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Identification, evolution, expression and protein interaction analysis of genes encoding B-box zinc-finger proteins in maize
XU Xiao-hui, LI Wen-lan, YANG Shu-ke, ZHU Xiang-zhen, SUN Hong-wei, LI Fan, LU Xing-bo, CUI Jin-jie
2023, 22 (2): 371-388.   DOI: 10.1016/j.jia.2022.08.091
Abstract526)      PDF in ScienceDirect      

The B-box (BBX) family of proteins consists of zinc-finger transcription factors with one or two highly conserved B-box motifs at their N-termini.  BBX proteins play crucial roles in various aspects of plant growth and development, including seedling photomorphogenesis, shade avoidance, flowering time, and biotic and abiotic stress responses.  Previous studies have identified many different BBXs from several plant species, although the BBX family members in maize are largely unknown.  Genome-wide identification and comprehensive analysis of maize BBX (ZmBBX) expression and interaction networks would therefore provide valuable information for understanding their functions.  In this study, 36 maize BBXs in three major clades were identified.  The ZmBBXs within a given clade were found to share similar domains, motifs, and genomic structures.  Gene duplication analyses revealed that the expansion of BBX proteins in maize has mainly occurred by segmental duplication.  The expression levels of ZmBBXs were analyzed in various organs and tissues, and under different abiotic stress conditions.  Protein–protein interaction networks of ZmBBXs were established using bioinformatic tools and verified by bimolecular fluorescence complementation (BiFC) assays.  Our findings can facilitate a greater understanding of the complexity of the ZmBBX family and provide novel clues for unravelling ZmBBX protein functions

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The biotypes and host shifts of cotton-melon aphids Aphis gossypii in northern China
ZHANG Shuai, LUO Jun-yu, WANG Li, WANG Chun-yi, Lü Li-min, ZHANG Li-juan, ZHU Xiang-zhen, CUI Jin-jie
2018, 17 (09): 2066-2073.   DOI: 10.1016/S2095-3119(17)61817-3
Abstract493)      PDF in ScienceDirect      
Aphis gossypii is a globally distributed species and therefore has a highly variable life cycle.  Populations of A. gossypii in northern China exhibit greater genotypic diversity and a broader host range, yet the details of life cycles of different biotypes is still unclear.  In this study, the Cytb and 16S gene regions of A. gossypii collected from 5 common summer hosts and 4 primary hosts were analyzed.  A total of 57 haplotypes were obtained from 1 046 individual A. gossypii sequences.  The sequence included 44 variable sites, 27 of which were parsimony informative sites and 17 of which were singleton variable sites.  The most frequent 3 haplotypes were found in 896 individuals, representing a total of 85.7% of all individuals and 36 haplotypes were found in 1 individual.  A neighbor-joining tree was constructed using 21 haplotypes that were found in more than 2 individuals.  Considering the individual host plant, 5 biotypes were identified.  Type 1 corresponded exactly to the cucurbit host-race and the other 4 biotypes were found as cotton host-races.  Type 3 was the most abundant biotype in cotton fields in northern China.
 
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Effects of soil salinity on rhizosphere soil microbes in transgenic Bt cotton fields
LUO Jun-yu, ZHANG Shuai, ZHU Xiang-zhen, LU Li-min, WANG Chun-yi, LI Chun-hua, CUI Jin-jie, ZHOU Zhi-guo
2017, 16 (07): 1624-1633.   DOI: 10.1016/S2095-3119(16)61456-9
Abstract945)      PDF in ScienceDirect      
    With increased cultivation of transgenic Bacillus thuringiensis (Bt) cotton in the saline alkaline soil of China, assessments of transgenic crop biosafety have focused on the effects of soil salinity on rhizosphere microbes and Bt protein residues. In 2013 and 2014, investigations were conducted on the rhizosphere microbial biomass, soil enzyme activities and Bt protein contents of the soil under transgenic Bt cotton (variety GK19) and its parental non-transgenic cotton (Simian 3) cultivated at various salinity levels (1.15, 6.00 and 11.46 dS m−1). Under soil salinity stress, trace amounts of Bt proteins were observed in the Bt cotton GK19 rhizosphere soil, although the protein content increased with cotton growth and increased soil salinity levels. The populations of slight halophilic bacteria, phosphate solubilizing bacteria, ammonifying bacteria, nitrifying bacteria and denitrifying bacteria decreased with increased soil salinity in the Bt and non-Bt cotton rhizosphere soil, and the microbial biomass carbon, microbial respiration and soil catalase, urease and alkaline phosphatase activity also decreased. Correlation analyses showed that the increased Bt protein content in the Bt cotton rhizosphere soil may have been caused by the slower decomposition of soil microorganisms, which suggests that salinity was the main factor influencing the relevant activities of the soil microorganisms and indicates that Bt proteins had no clear adverse effects on the soil microorganisms. The results of this study may provide a theoretical basis for risk assessments of genetically modified cotton in saline alkaline soil.
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