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QTL analysis of early flowering of female flowers in zucchini (Cucurbita pepo L.)
QU Shu-ping, YANG Dan, YU Hai-yang, CHEN Fang-yuan, WANG Ke-xin, DING Wen-qi, XU Wen-long, WANG Yun-li
2023, 22 (11): 3321-3330.   DOI: 10.1016/j.jia.2022.09.009
Abstract188)      PDF in ScienceDirect      

Early flowering promotes early maturity, production, and the capacity to counteract biotic and abiotic stresses, making it an important agronomic trait in zucchini.  The present study demonstrated that the zucchini inbred line ‘19’ consistently flowered early, taking significantly fewer days to bloom the first female flower (DFF) than the inbred line ‘113’.  Genetic analysis revealed that DFF, an inheritable quantitative trait, is controlled by multiple genes.  Based on the strategy of quantitative trait locus (QTL) sequencing (QTL-seq) combined with linkage analysis, three QTLs for DFF were identified on chromosomes 4, 11, and 20.  This study used additional F2 populations grown under different environmental conditions for QTL mapping analysis of DFF with insertion/deletion (InDel) markers to validate these results.  Using the composite interval mapping (CIM) method of R/qtl software, we only identified one major locus under all environmental conditions, located in a 117-kb candidate region on chromosome 20.  Based on gene annotation, gene sequence alignment, and qRT-PCR analysis, we found that the Cp4.1LG20g08050 gene encoding a RING finger protein may be a candidate gene for the opposite regulation of early flowering in zucchini.  In summary, these results lay a foundation for a better understanding of early flowering and improving early flowering-based breeding strategies in zucchini.

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Genetic diversity and population structure of Commelina communis in China based on simple sequence repeat markers
YANG Juan, YU Hai-yan, LI Xiang-ju, DONG Jin-gao
2018, 17 (10): 2292-2301.   DOI: 10.1016/S2095-3119(18)61906-9
Abstract394)      PDF in ScienceDirect      
Commelina communis (Asiatic dayflower) is a troublesome weed in China.  Genetic variation of 46 C. communis populations from different collection sites in our country was investigated using 12 simple sequence repeat (SSR) primer pairs.  Polymorphism analysis results showed high level of genetic diversity among these populations.  The alleles (bands) were amplified by these primer pairs.  The polymorphic proportion was 18.25%, and the average polymorphism information content was 0.1330.  The highest effective number of alleles was 1.9915 at locus YP33, and the lowest value was 1.0000 at both loci YP25 and YP31.  C. communis showed major average observed heterozygosity value (0.8655) than that of average expected heterozygosity (0.1330).  C. communis populations were divided into three groups on the basis of unweighted pair-group method with arithmetic mean cluster analysis (Dice genetic similarity coefficient=0.772) and genetic structure analysis (K=3), and a principal coordinate analysis.  The results of this study further illustrated that C. communis populations contained abundant genetic information, and the 12 SSR markers could detect the microsatellite loci of C. communis genomic DNA.  These results might indicate that C. communis maintains high genetic diversity among different populations.
 
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