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1. Does nitrogen application rate affect the moisture content of corn grains?
ZHANG Yuan-meng, XUE Jun, ZHAI Juan, ZHANG Guo-qiang, ZHANG Wan-xu, WANG Ke-ru, MING Bo, HOU Peng, XIE Rui-zhi, LIU Chao-wei, LI Shao-kun
Journal of Integrative Agriculture    2021, 20 (10): 2627-2638.   DOI: 10.1016/S2095-3119(20)63401-3
摘要89)      PDF    收藏

本研究2017年和2018年的种植密度为12.0×104 株 ha-1,在施氮量为0-450 kg ha-1范围内设置4种不同氮肥处理;2019年种植密度分别为7.5×104和12.0×104 株 ha-1,在施氮量为0-765 kg ha-1范围内设置18种不同氮肥处理。通过测定不同处理下玉米生育期、绿叶的叶面积指数(LAI)、籽粒含水量和籽粒脱水率指标,阐明施氮量对玉米籽粒含水量的影响。结果表明,施氮量从0增加到765 kg ha-1,玉米吐丝期推迟约1天,成熟期推迟约1-2天。在生理成熟期和生理成熟期后,不同施氮量处理下籽粒含水量极差为1.9-4.0%。随着施氮量的增加,生理成熟后玉米籽粒的脱水率降低,但施氮量与籽粒脱水率之间没有统计学意义。生理成熟期叶面积指数与生理成熟后籽粒脱水速率之间无显著相关性。总之,施氮对玉米生理成熟期和成熟后籽粒含水量均有影响,但不同施氮量对籽粒含水量的影响较小。以上结果表明,在生产中不需要考虑施氮对玉米籽粒含水量的影响


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2. Identification of an H1N1 subtype of swine influenza virus and serological analysis
SUN Fa-chao, TAN Min, ZHANG Yuan-chao, WANG Yu-chao, CAO Sheng-liang, DING Guo-fei, CONG Fang-yuan, GUO Li-hong, LIU Si-dang, XIAO Yi-hong
Journal of Integrative Agriculture    2019, 18 (7): 1436-1442.   DOI: 10.1016/S2095-3119(19)62579-7
摘要229)      PDF    收藏
To investigate the epizootic of swine influenza virus (SIV), 60 nasal swabs were collected from a clinical cases of pig farm in Tai’an City, Shandong Province of China in April 2017.  SIV was isolated by inoculating into 10-day-old Special Pathogen Free embryonated eggs and the whole genome was sequenced.  An H1N1 subtype SIV was isolated and designated as A/swine/Shandong/TA04/2017(H1N1).  Phylogenetic analysis showed that apart from the polymerase A (PA) fragment belonging to the 2009 pandemic H1N1 branch, seven genome segments belonged to avian-like H1N1 influenza virus lineage.  The cleavage site sequence of the hemagglutinin (HA) protein was PSIQSR↓G, which is a typical molecular biological characteristic.  Five potential N-glycosylation sites (N14, N26, N277, N484 and N543) were found in the HA gene.  To further investigate the epidemiology of SIV in this farm, the 995 serum samples were assessed with EAH1N1 2009 pandemic H1N1 and H3N2 antigens.  The results showed that the total positive rate was 65.43%.  The positive rates of single virus infection detected by EAH1N1, 2009pdmH1N1 and H3N2 for serum HI (Hemagglutination inhibition) were 48.35, 30.85 and 7.47%, respectively.  The results showed that SIV in Shandong Province has been reassorted in some segments and the SIV-positive rate was high on the SIV outbreak farm.  These data provide evidence of an epizootic of SIV.
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3. Characterization of GhSERK2 and its expression associated with somatic embryogenesis and hormones level in Upland cotton
LIU Zheng-jie, ZHAO Yan-peng, ZENG Ling-he, ZHANG Yuan, WANG Yu-mei, HUA Jin-ping
Journal of Integrative Agriculture    2018, 17 (03): 517-529.   DOI: 10.1016/S2095-3119(17)61726-X
摘要678)      PDF    收藏
Somatic embryogenesis (SE) is one of the most important steps during regeneration of cotton, but the molecular mechanism of SE remains unclear.  SOMATIC EMBRYOGENSIS RECEPTOR KINASE (SERK) gene is known to function in SE.  A homolog GhSERK2 (accession number: JF430801) was cloned from Upland cotton and characterized for its functions in SE.  GhSERK2 expressed in different tissues and showed higher expression level in floral organs than vegetative ones with the highest levels in ovule and anther.  GhSERK2 expressed during SE with a high level at globular embryos stage.  Upon treatment with indole-3-butytic acid (IBA), the transcription level of GhSERK2 was induced and promoted SE subsequently.  A 2-day treatment of 2,4-dichlorophenoxyacetic acid (2,4-D) induced the expression of GhSERK2, but treatments of 2,4-D for longer periods sharply inhibited the GhSERK2 transcription level of embryogenic callus (EC).  The levels of hormones, including 3-indoleacetic acid (IAA), abscisic acid (ABA), and brassinosteroid (BR), were increased in the initial calli induced from the over-expression of GhSERK2 cotton.  Our results indicated that GhSERK2 expression was associated with induction of SE and closely related to hormone levels during tissue culture in Upland cotton, and the gene might play an important role in regeneration of cotton.
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4. Nested RT-PCR method for the detection of European avian-like H1 swine inflenza A virus
WEI Yan-di, PEI Xing-yao, ZHANG Yuan, YU Chen-fang, SUN Hong-lei, LIU Jin-hua, PU Juan
Journal of Integrative Agriculture    2016, 15 (05): 1095-1102.   DOI: 10.1016/S2095-3119(15)61092-9
摘要1681)      PDF    收藏
    Swine influenza A virus (swine IAV) circulates worldwide in pigs and poses a serious public health threat, as evidenced by the 2009 H1N1 influenza pandemic. Among multiple subtypes/lineages of swine influenza A viruses, European avian-like (EA) H1N1 swine IAV has been dominant since 2005 in China and caused infections in humans in 2010. Highly sensitive and specific methods of detection are required to differentiate EA H1N1 swine IAVs from viruses belonging to other lineages and subtypes. In this study, a nested reverse transcription (RT)-PCR assay was developed to detect EA H1 swine IAVs. Two primer sets (outer and inner) were designed specifically to target the viral hemagglutinin genes. Specific PCR products were obtained from all tested EA H1N1 swine IAV isolates, but not from other lineages of H1 swine IAVs, other subtypes of swine IAVs, or other infectious swine viruses. The sensitivity of the nested RT-PCR was improved to 1 plaque forming unit (PFU) mL–1 which was over 104 PFU mL–1 for a previously established multiplex RT-PCR method. The nested RT-PCR results obtained from screening 365 clinical samples were consistent with those obtained using conventional virus isolation methods combined with sequencing. Thus, the nested RT-PCR assay reported herein is more sensitive and suitable for the diagnosis of clinical infections and surveillance of EA H1 swine IAVs in pigs and humans.
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5. Genetic parameters for somatic cell score and production traits in the first three lactations of Chinese Holstein cows
ZHAO Fu-ping, GUO Gang, WANG Ya-chun, GUO Xiang-yu, ZHANG Yuan, DU Li-xin
Journal of Integrative Agriculture    2015, 14 (1): 125-130.   DOI: 10.1016/S2095-3119(14)60758-9
摘要1666)      PDF    收藏
The objectives of this study were to estimate genetic parameters of lactation average somatic cell scores (LSCS) and examine genetic associations between LSCS and production traits in the first three lactations of Chinese Holstein cows using single-parity multi-trait animal model and multi-trait repeatability animal model. There were totally 273 605 lactation records of Chinese Holstein cows with first calving from 2001 to 2012. Heritability estimates for LSCS ranged from 0.144 to 0.187. Genetic correlations between LSCS and 305 days milk, protein percentage and fat percentage were –0.079, –0.082 and –0.135, respectively. Phenotypic correlation between LSCS and 305 days milk yield was negative (–0.103 to –0.190). Genetic correlation between 305 days milk and fat percentage or protein percentage was highly negative. Genetic correlation between milk fat percentage and milk protein percentage was highly favorable. Heritabilities of production traits decreased with increase of parity, whereas heritability of LSCS increased with increase of parity.
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6. Identification of Zinc Deficiency-Responsive MicroRNAs in Brassica juncea Roots by Small RNA Sequencing
SHI Dong-qing, ZHANG Yuan, MA Jin-hu, LI Yu-long , XU Jin
Journal of Integrative Agriculture    2013, 12 (11): 2036-2044.   DOI: 10.1016/S2095-3119(13)60641-3
摘要1850)      PDF    收藏
The importance of zinc (Zn) as a micronutrient essential for plant growth and development is becoming increasingly apparent. Much of the world’s soil is Zn-deficient, and soil-based Zn deficiency is often accompanied by Zn deficiency in human populations. MicroRNAs (miRNAs) play important roles in the regulation of plant gene expression at the level of translation. Many miRNAs involved in the modulation of heavy metal toxicity responses in plants have been identified; however, the role of miRNAs in the plant Zn deficiency response is almost completely unknown. Using high-throughput Solexa sequencing, we identified several miRNAs that respond to Zn deficiency in Brassica juncea roots. At least 21 conserved candidate miRNA families, and 101 individual members within those families, were identified in both the control and the Zn-deficient B. juncea roots. Among this, 15 miRNAs from 9 miRNA families were differentially expressed in the control and Zn-deficient plants. Of the 15 differentially expressed miRNAs, 13 were up-regulated in the Zn-deficient B. juncea roots, and only two, miR399b and miR845a, were down-regulated. Bioinformatics analysis indicated that these miRNAs were involved in modulating phytohormone response, plant growth and development, and abiotic stress responses in B. juncea roots. These data help to lay the foundation for further understanding of miRNA function in the regulation of the plant Zn deficiency response and its impact on plant growth and development.
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7. Fine Mapping QTLs Affecting Milk Production Traits on BTA6 in Chinese Holstein with SNP Markers
LIU Rui, SUN Dong-xiao, WANG Ya-chun, YU Ying, ZHANG Yi, CHEN Hui-yong, ZHANG Qin, ZHANG Sheng-li , ZHANG Yuan
Journal of Integrative Agriculture    2013, 12 (1): 110-117.   DOI: 10.1016/S2095-3119(13)60211-7
摘要1434)      PDF    收藏
Our previous studies demonstrated that the region around markers BMS470 and BMS1242 on BTA6 showed a linkage to 305-d milk yield and composition traits in the Chinese Holstein population. We herein focused on such narrow region to fine map milk production QTLs with 15 SNPs across 25 Mb with each SNP in 1 Mb within most regions in a Chinese Holstein population with daughter design. 1 449 Holstein cows and 11 sires were genotyped for such SNPs by using TaqMan probe and RFLP assays. Multipoint linkage analysis across family revealed a QTL affecting milk yield between PPARGC1A C4075T and SLC34A2 T1713C. Meanwhile, within family analysis found three milk yield QTLs (two in CR T60984131G-CEP135 C501T and one in PDLIM5 A106C-OPN T3907, a fat yield QTL in UGDH T1670C-CR T60984131G region, and two protein yield QTLs in TBC1D1 G501C-UGDH T1670C and PPARGC1A C4075T-SLC34A2 T1713C, respectively. Associations between aforementioned significant SNP markers and milk production traits were further implemented. We found significant associations of PPARGC1A C4075T, SLC34A2 T1713C with milk yield (P<0.05, P<0.01, P<0.01), UGDH T1670C, and CR T60984131G with fat yield (P<0.01, P<0.01), and PPARGC1A C4075T, SLC34A2 T1713C, UGDH T1670C and OPN T3907 with protein yield (P<0.01, P<0.01, P<0.01, P<0.01). Our findings implied that QTLs affecting milk production traits on BTA6 were pleictropism or multigenic effect and PPARGC1A and OPN may be the causal mutations behind milk production QTLs on BTA6 in the Chinese Holstein population.
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8. Evaluation of Breeding Programs Combining Genomic Information in Chinese Holstein
CHEN Jun, WANG Ya-chun, ZHANG Yi, SUN Dong-xiao, ZHANG Sheng-li , ZHANG Yuan
Journal of Integrative Agriculture    2011, 10 (12): 1949-1957.   DOI: 10.1016/S1671-2927(11)60196-X
摘要1740)      PDF    收藏
Current study adopted gene flow theory and selection index method to compare the breeding efficiency of three breeding plans in the Chinese Holstein cattle using ZPLAN software. Simulated conventional progeny-testing program (PT) and young sire program (YS) were compared with breeding program using genomic selection (GS) taking parameters derived from Chinese Holstein breeding system. The results showed that, GS shortened generation interval by 1.5-2.2 years, and increased the genetic progress by 30-50%, comparing to PT and YS, respectively. Economic analysis showed that GS could obtain a higher breeding efficiency, being 119 and 97% higher than that of PT and YS, respectively; and GS was also powerful in improving functional traits with a low heritability. Main factors affecting breeding efficiency in GS were further discussed, including selection intensity, accuracy and the cost of SNP genotyping. Our finding provided references for future designing and implementing GS in Chinese dairy population.
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