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Genetic dissection of the grain filling rate and related traits through linkage analysis and genome-wide association study in bread wheat
YU Hai-xia, DUAN Xi-xian, SUN Ai-qing, SUN Xiao-xiao, ZHANG Jing-juan, SUN Hua-qing, SUN Yan-yan, NING Tang-yuan, TIAN Ji-chun, WANG Dong-xue, LI Hao, FAN Ke-xin, WANG Ai-ping, MA Wu-jun, CHEN Jian-sheng
2022, 21 (10): 2805-2817.   DOI: 10.1016/j.jia.2022.07.032
Abstract215)      PDF in ScienceDirect      

Wheat grain yield is generally sink-limited during grain filling.  The grain-filling rate (GFR) plays a vital role but is poorly studied due to the difficulty of phenotype surveys.  This study explored the grain-filling traits in a recombinant inbred population and wheat collection using two highly saturated genetic maps for linkage analysis and genome-wide association study (GWAS).  Seventeen stable additive quantitative trait loci (QTLs) were identified on chromosomes 1B, 4B, and 5A.  The linkage interval between IWB19555 and IWB56078 showed pleiotropic effects on GFR1, GFRmax, kernel length (KL), kernel width (KW), kernel thickness (KT), and thousand kernel weight (TKW), with the phenotypic variation explained (PVE) ranging from 13.38% (KW) to 33.69% (TKW).  198 significant marker-trait associations (MTAs) were distributed across most chromosomes except for 3D and 4D.  The major associated sites for GFR included IWB44469 (11.27%), IWB8156 (12.56%) and IWB24812 (14.46%).  Linkage analysis suggested that IWB35850, identified through GWAS, was located in approximately the same region as QGFRmax2B.3-11, where two high-confidence candidate genes were present.  Two important grain weight (GW)-related QTLs colocalized with grain-filling QTLs.  The findings contribute to understanding the genetic architecture of the GFR and provide a basic approach to predict candidate genes for grain yield trait QTLs.

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Conditional and unconditional QTLs mapping of gluten strength in common wheat (Triticum aestivum L.)
LIU Tong-tong, LIU Kai, WANG Fang-fang, ZHANG Ying, LI Qing-fang, ZHANG Kai-ran, XIE Chu-peng, TIAN Ji-chun, CHEN Jian-sheng
2017, 16 (10): 2145-2155.   DOI: 10.1016/S2095-3119(16)61564-2
Abstract707)      PDF in ScienceDirect      
    Dissecting the genetic relationships among gluten-related traits is important for high quality wheat breeding. Quantitative trait loci (QTLs) analysis for gluten strength, as measured by sedimentation volume (SV) and gluten index (GI), was performed using the QTLNetwork 2.0 software. Recombinant inbred lines (RILs) derived from the winter wheat varieties Shannong 01-35×Gaocheng 9411 were used for the study. A total of seven additive QTLs for gluten strength were identified using an unconditional analysis. QGi1D-13 and QSv1D-14 were detected through unconditional and conditional QTLs mapping, which explained 9.15–45.08% of the phenotypic variation. QTLs only identified under conditional QTL mapping were located in three marker intervals: WPT-3743–GLU-D1 (1D), WPT-7001–WMC258 (1B), and WPT-8682–WPT-5562 (1B). Six pairs of epistatic QTLs distributed nine chromosomes were identified. Of these, two main effect QTLs (QGi1D-13 and QSv1D-14) and 12 pairs of epistatic QTLs were involved in interactions with the environment. The results indicated that chromosomes 1B and 1D are important for the improvement of gluten strength in common wheat. The combination of conditional and unconditional QTLs mapping could be useful for a better understanding of the interdependence of different traits at the QTL molecular level.
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Conditional QTL Mapping of Sedimentation Volume on Seven Quality Traits in Common Wheat
DENG Zhi-ying, ZHAO Liang, LIU Bin, ZHANG Kun-pu, CHEN Jian-sheng, QU Hou-lan, SUN Cai-ling, ZHANG Yong-xiang , TIAN Ji-chun
2013, 12 (12): 2125-2133.   DOI: 10.1016/S2095-3119(13)60352-4
Abstract1169)      PDF in ScienceDirect      
To evaluate the possible genetic interrelationships between flour components and the sedimentation volume (SD), a doubled haploid (DH) population comprising 168 lines were used to identify the conditional quantitative trait loci (QTLs) for SD in three environments. Ten additive QTLs and 15 pairs of epistatic QTLs were detected for SD through unconditional and conditional QTL mapping. Three major additive QTLs were detected for SD conditioned on the seven quality traits. Two additive QTLs were found to be independent of these traits. Three additive QTLs were suppressed by three of the seven traits because of non-detection in unconditional mapping. Three pairs of epistatic QTLs were completely affected by the seven traits because of detection in unconditional mapping but no-detection in conditional mapping. Twelve pairs of epistatic QTLs were detected in conditional mapping. Our results indicated that conditional mapping could contribute to a better understanding of the interdependence of different and closely correlated traits at the QTL molecular level, especially some minor QTLs were found. The conditional mapping approach provides new insights that will make it possible to avoid the disadvantages of different traits by breeding through molecular design.
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Effects of Papain Hydrolysis on the Pasting Properties of Wheat Flour
CHEN Jian-sheng, TIAN Ji-chun, DENG Zhi-ying, ZHANG Ying-xiang, FENG Shou-li, YAN Zuo-chen, ZHANG Xin-ye, YUAN Hui-qing
2012, 12 (12): 1948-1957.   DOI: 10.1016/S1671-2927(00)8731
Abstract1594)      PDF in ScienceDirect      
As one of the most effective enzymatic modification methods of protein, papain hydrolysis is applied widely in food production, accompanying starch pasting frequently in order to improve industrial quality. Effects of the papain hydrolysis on flour pasting properties were investigated in five papain/flour concentrations and five time-treatments. The structure of starch and protein networks in slurry was investigated under microscope before and after pasting. Results showed that papain hydrolysis influenced the pasting properties of wheat flour significantly through affecting structural characteristics, amylase activity and exothermic transition, especially during the early stage of hydrolysis. Peak viscosity, trough, final, integral area, and setback significantly decreased along with the increasing concentration of papain. Both hydrolysis time and concentration of papain had obviously effect on the breakdown. Pasting temperature and pasting time increased significantly with the enhancement of papain concentration. Hydrolysis time exerted minor effect on the pasting temperature and pasting time. The average peak time was slightly prolonged by lower concentration of papain, otherwise slightly shortened by higher concentration.
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