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1. Carbon sequestration rate, nitrogen use efficiency and rice yield responses to long-term substitution of chemical fertilizer by organic manure in a rice–rice cropping system
Nafiu Garba HAYATU, LIU Yi-ren, HAN Tian-fu, Nano Alemu DABA, ZHANG Lu, SHEN Zhe, LI Ji-wen, Haliru MUAZU, Sobhi Faid LAMLOM, ZHANG Hui-min
Journal of Integrative Agriculture    2023, 22 (9): 2848-2864.   DOI: 10.1016/j.jia.2022.12.006
摘要151)      PDF    收藏

Combined application of chemical fertilizers with organic amendments was recommended as a strategy for improving yield, soil carbon storage, and nutrient use efficiency.  However, how the long-term substitution of chemical fertilizer with organic manure affects rice yield, carbon sequestration rate (CSR), and nitrogen use efficiency (NUE) while ensuring environmental safety remains unclear.  This study assessed the long-term effect of substituting chemical fertilizer with organic manure on rice yield, CSR, and NUE.  It also determined the optimum substitution ratio in the acidic soil of southern China.  The treatments were: (i) NPK0, unfertilized control; (ii) NPK1, 100% chemical nitrogen, phosphorus, and potassium fertilizer; (iii) NPKM1, 70% chemical NPK fertilizer and 30% organic manure; (iv) NPKM2, 50% chemical NPK fertilizer and 50% organic manure; and (v) NPKM3, 30% chemical NPK fertilizer and 70% organic manure.  Milk vetch and pig manure were sources of manure for early and late rice seasons, respectively.  The result showed that SOC content was higher in NPKM1, NPKM2, and NPKM3 treatments than in NPK0 and NPK1 treatments.  The carbon sequestration rate increased by 140, 160, and 280% under NPKM1, NPKM2, and NPKM3 treatments, respectively, compared to NPK1 treatment.  Grain yield was 86.1, 93.1, 93.6, and 96.5% higher under NPK1, NPKM1, NPKM2, and NPKM3 treatments, respectively, compared to NPK0 treatment.  The NUE in NPKM1, NPKM2, and NPKM3 treatments was higher as compared to NPK1 treatment for both rice seasons.  Redundancy analysis revealed close positive relationships of CSR with C input, total N, soil C:N ratio, catalase, and humic acids, whereas NUE was closely related to grain yield, grain N content, and phenol oxidase.  Furthermore, CSR and NUE negatively correlated with humin acid and soil C:P and N:P ratios.  The technique for order of preference by similarity to ideal solution (TOPSIS) showed that NPKM3 treatment was the optimum strategy for improving CSR and NUE.  Therefore, substituting 70% of chemical fertilizer with organic manure could be the best management option for increasing CSR and NUE in the paddy fields of southern China

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2. Interaction of soil microbial communities and phosphorus fractions under long-term fertilization in paddy soil 
Muhammad QASWAR, Waqas AHMED, HUANG Jing, LIU Kai-lou, ZHANG Lu, HAN Tian-fu, DU Jiang-xue, Sehrish ALI, Hafeez UR-RAHIM, HUANG Qing-hai, ZHANG Hui-min
Journal of Integrative Agriculture    2022, 21 (7): 2134-2144.   DOI: 10.1016/S2095-3119(21)63733-4
摘要133)      PDF    收藏
Understanding the impact of biological activities on the soil phosphorus (P) distribution under long-term fertilizer application can facilitate better soil P fertility management.  Therefore, the primary objectives of this study were to investigate the effect of long-term (since 1981) fertilizer application on the soil P fractions and microbial community and to evaluate correlations between the microbial community structure and P distribution.  The following treatments were implemented in a long-term field trial: no fertilization (CK), inorganic N and K (NK), inorganic P and K (PK), inorganic N, P and K (NPK) and manure+NPK (MNPK) fertilization.  The study showed that the soil pH, soil organic carbon and total and available N and P concentrations were considerably higher in the MNPK treatment than in the CK treatment.  The soil microbial biomass C, N and P concentrations were also significantly higher in the MNPK treatment than in the CK treatment.  Among fertilization treatments, the β-1,4-glucosidase, α-1,4-glucosidase, urease, acid phosphatase and phosphodiesterase activities were the highest in the MNPK treatment.  Compared to inorganic fertilization, the MNPK treatment increased the labile soil P fractions and decreased the residual soil P concentration.  Continuous fertilization significantly affected the soil microbial composition.  The total phospholipid fatty acid (PLFA) concentrations in the NK, PK, NPK and MNPK treatments were 23.3, 43.1, 48.7 and 87.7% higher, respectively, than in the CK treatment.  A significant correlation was observed between the microbial community and soil P fractions.  Moreover, the aggregated boosted tree (ABT) model showed that among the various soil biochemical properties, the total PLFA concentration was the factor that most influenced the active P pool, accounting for 35.4% of the relative influence of all soil biochemical properties examined.  These findings reveal that combined manure and inorganic fertilizer application is a better approach than applying inorganic fertilizer alone for sustaining long-term P fertility by mediating soil biological activity.


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3. Dynamics of organic carbon and nitrogen in deep soil profile and crop yields under long-term fertilization in wheat-maize cropping system
Muhammad QASWAR, LI Dong-chu, HUANG Jing, HAN Tian-fu, Waqas AHMED, Sehrish ALI, Muhammad Numan KHAN, Zulqarnain Haider KHAN, XU Yong-mei, LI Qian, ZHANG Hui-min, WANG Bo-ren, Ahmad TAUQEER
Journal of Integrative Agriculture    2022, 21 (3): 826-839.   DOI: 10.1016/S2095-3119(20)63501-8
摘要129)      PDF    收藏
 

该研究系统阐述了长期不同施肥对土壤剖面SOC和N库的影响,通过冗余分析了SOC团聚体组分及影响因素,三维表面分析深入理解剖面SOC和N库对作物产量的影响。与化肥处理相比,长期施用有机肥通过增加表土层 (0–20 cm)SOC输入、SOC储量、TN储量和土壤pH值来提高作物产量。不同施肥处理的SOC团聚体组分存在差异,所有处理SOC团聚体组分高低依次为矿物结合有机碳(mSOC)>粗自由颗粒有机碳(cfPOC)>物理保护有机碳(iPOC)>细自由颗粒有机碳(ffPOC)。施用有机肥处理的所有SOC组分含量均显著高于化肥处理。在不同SOC团聚体组分中,ffPOC对不同施肥处理的敏感性最高。单施有机肥(M)和有机无机肥配施(NPKM)显著提高了表层(0-20 cm)SOC和TN含量,与化肥处理相比,M和NPKM处理降低了深层土壤(80-100 cm)中的SOC和N含量,有利于减少养分垂直流动,从而减少养分的淋溶损失。


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4. 通过E1及其同源基因共沉默创制超早熟大豆新材料
LIU Li-feng, GAO Le, ZHANG Li-xin, CAI Yu-peng, SONG Wen-wen, CHEN Li, YUAN Shan, WU Ting-ting, JIANG Bing-jun, SUN Shi, WU Cun-xiang, HOU Wen-sheng, HAN Tian-fu
Journal of Integrative Agriculture    2022, 21 (2): 326-335.   DOI: 10.1016/S2095-3119(20)63391-3
摘要230)      PDF    收藏

大豆是典型的短日照作物,对光周期敏感性决定大豆品种的适宜种植区域。在光周期调控的大豆开花途径中,开花抑制因子E1起主导作用。E1LaE1LbE1的同源基因,功能与E1类似。本研究利用RNA干扰(RNAi)技术在大豆品种自贡冬豆中同时沉默E1E1La/b基因。结果显示,与受体品种自贡冬豆相比,RNAi株系开花期和成熟期大幅度提前,光周期敏感性明显下降。在RNAi超早熟株系中,开花抑制基因GmFT4的表达水平显著下降,开花促进基因GmFT2a/GmFT5a的表达水平明显上升。生育期组鉴定结果显示,自贡冬豆的生育期组属于MG VIII为极晚熟品种,RNAi株系的生育期组为MG 000属超早熟新种质,可在中国最北部(53.5°N)的漠河市北极村种植。本研究验证E1E1La/b大豆开花期和成熟期的负调控作用创制出超早熟大豆新材料,为显著钝化大豆品种的光周期敏感性,大幅度缩短生育期,实现南方大豆种质资源在北方大豆主产区的有效利用,拓宽寒地区大豆的遗传基础提供了新的途径。

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5.
Change of soil productivity in three different soils after long-term field fertilization treatments
LIU Kai-lou, HAN Tian-fu, HUANG Jing, ZHANG Shui-qing, GAO Hong-jun, ZHANG Lu, Asad SHAH, HUANG Shao-min, ZHU Ping, GAO Su-duan, MA Chang-bao, XUE Yan-dong, ZHANG Hui-min
Journal of Integrative Agriculture    2020, 19 (3): 848-858.   DOI: 10.1016/S2095-3119(19)62742-5
摘要118)      PDF    收藏
Soil productivity (SP) without external fertilization influence is an important indicator for the capacity of a soil to support crop yield. However, there have been difficulties in estimating values of SPs for soils after various long-term field treatments because the treatment without external fertilization is used but is depleted in soil nutrients, leading to erroneous estimation. The objectives of this study were to estimate the change of SP across different cropping seasons using pot experiments, and to evaluate the steady SP value (which is defined by the basal contribution of soil itself to crop yield) after various longterm fertilization treatments in soils at different geographical locations. The pot experiments were conducted in Jinxian of Jiangxi Province with paddy soil, Zhengzhou of Henan Province with fluvo-aquic soil, and Gongzhuling of Jilin Province with black soils, China. Soils were collected after long-term field fertilization treatments of no fertilizer (control; CK-F), chemical fertilizer (NPK-F), and combined chemical fertilizer with manure (NPKM-F). The soils received either no fertilizer (F0) or chemical fertilizer (F1) for 3–6 cropping seasons in pots, which include CK-P (control; no fertilizer from long-term field experiments for pot experiments), NPK-P (chemical fertilizer from long-term field experiments for pot experiments), and NPKM-P (combined chemical and organic fertilizers from long-term field experiments for pot experiments). The yield data were used to calculate SP values. The initial SP values were high, but decreased rapidly until a relatively steady SP was achieved at or after about three cropping seasons for paddy and fluvo-aquic soils. The steady SP values in the third cropping season from CK-P, NPK-P, and NPKM-P treatments were 37.7, 44.1, and 50.0% in the paddy soil, 34.2, 38.1, and 50.0% in the fluvo-aquic soil, with the highest value observed in the NPKM-P treatment for all soils. However, further research is required in the black soils to incorporate more than three cropping seasons. The partial least squares path mode (PLS-PM) showed that total N (nitrogen) and C/N ratio (the ratio of soil organic carbon and total N) had positive effects on the steady SP for all three soils. These findings confirm the significance of the incorporation of manure for attaining high soil productivity. Regulation of the soil C/N ratio was the other main factor for steady SP through fertilization management.
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6. Principles and practices of the photo-thermal adaptability improvement in soybean
ZHANG Li-xin, LIU Wei, Mesfin Tsegaw, XU Xin, QI Yan-ping, Enoch Sapey, LIU Lu-ping, WU Ting-ting, SUN Shi, HAN Tian-fu
Journal of Integrative Agriculture    2020, 19 (2): 295-310.   DOI: 10.1016/S2095-3119(19)62850-9
摘要205)      PDF    收藏
As a short-day (SD) and thermophilic plant, soybean (Glycine max (L.) Merr.) is sensitive to photo-thermal conditions.  This characteristic severely limits the cultivation range of a given soybean cultivar and affects the performances of agronomic traits such as yield, plant architectures, and seed quality.  Therefore, understanding the mechanism of photo-thermal sensitivity will provide a theoretical basis for soybean improvement.  In this review, we introduce the advances in physiological, genetic, and molecular researches in photoperiodism of soybean, and progress in the improvement of the photo-thermal adaptability.  We also summarize the photo-thermal conditions and characteristics of widely-planted soybean cultivars of major production regions in China.  Furthermore, we proposed a novel concept of ‘ecotyping’ and the strategies for widely-adapted soybean cultivar breeding.  This review provides an important guide for improving the adaptability of soybean.
 
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7. GmNMH7, a MADS-box transcription factor, inhibits root development and nodulation of soybean (Glycine max [L.] Merr.)
MA Wen-ya, LIU Wei, HOU Wen-sheng, SUN Shi, JIANG Bing-jun, HAN Tian-fu, FENG Yong-jun, WU Cun-xiang
Journal of Integrative Agriculture    2019, 18 (3): 553-562.   DOI: 10.1016/S2095-3119(18)61992-6
摘要267)      PDF(pc) (1031KB)(220)    收藏
As an important food crop and oil crop, soybean (Glycine max [L.] Merr.) is capable of nitrogen-fixing by root nodule.  Previous studies showed that GmNMH7, a transcription factor of MADS-box family, is associated with nodule development, but its specific function remained unknown.  In this study, we found that GmNMH7 was specifically expressed in root and nodule and the expression pattern of GmNMH7 was similar to several genes involved in early development of nodule (GmENOD40-1, GmENOD40-2, GmNFR1a, GmNFR5a, and GmNIN) after rhizobia inoculation.  The earlier expression peak of GmNMH7 compared to the other genes (GmENOD40-1, GmENOD40-2, GmNFR1a, GmNFR5a, and GmNIN) indicated that the gene is related to the nod factor (NF) signaling pathway and functions at the early development of nodule.  Over-expression of GmNMH7 in hairy roots significantly reduced the nodule number and the root length.  In the transgenic hairy roots, over-expression of GmNMH7 significantly down-regulated the expression levels of GmENOD40-1, GmENOD40-2, and GmNFR5α.  Moreover, the expression of GmNMH7 could respond to abscisic acid (ABA) and gibberellin (GA3) treatment in the root of Zigongdongdou seedlings.  Over-expressing GmNMH7 gene reduced the content of ABA, and increased the content of GA3 in the positive transgenic hairy roots.  Therefore, we concluded that GmNMH7 might participate in the NF signaling pathway and negatively regulate nodulation probably through regulating the content of GA3.
 
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8. Maize-soybean strip intercropping: Achieved a balance between high productivity and sustainability
DU Jun-bo, HAN Tian-fu, GAI Jun-yi, YONG Tai-wen, SUN Xin, WANG Xiao-chun, YANG Feng, LIU Jiang, SHU Kai, LIU Wei-guo, YANG Wen-yu
Journal of Integrative Agriculture    2018, 17 (04): 747-754.   DOI: 10.1016/S2095-3119(17)61789-1
摘要1056)      PDF    收藏
Intercropping is one of the most vital practice to improve land utilization rate in China that has limited arable land resource. However, the traditional intercropping systems have many disadvantages including illogical field lay-out of crops, low economic value, and labor deficiency, which cannot balance the crop production and agricultural sustainability. In view of this, we developed a novel soybean strip intercropping model using maize as the partner, the regular maize-soybean strip intercropping mainly popularized in northern China and maize-soybean relay-strip intercropping principally extended in southwestern China. Compared to the traditional maize-soybean intercropping systems, the main innovation of field lay-out style in our present intercropping systems is that the distance of two adjacent maize rows are shrunk as a narrow strip, and a strip called wide strip between two adjacent narrow strips is expanded reserving for the growth of two or three rows of soybean plants.  The distance between outer rows of maize and soybean strips are expanded enough for light use efficiency improvement and tractors working in the soybean strips.  Importantly, optimal cultivar screening and increase of plant density achieved a high yield of both the two crops in the intercropping systems and increased land equivalent ratio as high as 2.2.  Annually alternative rotation of the adjacent maize- and soybean-strips increased the grain yield of next seasonal maize, improved the absorption of nitrogen, phosphorus, and potasium of maize, while prevented the continuous cropping obstacles.  Extra soybean production was obtained without affecting maize yield in our strip intercropping systems, which balanced the high crop production and agricultural sustainability.
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9. Constitutive expression of feedback-insensitive cystathionine γ-synthase increases methionine levels in soybean leaves and seeds
YU Yang, HOU Wen-sheng, Yael Hacham, SUN Shi, WU Cun-xiang, Ifat Matityahu, SONG Shi-kui, Rachel Amir, HAN Tian-fu
Journal of Integrative Agriculture    2018, 17 (01): 54-62.   DOI: 10.1016/S2095-3119(16)61599-X
摘要715)      PDF    收藏
Soybean (Glycine max (L.) Merr.) is a major crop that provides plant-origin protein and oil for humans and livestock.  Although the soybean vegetative tissues and seeds provide a major source of high-quality protein, they suffer from low concentration of an essential sulfur-containing amino acid, methionine, which significantly limits their nutritional quality.  The level of methionine is mainly controlled by the first unique enzyme of methionine synthesis, cystathione γ-synthase (CGS).  Aiming to elevate methionine level in vegetative tissues and seeds, we constitutively over-expressed a feedback-insensitive
Arabidopsis CGS (AtD-CGS) in soybean cultivars, Zigongdongdou (ZD) and Jilinxiaoli 1 (JX).  The levels of soluble methionine increased remarkably in leaves of transgenic soybeans compared to wild-type plants (6.6- and 7.3-fold in two transgenic ZD lines, and 3.7-fold in one transgenic JX line).  Furthermore, the total methionine contents were significantly increased in seeds of the transgenic ZD lines (1.5- to 4.8-fold increase) and the transgenic JX lines (1.3- to 2.3-fold increase) than in the wild type.  The protein contents of the transgenic soybean seeds were significantly elevated compared to the wild type, suggesting that the scarcity of methionine in soybeans may limit protein accumulation in soybean seeds.  The increased protein content did not alter the profile of major storage proteins in the seeds.  Generally, this study provides a promising strategy to increase the levels of methionine and protein in soybean through the breeding programs.  
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10. Analysis of the independent- and interactive-photo-thermal effects on soybean flowering
WU Ting-ting, LI Jin-yu, WU Cun-xiang, SUN Shi, MAO Ting-ting, JIANG Bing-jun, HOU Wen-sheng, HAN Tian-fu
Journal of Integrative Agriculture    2015, 14 (4): 622-632.   DOI: 10.1016/S2095-3119(14)60856-X
摘要2050)      PDF    收藏
Soybean (Glycine max (L.) Merr.) is a typical short-day and warm season plant, and the interval between emergence and flowering has long been known to be regulated by environmental factors, primarily photoperiod and temperature. While the effects of photoperiod and temperature on soybean flowering have been extensively studied, a dissection of the component photo-thermal effects has not been documented for Chinese germplasm. Our objective of the current study was to evaluate the independent- and interactive-photo-thermal responses of 71 cultivars from 6 ecotypes spanning the soybean production regions in China. These cultivars were subjected in pot experiments to different temperature regimes by planting in spring (low temperature (LT)) and summer (high temperature (HT)), and integrating with short day (SD, 12 h), natural day (ND, variable day-length), and long day (LD, 16 h) treatments over two years. The duration of the vegetative phase from emergence to first bloom (R1) was recorded, and the photo-thermal response was calculated. The outcome of this characterization led to the following conclusions: (1) There were significant differences in photo-thermal response among the different ecotypes. High-latitude ecotypes were less sensitive to the independent- and interactive-photo-thermal effects than low-latitude ecotypes; and (2) there was an interaction between photoperiod and temperature, with the effect of photoperiod on thermal sensitivity being greater under the LD than the SD condition, and with the effect of temperature on photoperiodic sensitivity being greater under the LT than the HT condition. The strengths and limitations of this study are discussed in terms of implications for current knowledge and future research directions. The study provides better understanding of photo-thermal effects on flowering in soybean genotypes from different ecotypes throughout China and of the implications for their adaptation more broadly.
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11. Construction of Two Suppression Subtractive Hybridization Libraries and Identification of Salt-Induced Genes in Soybean
LI Liang, WANG Wei-qi, HAN Tian-fu, HOU Wen-sheng
Journal of Integrative Agriculture    2012, 12 (7): 1075-1085.   DOI: 10.1016/S1671-2927(00)8632
摘要1467)      PDF    收藏
Soybean is planted worldwide and its productivity is significantly hampered by salinity. Development of salt tolerant cultivars is necessary for promoting soybean production. Despite wealth of information generated on salt tolerance mechanism, its basics still remain elusive. A continued effort is needed to understand the salt tolerance mechanism in soybean using suitable molecular tools. To better understand the molecular basis of the responses of soybean to salt stress and to get an enrichment of critical salt stress responsive genes in soybean, suppression subtractive hybridization libraries (SSH) are constructed for the root tissue of two cultivated soybean genotypes, one was tolerant and the other was sensitive to salt stress. To compare the responses of plants in salt treatment and non-treatment, SSH1 was constructed for the salt-tolerant cultivar Wenfeng 7 and SSH2 was constructed for the salt-sensitive cultivar Union. From the two SSH cDNA libraries, a total of 379 high quality ESTs were obtained. These ESTs were then annotated by performing sequence similarity searches against the NCBI nr (National Center for Biotechnology Information protein non-redundant) database using the BLASTX program. Sixty-three genes from SSH1 and 49 genes from SSH2 could be assigned putative function. On the other hand, 25 ESTs of SSH1 which may be not the salt tolerance-related genes were removed by comparing and analyzing the ESTs from the two SSH libraries, which increased the proportion of the genes related to salt tolerance in SSH1. These results suggested that the novel way could realize low background of SSH and high level enrichment of target cDNAs to some extent.
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