xing, GONG Dan, HU Liang-liang, WANG Su-hua, CHEN Hong-lin, CHEN Xin, CHENG Xu-zhen

2021, 20 (7): 1753-1761. DOI: 10.1016/S2095-3119(20)63343-3

Abstract （162） PDF in ScienceDirect

Adzuki bean (Vigna angularis (Willd.) Ohwi & Ohashi) is an annual cultivated leguminous crop commonly grown in Asia and consumed worldwide. However, there has been limited research regarding adzuki bean genetics, which has prevented the efficient application of genes during breeding. In the present study, we constructed a high-density genetic map based on whole genome re-sequencing technology and validated its utility by mining QTLs related to seed size. Moreover, we analyzed the sequences flanking insertions/deletions (InDels) to develop a set of PCR-based markers useful for characterizing adzuki bean genetics. A total of 2 904 markers were mapped to 11 linkage groups (LGs). The total length of the map was 1 365.0 cM, with an average distance between markers of 0.47 cM. Among the LGs, the number of markers ranged from 208 (LG7) to 397 (LG1) and the total distance ranged from 97.4 cM (LG9) to 155.6 cM (LG1). Twelve QTLs related to seed size were identified using the constructed map. The two major QTLs in LG2 and LG9 explained 22.1 and 18.8% of the total phenotypic variation, respectively. Ten minor QTLs in LG4, LG5 and LG6 explained 3.0–10.4% of the total phenotypic variation. A total of 9 718 primer pairs were designed based on the sequences flanking InDels. Among the 200 selected primer pairs, 75 revealed polymorphisms in 24 adzuki bean germplasms. The genetic map constructed in this study will be useful for screening genes related to other traits. Furthermore, the QTL analysis of seed size and the novel markers described herein may be relevant for future molecular investigations of adzuki bean and will be useful for exploiting the mechanisms underlying legume seed development.

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Analysis of anApplied Core Collection ofAdzuki Bean Germplasm by Using SSR Markers

WANG Li-xia, CHENG Xu-zhen, WANG Su-hua, TIAN Jing

2012, 12 (10): 1601-1609. DOI: 10.1016/S1671-2927(00)8693

Abstract （1280） PDF in ScienceDirect

Genetic diversity of 158 accessions of an applied core collection of adzuki bean (Vigna angularis) and 18 wild genotypes were assessed by using 85 microsatellite markers. With an average of 5.81 alleles per locus, 493 alleles were detected, and their distribution frequencies lower than 5% accounted for 73.02% of the total number. The distributions of alleles between the cultivated and the wild adzuki bean germplasm are different, with a higher allelic diversity in the wild germplasm than that of the cultivated ones. An obvious genetic differentiation was also observed between the wild and the cultivated adzuki beans, and SSR markers may be useful in study identification and classification of them. Among cultivated adzuki bean, the genetic similarity coefficient varied from 0.366 to 0.939. Genetic structure analysis can clearly separate the wild genotypes from the cultivated adzuki bean, and also can divide the cultivated ones into different populations, as these populations are closely agreeable with the ecological regions where they originally grow. The results of this study will be useful in arranging local breeding programs, especially in the aspect of parental combinations or identification of progenies. These SSR markers can also provide important information to explain the genetic relationship between the cultivated and wild adzuki beans, and to accelerate the wild gene resources in broadening the gene pool in breeding program.

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Application of Near-Infrared Reflectance Spectroscopy to the Evaluation of D-chiro-Inositol, Vitexin, and Isovitexin Contents in Mung Bean

YAO Yang, CHENG Xu-zhen , REN Gui-xing

2011, 10 (12): 1986-1991. DOI: 10.1016/S1671-2927(11)60200-9

Abstract （2196） PDF in ScienceDirect

Mung bean (Vigna radiata L.) is rich in D-chiro-inositol (DCI), vitexin, and isovitexin, which has beneficial effects on antidiabetic and inhibits the formation of advanced glycation end-products. In this study, near-infrared reflectance spectroscopy (NIRS) was used to predict the contents of DCI, vitexin, and isovitexin in mung bean. The spectra data were linearized with those determined by high-performance liquid chromatography (HPLC). The models for predicting the DCI, vitexin, and isovitexin contents in mung bean were developed using partial least-squares (PLS) algorithm. Cross-validation procedures indicated good correlations between HPLC data and NIRS predictions (R2=0.90 for DCI, R2=0.81 for vitexin, and R2=0.90 for isovitexin). The predictive contents of DCI, vitexin, and isovitexin ranged from 2.082 to 3.084%, 1.277 to 1.307%, and 0.5998 to 0.6286%, respectively. The results showed that NIRS, a well-established and widely applied technique, could be applied to rapid detection of DCI, vitexin, and isovitexin contents in mung bean.

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Contents of D-chiro-Inositol, Vitexin, and Isovitexin in Various Varieties of Mung Bean and Its Products

YAO Yang, CHENG Xu-zhen , REN Gui-xing

2011, 10 (11): 1710-1715. DOI: 10.1016/S1671-2927(11)60169-7

Abstract （2059） PDF in ScienceDirect

Mung bean (Vigna radiata L.) is rich in bioactive compounds including D-chiro-inositol (DCI), vitexin, and isovitexin, which have beneficial effects on patients with diabetes. To find a better source for these valuable chemicals, we have collected 110 varieties of mung bean seed samples and 8 mung bean products to determine the levels of these bioactive compounds. We also measured the DCI content in mung bean sprouts at different germination stages. Content of DCI, vitexin, and isovitexin in all mung bean varieties ranged from 0.43 to 5.79, 0.12 to 3.00, and 0.03 to 1.16 mg g-1, respectively. The varieties of C0001321, C0003522, and C0004485 have the highest DCI, vitexin, and isovitexin contents, respectively. The mung bean products in the market contained relatively lower level of these bioactive components. Contents of DCI, vitexin, and isovitexin in all mung bean products ranged from 0.119 to 0.717, 0 to 0.547, and 0 to 0.923 mg g-1, respectively. During the 112 h of germination test, DCI level steadily increased at first stage and reached the highest level at 80 h of germination (4.79 mg g-1). These results provide useful information for the selection of suitable varieties and proper germination stages to obtain functional ingredients from mung beans.

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Copyright © Journal of Integrative Agriculture
Sponsored by Chinese Academy of Agricultural Sciences (CAAS)
Co-sponsored by China Association of Agricultural Science Societies (CAASS)
Publishing Service by Elsevier B.V.on behalf of KeAi Communications Co. Ltd.
Full text available online at ScienceDirect

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