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Genome-wide identification and expression analysis of GDSL esterase/lipase genes in tomato
SUN Yao-guang, HE Yu-qing, WANG He-xuan, JIANG Jing-bin, YANG Huan-huan, XU Xiang-yang
2022, 21 (
2
): 389-406. DOI:
10.1016/S2095-3119(20)63461-X
Abstract
(
480
)
PDF in ScienceDirect
The GDSL esterase/lipase family contains many functional genes that perform important biological functions in growth and development, morphogenesis, seed oil synthesis, and defense responses in plants. The expression of GDSL esterase/lipase genes can respond to biotic and abiotic stresses. Although GDSL esterase/lipase family genes have been identified and studied in other plants, they have not been identified and their functions remain unclear in tomato. This study is the first to identify 80 GDSL esterase/lipase family genes in tomato, which were named SlGELP
1–80
. These genes were mapped to their positions on the chromosomes and their physical and chemical properties, gene structure, phylogenetic relationships, collinear relationships, and
cis
-acting elements were analyzed. The spatiotemporal expression characteristics of the
SlGELP
genes in tomato were diverse. In addition, RNA-seq analysis indicated that the expression patterns of the
SlGELP
genes in tomato differed before and after inoculation with Stemphylium lycopersici. qRT-PCR was used to analyze the expression of five
SlGELP
genes after treatments with
S. lycopersici
, salicylic acid and jasmonic acid. Finally, this study was the first to identify and analyze GDSL esterase/lipase family genes in tomato
via
bioinformatics approaches, and these findings provide new insights for improving the study of plant disease resistance.
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Silencing the SLB3 transcription factor gene decreases drought stress tolerance in tomato
WANG Zi-yu, bAO Yu-fang, PEI Tong, WU Tai-ru, DU Xu, HE Meng-xi, WANG Yue, LIU Qi-feng, YANG Huan-huan, JIANG Jing-bin, ZHANG He, LI Jing-fu, ZHAO Ting-ting, XU Xiang-yang
2020, 19 (
11
): 2699-2708. DOI:
10.1016/S2095-3119(20)63350-0
Abstract
(
128
)
PDF in ScienceDirect
BRI1-EMS-SUPPRESSOR 1 (BES1) transcription factor is closely associated with the brassinosteroid (BR) signaling pathway and plays an important role in plant growth and development.
SLB3
is a member of BES1 transcription factor family and its expression was previously shown to increase significantly in tomato seedlings under drought stress. In the present study,we used virus-induced gene silencing (VIGS) technology to downregulate
SLB3
expression to reveal the function of the
SLB3
gene under drought stress further. The downregulated expression of
SLB3
weakened the drought tolerance of the plants appeared earlier wilting and higher accumulation of H
2
O
2
and O
2
–
·, decreased superoxide dismutase (SOD) activity, and increased proline (PRO) and malondialdehyde (MDA) contents and peroxidase (POD) activity. Quantitative real-time PCR (qRT-PCR) analysis of BR-related genes revealed that the expression of
SlCPD
,
SlDWARF
and BIN2-related genes was significantly upregulated in
SLB3
-silenced seedlings under drought stress, but that the expression of TCH4-related genes was downregulated. These results showed that silencing the
SLB3
gene reduced the drought resistance of tomato plants and had an impact on the BR signaling transduction which may be probably responsible for the variation in drought resistance of the tomato plants.
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Downregulation of
SL-ZH13
transcription factor gene expression decreases drought tolerance of tomato
ZHAO Ting-ting, WANG Zi-yu, BAO Yu-fang, ZHANG Xiao-chun, YANG Huan-huan, ZHANG Dong-ye, JIANG Jing-bin, ZHANG He, LI Jing-fu, CHEN Qing-shan, XU Xiang-yang
2019, 18 (
7
): 1579-1586. DOI:
10.1016/S2095-3119(19)62621-3
Abstract
(
293
)
PDF in ScienceDirect
Zinc finger-homeodomain proteins (ZF-HDs) are transcription factors that regulate plant growth, development, and abiotic stress tolerance. The SL-ZH13 gene was found to be significantly upregulated under drought stress treatment in tomato (
Solanum lycopersicum
) leaves in our previous study. In this study, to further understand the role that the
SL-ZH13
gene plays in the response of tomato plants to drought stress, the virus-induced gene silencing (VIGS) method was applied to downregulate
SL-ZH13
expression in tomato plants, and these plants were treated with drought stress to analyze the changes in drought tolerance. The
SL-ZH13
silencing efficiency was confirmed by quantitative real-time PCR (qRT-PCR) analysis. In
SL-ZH13
-silenced plants, the stems wilted faster, leaf shrinkage was more severe than in control plants under the same drought stress treatment conditions, anyd the mean stem bending angle of
SL-ZH13
-silenced plants was smaller than that of control plants. Physiological analyses showed that the activity of superoxide dismutase (SOD) and peroxidase (POD) and the content of proline (Pro) in
SL-ZH13
-silenced plants were lower than those in control plants after 1.5 and 3 h of drought stress treatment. The malondialdehyde (MDA) content in
SL-ZH13
-silenced plants was higher than that in control plants after 1.5 and 3 h of drought stress treatment, and H
2
O
2
and O
2
-
· accumulated much more in the leaves of
SL-ZH13
-silenced plants than in the leaves of control plants. These results suggested that silencing the
SL-ZH13
gene affected the response of tomato plants to drought stress and decreased the drought tolerance of tomato plants.
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