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An entirely new approach based on remote sensing data to calculate the nitrogen nutrition index of winter wheat
ZHAO Yu, WANG Jian-wen, CHEN Li-ping, FU Yuan-yuan, ZHU Hong-chun, FENG Hai-kuan, XU Xin-gang, LI Zhen-hai
2021, 20 (
9
): 2535-2551. DOI:
10.1016/S2095-3119(20)63379-2
Abstract
(
215
)
PDF in ScienceDirect
The nitrogen nutrition index (NNI) is a reliable indicator for diagnosing crop nitrogen (N) status. However, there is currently no specific vegetation index for the NNI inversion across multiple growth periods. To overcome the limitations of the traditional direct NNI inversion method (NNI
T1
) of the vegetation index and traditional indirect NNI inversion method (NNI
T2
) by inverting intermediate variables including the aboveground dry biomass (AGB) and plant N concentration (PNC), this study proposed a new NNI remote sensing index (NNI
RS
). A remote-sensing-based critical N dilution curve (N
c_RS
) was set up directly from two vegetation indices and then used to calculate NNIRS. Field data including AGB, PNC, and canopy hyperspectral data were collected over four growing seasons (2012–2013 (Exp.1), 2013–2014 (Exp. 2), 2014–2015 (Exp. 3), 2015–2016 (Exp. 4)) in Beijing, China. All experimental datasets were cross-validated to each of the NNI models (NNI
T1
, NNI
T2
and NNI
RS
). The results showed that: (1) the NNI
RS
models were represented by the standardized leaf area index determining index (sLAIDI) and the red-edge chlorophyll index (CI
red edge
) in the form of NNI
RS
=CI
red edge
/(a×sLAIDI
b
), where “a” equals 2.06, 2.10, 2.08 and 2.02 and “b” equals 0.66, 0.73, 0.67 and 0.62 when the modeling set data came from Exp.1/2/4, Exp.1/2/3, Exp.1/3/4, and Exp.2/3/4, respectively; (2) the NNI
RS
models achieved better performance than the other two NNI revised methods, and the ranges of
R
2
and RMSE were 0.50–0.82 and 0.12–0.14, respectively; (3) when the remaining data were used for verification, the NNI
RS
models also showed good stability, with RMSE values of 0.09, 0.18, 0.13 and 0.10, respectively. Therefore, it is concluded that the NNI
RS
method is promising for the remote assessment of crop N status.
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Winter wheat yield estimation based on assimilated Sentinel-2 images with the CERES-Wheat model
LIU Zheng-chun, WANG Chao, BI Ru-tian, ZHU Hong-fen, HE Peng, JING Yao-dong, YANG Wu-de
2021, 20 (
7
): 1958-1968. DOI:
10.1016/S2095-3119(20)63483-9
Abstract
(
119
)
PDF in ScienceDirect
Assimilating Sentinel-2 images with the CERES-Wheat model can improve the precision of winter wheat yield estimates at a regional scale. To verify this method, we applied the ensemble Kalman filter (EnKF) to assimilate the leaf area index (LAI) derived from Sentinel-2 data and simulated by the CERES-Wheat model. From this, we obtained the assimilated daily LAI during the growth stage of winter wheat across three counties located in the southeast of the Loess Plateau in China: Xiangfen, Xinjiang, and Wenxi. We assigned LAI weights at different growth stages by comparing the improved analytic hierarchy method, the entropy method, and the normalized combination weighting method, and constructed a yield estimation model with the measurements to accurately estimate the yield of winter wheat. We found that the changes of assimilated LAI during the growth stage of winter wheat strongly agreed with the simulated LAI. With the correction of the derived LAI from the Sentinel-2 images, the LAI from the green-up stage to the heading–filling stage was enhanced, while the LAI decrease from the milking stage was slowed down, which was more in line with the actual changes of LAI for winter wheat. We also compared the simulated and derived LAI and found the assimilated LAI had reduced the root mean square error (RMSE) by 0.43 and 0.29 m
2
m
–2
, respectively, based on the measured LAI. The assimilation improved the estimation accuracy of the LAI time series. The highest determination coefficient (
R
2
) was 0.8627 and the lowest RMSE was 472.92 kg ha
–1
in the regression of the yields estimated by the normalized weighted assimilated LAI method and measurements. The relative error of the estimated yield of winter wheat in the study counties was less than 1%, suggesting that Sentinel-2 data with
high spatial-temporal resolution can be assimilated with the CERES-Wheat model to obtain more accurate regional yield estimates.
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Screening of drought resistance indices and evaluation of drought resistance in cotton (
Gossypium hirsutum
L.)
ZOU Jie, HU Wei, LI Yu-xia, HE Jia-qi, ZHU Hong-hai, ZHOU Zhi-guo
2020, 19 (
2
): 495-508. DOI:
10.1016/S2095-3119(19)62696-1
Abstract
(
159
)
PDF in ScienceDirect
Sixteen cotton cultivars widely planted in China were sowed under five different drought concentrations (0, 2.5, 5, 7.5, and 10%) using PEG
6000
to screen the indices of drought resistance identification and explore the drought resistance of different cotton cultivars. Eighteen physiological indices including root, stem, and leaf water contents (RWC, SWC, and LWC), net photosynthetic rate (
P
n
), the maximum photochemical quantum yield (
F
v
/
F
m
), the actual photochemical quantum yield (Φ
PSII
), non-photochemical quenching coefficient (NPQ), leaf water potential (LWP), osmotic potential (Ψs), leaf relative conductivity (REC), leaf proline content (Pro), leaf and root soluble protein contents (LSPC and RSPC), leaf and root malondialdehyde (MDA) contents (LMDA and RMDA), root superoxide dismutase, peroxidase, and catalase activities (RSOD, RPOD, and RCAT) were measured. Results indicated the 18 physiological indices can be converted into five or six independent comprehensive indices by principal component analysis, and nine typical indices (
F
v
/
F
m
, SWC, LWP, Pro, LMDA, RSPC, RMDA, RSOD, and RCAT) screened out by a stepwise regression method could be utilized to evaluate the drought resistance. Moreover, the 16 cotton cultivars were divided into four types: drought sensitive, drought weak sensitive, moderate drought resistant, and drought resistant types. The resistance ability of two selected cotton cultivars (drought resistant cultivar, Dexiamian 1; drought sensitive cultivar, Yuzaomian 9110) with contrasting drought sensitivities were further verified by pot experiment. Results showed that the responses of final cotton biomass, yield, and yield composition to drought were significantly different between the two cultivars. In conclusion, drought resistant cultivar Dexiamian 1 and drought sensitive cultivar Yuzaomian 9110 were screened through hydroponics experiment, which can be used as ideal experimental materials to study the mechanism of different cotton cultivars with contrasting drought sensitivities in response to drought stress.
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Development of peanut varieties with high oil content by in vitro mutagenesis and screening
WANG Jing-shan, SHI Lei, LIU Yue, ZHAO Ming-xia, WANG Xia, QIAO Li-xian, SUI Jiong-ming, LI Guan, ZHU Hong, YU Shan-lin
2020, 19 (
12
): 2974-2982. DOI:
10.1016/S2095-3119(20)63182-3
Abstract
(
148
)
PDF in ScienceDirect
Peanut (
Arachis hypogaea
L.) is an important oil crop globally and high oil content is one of the major targets in peanut breeding programs. Previous studies indicated that the osmotic pressure (OP) of the leaves of peanut plants subjected to drought stress was negatively correlated with kernel oil content. Based on this knowledge, we established a practical and reliable method for creating new peanut varieties with high oil content using
in vitro
mutagenesis and directional OP-based selection. Using embryonic leaflets of peanut variety Huayu 20 as explants, pingyangmycin (PYM) as the mutagen, and hydroxyproline (HYP) as the OP regulator, we developed 15 HYP-tolerant regenerated plants. For each regenerated plant, we selected offspring with oil content>55% (relative to 49.5% for Huayu 20). We developed and released three new peanut varieties with high yield and high oil content from the offspring of the HYP-tolerant regenerated plants. The three new varieties were named as Yuhua 4, Yuhua 9 and Yuhua 14 and their oil contents were 57.7, 61.1 and 59.3%, respectively. The results indicate that
in vitro
mutagenesis with PYM followed by directed screening with HYP is a useful approach for breeding peanut varieties with high oil contents.
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Transcriptome profiling reveals insights into the molecular mechanism of drought tolerance in sweetpotato
ZHU Hong, ZHOU Yuan-yuan, ZHAI Hong, HE Shao-zhen, ZHAO Ning, LIU Qing-chang
2019, 18 (
1
): 9-24. DOI:
10.1016/S2095-3119(18)61934-3
Abstract
(
282
)
PDF in ScienceDirect
Sweetpotato,
Ipomoea batatas
(L.) Lam., is a globally important food crop and usually grown on arid- and semi-arid lands. Therefore, investigating the molecular mechanism of drought tolerance will provide important information for the improvement of drought tolerance in this crop. In this study, transcriptome analysis of the drought-tolerant sweetpotato line Xushu 55-2 was conducted on Illumina HiSeq 2500 platform. A total of 86.69 Gb clean data were generated and assembled into 2 671 693 contigs, 222 073 transcripts, and 73 636 unigenes. In total, 11 359 differentially expressed genes (DEGs) were identified after PEG6000 treatment, in which 7 666 were up-regulated and 3 693 were down-regulated. Of the 11 359 DEGs, 10 192 DEGs were annotated in at least one database, and the remaining 1 167 DEGs were unknown. Abscisic acid (ABA), ethylene (ETH), and jasmonic acid (JA) signalling pathways play a major role in drought tolerance of sweetpotato. Drought-inducible transcription factors were identified, some of which have been reported to be associated with drought tolerance and others are unknown in plants. In addition, 7 643 SSRs were detected. This study not only reveals insights into the molecular mechanism of drought tolerance in sweetpotato but also provides the candidate genes involved in drought tolerance of this crop.
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Effect of ploidy level on expression of lycopene biosynthesis genes and accumulation of phytohormones during watermelon (
Citrullus lanatus
) fruit development and ripening
DOU Jun-ling, YUAN Ping-li, ZHAO Sheng-jie, HE Nan, ZHU Hong-ju, GAO Lei, JI Wan-li, LU Xuqiang, LIU Wen-ge
2017, 16 (
09
): 1956-1967. DOI:
10.1016/S2095-3119(16)61618-0
Abstract
(
732
)
PDF in ScienceDirect
The difference between lycopene and phytohormone levels among diploid, triploid and tetraploid plants of two watermelon cultivars during fruit growth and ripening was studied. The expression pattern of five genes (phytoene synthase (
PSY1
), phytoene desaturase (
PDS
), ζ-carotene desaturase (
ZDS
), carotenoid isomerase (
CRTISO
), and lycopene β-cyclase (
LCYB
)) was analyzed in details. In red-fleshed cultivar Mimei, lycopene content increased rapidly from 25 to 35 days after pollination (DAP), and then decreased at 40 DAP. Triploid and tetraploid fruit had higher levels of lycopene than diploid. Moreover, triploid tended to contain more lycopene than tetraploid during fruit growth and ripening stages. However, little amount of lycopene (0–2 mg kg
–1
fresh weight (FW)) in yellow-fleshed cultivar Huangmei was found during all fruit development stages. In Mimei, transcript level of PSY1 was generally higher than the other four genes, and
LCYB
gene expression was the lowest among all five genes being tested.
PSY1
,
CRTISO
and
LCYB
genes showed higher transcript levels in polyploid than in diploid fruit. By contrast, in Huangmei, transcript level of
LCYB
was not the lowest, but only lower than that of
PSY1
.
PSY1
,
CRTISO
and
LCYB
genes showed higher expression levels in diploid than in polyploid fruit. In Mimei, the negative correlation between gibberellane (GA) content and lycopene accumulation was determined in all three different ploidy fruits, while a positive correlation was observed between abscisic acid (ABA) content and lycopene accumulation only in diploid watermelon. These results indicated that different lycopene contents in different ploidy watermelons is regulated by the differential transcription expression of the lycopene metabolic genes and phytohormones.
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Detection of Thrips Defect on Green-Peel Citrus Using Hyperspectral Imaging Technology Combining PCA and B-Spline Lighting Correction Method
DONG Chun-wang, YE Yang, ZHANG Jian-qiang, ZHU Hong-kai , LIU Fei
2014, 13 (
10
): 2229-2235. DOI:
10.1016/S2095-3119(13)60671-1
Abstract
(
1314
)
PDF in ScienceDirect
In order to find an effective method of detecting thrips defect on green-peel citrus, a defect segmentation method was developed using a single threshold value based on combination of characteristic wavelengths principal component analysis (PCA) and B-spline lighting correction method in this study. At first, four characteristic wavelengths (523, 587, 700 and 768 nm) were obtained using PCA of Vis-NIR (visible and near-infrared) bands and analysis of weighting coefficients; secondarily, PCA was performed using characteristic wavelengths and the second principal component (PC2) was selected to classify images; then, B-spline lighting correction method was proposed to overcome the influence of lighting non-uniform on citrus when thrips defect was segmented; finally, thrips defect on citrus was extracted by global threshold segmentation and morphological image processing. The experimental results show that thrips defect in citrus can be detected with an accuracy of 96.5% by characteristic wavelengths PCA and B-spline lighting correction method. This study shows that thrips defect on green-peel citrus can be effectively identified using hyperspectral imaging technology.
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