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Fine mapping and characterization of a major QTL for grain length, QGl.cau-2D.1, that has pleiotropic effects in synthetic allohexaploid wheat
Mingming Wang, Jia Geng, Zhe Zhang, Zihan Zhang, Lingfeng Miao, Tian Ma, Jiewen Xing, Baoyun Li, Qixin Sun, Yufeng Zhang, Zhongfu Ni
2024, 23 (9): 2911-2922.   DOI: 10.1016/j.jia.2023.09.009
Abstract152)      PDF in ScienceDirect      
Grain size is one of the determinants of grain yield, and identifying the genetic loci that control grain size will be helpful for increasing grain yield. In our previous study, a quantitative trait locus (QTL) for grain length (GL), QGl.cau-2D.1, was identified from an F2 population developed from the cross between the natural (TAA10) and synthetic (XX329) allohexaploid wheat. In the present study, we mainly fine mapped and validated its genetic effects. To this end, multiple near-isogenic lines (NILs) were obtained through marker-assisted selection with TAA10 as the recurrent parent. The secondary populations derived from 25 heterozygous recombinants were used for fine mapping of QGl.cau-2D.1, and the allele from XX329 significantly increased GL, thousand-grain weight (TGW), total spikelet number per spike (TSN) and spike compactness (SC). Using NILs for XX329 (2D+) and TAA10 (2D−), we determined the genetic and pleiotropic effects of QGl.cau-2D.1. The target sequences were aligned with the wheat reference genome RefSeq v2.1 and spanned an ~0.9 Mb genomic region. TraesCS2D03G0114900 (ortholog of Os03g0594700) was predicted as the candidate gene based on whole-genome re-sequencing and expression analyses. In summary, the map-based cloning of QGl.cau-2D.1 will be useful for improving grain weight with enhanced GL and TSN.
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Fhb9, a major QTL for Fusarium head blight resistance improvement in wheat
Fuping Zhang, Hongjun Zhang, Jilu Liu, Xiaomeng Ren, Yanpeng Ding, Fangyao Sun, Zhenzhen Zhu, Xi He, Yang Zhou, Guihua Bai, Zhongfu Ni, Qixin Sun, Zhenqi Su
DOI: 10.1016/j.jia.2024.03.045 Online: 11 April 2024
Abstract70)      PDF in ScienceDirect      
Fusarium head blight (FHB), mainly caused by Fusarium graminearum, is one of the most devastating diseases of wheat worldwide. Identification and validation of major quantitative trait loci (QTLs) for FHB resistance without negative effects on agronomic traits is critical to success in breeding FHB-resistant cultivars.  In this study, a stable major QTL on chromosome arm 2DL was identified by evaluating a recombinant inbred line (RIL) population derived from Shi4185×Shijiazhuang 8 in both field and greenhouse experiments.  QTL mapping and pedigree analyses indicated that the 2DL QTL is the same QTL as QFhb-2DL previously identified in Ji5265, therefore, designated Fhb9.  Four kompetitive amplicon sequence polymorphism (KASP) markers were developed based on exome capture sequencing data to enhance marker density in the Fhb9 region, and it was delimited to an interval between single nucleotide polymorphism (SNP) markers KASP-12056 (533.8) and KASP-525 (525.9 Mb) explained 26.0-30.1% of the phenotypic variation.  Analysis of the geographic distribution of the Fhb9 resistance allele suggested that it originated from Huang-Huai winter wheat region in China, and very low frequency of Fhb9 in modern Chinese cultivars reveals that it has not been widely deployed in breeding programs.  Field and greenhouse evaluation of yield-related traits of near-isogenic lines (NILs) contrasting in Fhb9 alleles indicated that Fhb9 resistance allele did not show any adverse effects on those traits.  Fhb9 showed an additive effect on enhancing FHB resistance with Fhb1.  Therefore, Fhb9 is a valuable major QTL for improving FHB resistance in wheat and the near-diagnostic markers developed in this study will facilitate its deployment in wheat breeding programs.
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