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A rapid and visual detection method for porcine deltacoronavirus with single-copy sensitivity based on the CRISPR/Cas12a assay
Zezhao Cao, Zi Li, Kaikai Jin, Zanheng Huang, Ruijie Hu, Junchao Shi, Huabo Yu, Gaili Wang, Wenqi He, Hualei Wang, Yungang Lan, Haili Zhang
2026, 25 (4): 1736-1739.   DOI: 10.1016/j.jia.2025.07.030
Abstract74)      PDF in ScienceDirect      
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Point-of-care antigen detection for porcine deltacoronavirus: Colloidal gold and fluorescent immunochromatographic test strips
Zezhao Cao, Junchao Shi, Ruijie Hu, Jun Xue, Gaili Wang, Zi Li, Huabo Yu, Wei Liu, Wenqi He, Hualei Wang, Haili Zhang, Yungang Lan
2026, 25 (1): 394-397.   DOI: 10.1016/j.jia.2025.08.001
Abstract166)      PDF in ScienceDirect      
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Identification of Pi-efficient elite allele of the TaPHT1;6 gene and development of its functional marker in common wheat (Triticum aestivum L.)
Huanting Shi, Chuang Lou, Jinfeng Wang, Dianqi Dong, Longfei Yang, Gezi Li, Zhiqiang Tian, Qiaoxia Han, Pengfei Wang, Guozhang Kang
2025, 24 (5): 1646-1655.   DOI: 10.1016/j.jia.2024.09.009
Abstract254)      PDF in ScienceDirect      
One of agriculture’s major challenges is the low efficiency of phosphate (Pi) use, which leads to increased costs, harmful environmental impacts, and the depletion of phosphorus (P) resources.  The TaPHT1;6 gene, which encodes a high-affinity Pi transporter (PHT), plays a crucial role in Pi absorption and transport.  In this study, the promoter and coding regions of three TaPHT1;6 gene copies on chromosomes 5A, 5B, and 5D were individually amplified and sequenced from 167 common wheat (Triticum aestivum L.) cultivars.  Sequence analysis revealed 16 allelic variation sites within the promoters of TaPHT1;6-5B among these cultivars, forming three distinct haplotypes: Hap1, Hap2, and Hap3.  Field trials were conducted over two years to compare wheat genotypes with these haplotypes, focusing on assessing plant dry weight, grain yield, P content, Pi fertilizer absorption efficiency, and Pi fertilizer utilization efficiency.  Results indicated that Hap3 represented the favored Pi-efficient haplotype.  Dual-luciferase reporter assay demonstrated that the Hap3 promoter, carrying the identified allelic variation sites, exhibited higher gene-driven capability, leading to increased expression levels of the TaPHT1;6-5B gene.  We developed a distributed cleaved amplified polymorphic site marker (dCAPS-571) to distinguish Hap3 from the other two haplotypes based on these allelic variation sites, presenting an opportunity for breeding Pi-efficient wheat cultivars.  This study successfully identified polymorphic sites on TaPHT1;6-5B associated with Pi efficiency and developed a functional molecular marker to facilitate future breeding endeavors.



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Changes in milk fat globule membrane proteins along lactation stage of Laoshan dairy goat

Chuozi Liang, Zhongna Yu, Guangming Zhu, Yixuan Li, Xueheng Sun, Hongning Jiang, Qijing Du, Rongbo Fan, Jun Wang, Yongxin Yang, Rongwei Han
2024, 23 (5): 1737-1748.   DOI: 10.1016/j.jia.2024.03.080
Abstract185)      PDF in ScienceDirect      

The milk fat globule membrane (MFGM) is a complex structure with numerous functions, and its composition is affected by many factors.  There have been few systematic investigations on goat MFGM proteome profiling during lactation.  Individual milk samples from 15 healthy dairy goats were obtained at six lactation time points for investigation of the MFGM proteome using both data-independent acquisition (DIA) and data-dependent acquisition (DDA) proteomics techniques combined with multivariate statistical analysis.  Using the DIA method, 890 variably abundant MFGM proteins were discovered throughout the lactation cycle.  From 1 to 240 d, butyrophilin subfamily 1 member A1, lipoprotein lipase, perilipin-2, and adipose triglyceride lipase were upregulated, while APOE, complement C3, clusterin, and IgG were downregulated.  Furthermore, from 1 to 90 d, annexin A1, annexin A2, and antithrombin-III were downregulated, then upregulated by d 240.  Albumin had a high degree of connectedness, indicating that it was a key protein, according to protein–protein interaction research.  Overall, our findings gave new insights into the biological features of MFGM protein in goat milk throughout lactation, which may aid in the creation of specialized MFGM products and infant formula.

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Changes in milk fat globule membrane proteins along lactation stage of Laoshan dairy goat
Chuozi Liang, Zhongna Yu, Guangming Zhu, Yixuan Li, Xueheng Sun, Hongning Jiang, Qijing Du, Rongbo Fan, Jun Wang, Yongxin Yang, Rongwei Han
DOI: 10.1016/j.jia.2024.03.080 Online: 25 April 2024
Abstract180)      PDF in ScienceDirect      
The milk fat globule membrane (MFGM) is a complex structure with numerous functions, and its composition is affected by a number of circumstances. There have been few systematic investigations on goat MFGM proteome profiling during lactation. Individual milk samples from 15 healthy dairy goats were obtained at six lactation time points for investigation of the MFGM proteome using both data-independent acquisition (DIA) and data-dependent acquisition (DDA) proteomics techniques combined with multivariate statistical analysis. Using the DIA method, 890 variably abundant MFGM proteins were discovered throughout the lactation cycle. From 1 to 240 d, butyrophilin subfamily 1 member A1, lipoprotein lipase, perilipin-2, and adipose triglyceride lipase were upregulated, while APOE, complement C3, clusterin, and IgG were downregulated. Furthermore, from 1 to 90 d, annexin A1, annexin A2, and antithrombin-III were downregulated, then upregulated by d 240. Albumin had a high degree of connectedness, indicating that it was a key protein, according to protein-protein interaction research. Overall, our findings gave new insights into the biological features of MFGM protein in goat milk throughout lactation, which may aid in the creation of specialized MFGM products and infant formula.
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A method for rapid field monitoring of boll opening rate for cotton based on digital imagery
Chenyu Xiao, Yukun Wang, Haohao Zhao, A. Egrinya Eneji, Dongyong Xu, Mingwei Du, Xin Du, Qiangzi Li, Xiaoli Tian, Zhaohu Li
DOI: 10.1016/j.jia.2025.07.018 Online: 18 July 2025
Abstract44)      PDF in ScienceDirect      

Chemical defoliation and ripening are a prerequisite for mechanical harvesting of cotton, and the boll opening rate is a critical determinant of timing and rate of defoliates and ripening agents as well as harvest.  Given the low efficiency and poor timeliness of manual determination of boll opening rates, we have developed a rapid method based on digital images.  Field images were collected 7 days before and 7, 14, and 21 days after the application of harvest aids, with the boll opening rates (BOR) varying from 25 to 95%.  We set four shooting heights, five shooting angles and two shooting directions, and a total of 912 original images (each 5,184×3,456 pixels) were obtained.  Actual ground boll opening rates were monitored simultaneously. Each single image was segmented into 500×500 pixels sub-images.  The four deep learning networks were used to identify opened and unopened cotton bolls, and YOLOv5 performed best in balancing recognition time and accuracy.  To address the issue of boundary boll recognition caused by image segmentation, the original images were segmented into 10 different sizes (100, 200, 300, 400, 500, 600, 700, 800, 900, and 1,000 pixels), and YOLOv5 model was then used to identify bolls in each size of the sub-images.  The bounding boxes marking cotton bolls at the same position of two different sizes of sub-images, were combined to obtain new corrected bounding boxes in merged image.   Based on the true values of BOR, the best combination of sub-images is 400×400 pixels with 700×700 pixels.  This combination was used to examine the recognition results of various shooting parameters, and we found that the optimal shooting height for the digital camera was 20-30 cm above the canopy, with a downward angle of 0-30° (BOR higher than 40%) and 15-30° (BOR lower than 40%) from the horizontal and shooting direction parallel to the planting rows.  The method established in this study can enable a less-destructive and rapid detection of BOR in the range of 25 to 95% boll opening rate, with a model R² value >92% and a relative root mean square error <10%, suggesting its high precision and stability for field application.

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