导航切换
Journal of Integrative Agriculture
JIA Home
About JIA
Description
Video introduction
Editor-in-chief
Editorial board
Guideline of JIA editorial board
Editorial board
Youth Editorial Board
For authors
Instruction for authors
Title page
Copyright agreement
Templates
Endnote
Subscription
Contact
Journals
Publication Years
Keywords
Search within results
(((SUN Qi-xin[Author]) AND 1[Journal]) AND year[Order])
AND
OR
NOT
Title
Author
Institution
Keyword
Abstract
PACS
DOI
Please wait a minute...
For Selected:
Download Citations
EndNote
Ris
BibTeX
Toggle Thumbnails
Select
Genome-wide identification and transcriptome profiling reveal great expansion of SWEET gene family and their wide-spread responses to abiotic stress in wheat (
Triticum aestivum
L.)
QIN Jin-xia, JIANG Yu-jie, LU Yun-ze, ZHAO Peng, WU Bing-jin, LI Hong-xia, WANG Yu, XU Sheng-bao, SUN Qi-xin, LIU Zhen-shan
2020, 19 (
7
): 1704-1720. DOI:
10.1016/S2095-3119(19)62761-9
Abstract
(
193
)
PDF in ScienceDirect
The
S
ugars
W
ill
E
ventually be
E
xported
T
ransporter (SWEET) gene family, identified as sugar transporters, has been demonstrated to play key roles in phloem loading, grain filling, pollen nutrition, and plant-pathogen interactions. To date, the study of SWEET genes in response to abiotic stress is very limited. In this study, we performed a genome-wide identification of the SWEET gene family in wheat and examined their expression profiles under mutiple abiotic stresses. We identified a total of 105 wheat SWEET genes, and phylogenic analysis revealed that they fall into five clades, with clade V specific to wheat and its closely related species. Of the 105 wheat SWEET genes, 59% exhibited significant expression changes after stress treatments, including drought, heat, heat combined with drought, and salt stresses, and more up-regulated genes were found in response to drought and salt stresses. Further hierarchical clustering analysis revealed that SWEET genes exhibited differential expression patterns in response to different stress treatments or in different wheat cultivars. Moreover, different phylogenetic clades also showed distinct response to abiotic stress treatments. Finally, we found that homoeologous SWEET genes from different wheat subgenomes exhibited differential expression patterns in response to different abiotic stress treatments. The genome-wide analysis revealed the great expansion of SWEET gene family in wheat and their wide participation in abiotic stress response. The expression partitioning of SWEET homoeologs under abiotic stress conditions may confer greater flexibility for hexaploid wheat to adapt to ever changing environments.
Reference
|
Related Articles
|
Metrics
Select
A genetic linkage map with 178 SSR and 1 901 SNP markers constructed using a RIL population in wheat (Triticum aestivum L.)
ZHAI Hui-jie, FENG Zhi-yu, LIU Xin-ye, CHENG Xue-jiao, PENG Hui-ru, YAO Ying-yin, SUN Qi-xin, NI Zhong-fu
2015, 14 (
9
): 1697-1705. DOI:
10.1016/S2095-3119(14)60902-3
Abstract
(
1693
)
PDF in ScienceDirect
The construction of high density genetic linkage map provides a powerful tool to detect and map quantitative trait loci (QTLs) controlling agronomically important traits. In this study, simple sequence repeat (SSR) markers and Illumina 9K iSelect single nucleotide polymorphism (SNP) genechip were employed to construct one genetic linkage map of common wheat (Triticum aestivum L.) using 191 recombinant inbred lines (RILs) derived from cross Yu 8679×Jing 411. This map included 1 901 SNP loci and 178 SSR loci, covering 1 659.9 cM and 1 000 marker bins, with an average interval distance of 1.66 cM. A, B and D genomes covered 719.1, 703.5 and 237.3 cM, with an average interval distance of 1.66, 1.45 and 2.9 cM, respectively. Notably, the genetic linkage map covered 20 chromosomes, with the exception of chromosome 5D. Bioinformatics analysis revealed that 1 754 (92.27%) of 1 901 mapped SNP loci could be aligned to 1 215 distinct wheat unigenes, among which 1 184 (97.4%) were located on one single chromosome, and the rest 31 (2.6%) were located on 2 to 3 chromosomes. By performing in silico comparison, 214 chromosome deletion bin-mapped expressed sequence tags (ESTs), 1 043 Brachypodium genes and 1 033 rice genes were further added onto the genetic linkage map. This map not only integrated genetic and physical maps, SSR and SNP loci, respectively, but also provided the information of Brachypodium and rice genes corresponding to 1 754 SNP loci. Therefore, it will be a useful tool for comparative genomics analysis, fine mapping of QTL/gene controlling agronomically important traits and marker-assisted selection breeding in wheat.
Reference
|
Related Articles
|
Metrics
Select
Editorial for the special issue on food safety in China
Kevin Chen、Shu Geng、HUANG Ji-kun、LUO Yun-bo、SUN Qi-xin
2015, 14 (
11
): 2135-2135. DOI:
10.1016/S2095-3119(15)61187-X
Abstract
(
1719
)
PDF in ScienceDirect
Related Articles
|
Metrics
Select
Proteomic Identification of Rhythmic Proteins in Maize Seedling Leaves
FENG Wan-jun, GUO Bao-jian, YAO Ying-yin, PENGHui-ru , SUN Qi-xin, NI Zhong-fu
2012, 12 (
12
): 1958-1967. DOI:
10.1016/S1671-2927(00)8732
Abstract
(
1317
)
PDF in ScienceDirect
Plant leaves respond to day/night cycling in a number of physiological ways. At the mRNA level, the expression of some genes changes during the 24 h period. To determine which proteins exhibited a rhythmic pattern of expression, proteomic profiles in maize seedling leaves were analyzed by high-throughput two-dimensional gel electrophoresis, combined with MALDI-TOF MS technology. Of the 464 proteins that were detected with silver staining in a pH range of 4-7, 17 (3.66%) showed clock rhythmicity in their abundance. These proteins belonged to diverse functional groups and proteins involved in photosynthesis and carbon metabolism were over-represented. These findings provide a new perspective on the relationship between the physiological functions of leaves and the clock rhythmic system.
Reference
|
Related Articles
|
Metrics
Select
The Relationship Between Chinese Raw Dumpling Quality and Flour Characteristics of Shandong Winter Wheat Cultivars
ZHANG Yan, YE Yi-li, LIU Jian-jun, XIAO Yong-gui, SUN Qi-xin , HE Zhong-hu
2011, 10 (
11
): 1792-1800. DOI:
10.1016/S1671-2927(11)60179-X
Abstract
(
2193
)
PDF in ScienceDirect
Dumpling is one of the most important traditional wheat products in China. Dumpling quality is determined by the characteristics of both flour and filling, thus improvement of flour quality plays an important role in improving dumpling quality. Thirty-nine Shandong winter wheat cultivars and advanced lines sown in Jinan, Shandong Province, China, in the 2008-2009 cropping season were used to determine genetic variation in Chinese raw dumpling quality and its relationship with flour characteristics. Large variations were observed for protein quality parameters in comparison with starch properties. Variation in color of the raw dumpling sheet was broader than that of sensory evaluation parameters of boiled dumpling among tested wheat cultivars, indicating the large influence of filling on dumpling color. Two cultivars, Jimai 20 and Zimai 12, were identified as possessing very good quality of raw dumpling, and 21 cultivars and advanced lines showed good quality. Protein and total starch content influenced the L* value of raw dumpling sheets. L* value at 0 and 2 h after sheeting were significantly influenced by protein content (r=-0.46 and -0.52, P<0.01) and total starch content (r=0.55 and 0.57, P<0.01), respectively. Flour yellow pigment was significantly corrected with a* (r=-0.67 and -0.62, P<0.01) and b* (r=0.87 and 0.84, P<0.01) value of raw dumpling sheets at 0 and 2 h after sheeting, respectively. Gluten strength parameters such as farinograph mixing tolerance index (MTI, r=-0.55, P<0.01) were positively associated with appearance. MTI and energy were also significantly and positively correlated with elasticity of raw dumpling, with r=-0.54 and 0.47 (P<0.01). The positive relationships between peak viscosity (r=0.51, P<0.01), breakdown (r=0.54, P<0.01), and smoothness of raw dumpling were also observed. Therefore, it is suggested that breeding programs should give more attention to gluten strength and starch pasting parameters for raw dumpling quality improvement.
Reference
|
Related Articles
|
Metrics