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Journal of Integrative Agriculture
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Dynamic changes of root proteome reveal diverse responsive proteins in maize subjected to cadmium stress
REN Wen, LIU Ya, ZHOU Miao-yi, SHI Zi, WANG Tian-yu, ZHAO Jiu-ran, LI Yu
2019, 18 (
10
): 2193-2204. DOI:
10.1016/S2095-3119(18)62140-9
Abstract
(
109
)
PDF in ScienceDirect
Toxic symptoms and tolerance mechanisms of heavy metal in maize are well documented. However, limited information is available regarding the changes in the proteome of maize seedling roots in response to cadmium (Cd) stress. Here, we employed an iTRAQ-based quantitative proteomic approach to characterize the dynamic alterations in the root proteome during early developmental in maize seedling. We conducted our proteomic experiments in three-day seedling subjected to Cd stress, using roots in four time points. We identified a total of 733, 307, 499, and 576 differentially abundant proteins after 12, 24, 48, or 72 h of treatment, respectively. These proteins displayed different functions, such as ribosomal synthesis, reactive oxygen species homeostasis, cell wall organization, cellular metabolism, and carbohydrate and energy metabolism. Of the 166 and 177 proteins with higher and lower abundance identified in at least two time points, 14 were common for three time points. We selected nine proteins to verify their expression using quantitative real-time PCR. Proteins involved in the ribosome pathway were especially responsive to Cd stress. Functional characterization of the proteins and the pathways identified in this study could help our understanding of the complicated molecular mechanism involved in Cd stress responses and create a list of candidate gene responsible for Cd tolerance in maize seeding roots.
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Identification of salinity-related genes in
ENO2
mutant (
eno2
–
) of
Arabidopsis thaliana
ZHANG Yong-hua, CHEN Chao, SHI Zi-han, CHENG Hui-mei, BING Jie, MA Xiao-feng, ZHENG Chao-xing, LI Hong-jie, ZHANG Gen-fa
2018, 17 (
01
): 94-110. DOI:
10.1016/S2095-3119(17)61720-9
Abstract
(
668
)
PDF in ScienceDirect
Abiotic stress poses a great threat to plant growth and can lead to huge losses in yield. Gene
enolase2
(
ENO2
) is important in resistance to abiotic stress in various organisms.
ENO2
T-DNA insertion mutant (
eno2
–
) plants of Arabidopsis thaliana showed complete susceptibility to sodium chloride treatment when were analyzed either as whole plants or by measuring root growth during NaCl treatment. Quantitative real-time RT-PCR (RT-qPCR) was performed to investigate the expression profile of
ENO2
in response to NaCl stress in Arabidopsis. The transcript level of
ENO2
was rapidly elevated in 300 mmol L
–1
NaCl treatment. ENO2 also responded to 300 mmol L
–1
NaCl treatment at the protein level. To illuminate the mechanism underlying
ENO2
resistance to salt at the transcriptional level, we studied the wild-type and eno2
–
Arabidopsis
lines that were treated with 300 mmol L
–1
NaCl for 18 h using 454 GS FLX, which resulted in an expressed sequence tag (EST) dataset. A total of 961 up-regulated and 746 down-regulated differentially expressed genes (DEGs) were identified in the pairwise comparison WT-18 h:
eno2
–
-18 h. The DEGs were identified and functionally annotated using the databases of Gene Ontology (GO) and the Kyoto encyclopedia of genes and genomes (KEGG). The identified unigenes were subjected to GO analysis to determine biological, molecular, and cellular functions. The biological process was enriched in a total of 20 GO terms, the cellular component was enriched in 13 GO terms, and the molecular function was enriched in 11 GO terms. Using KEGG mapping, DEGs with pathway annotations contributed to 115 pathways. The top 3 pathways based on a statistical analysis were biosynthesis of the secondary metabolites (KO01110), plant-pathogen interactions (KO04626), and plant hormone signal transduction (KO04075). Based on these results,
ENO2
contributes to increased resistance to abiotic stress. In particular,
ENO2
is involved in some of the metabolic stress response pathways in
Arabidopsis
. Our work also demonstrates that this EST dataset will be a powerful resource for further studies of
ENO2
, such as functional analyses, investigations of biological roles, and molecular breeding. Additionally, 3-phosphoglycerate kinase (PGK), 3-phosphoglycerate kinase 1 (PGK1), triosephosphate isomerase (TPI), and pyruvate kinase (PK) in glycolysis interactions with
ENO2
were verified using the yeast two-hybrid experiment, and
ENO2
may regulate the expression of
PGK
,
PGK1
,
TPI
, and
PK
. Taken together, the results from this study reflects that
ENO2
gene has an important role in the response to the high salt stress.
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Exploring differentially expressed genes associated with fertility instability of S-type cytoplasmic male-sterility in maize by RNA-seq
SU Ai-guo*, SONG Wei*, SHI Zi, ZHAO Yan-xin, XING Jin-feng, ZHANG Ru-yang, LI Chun-hui, LUO Mei-jie, WANG Ji-dong, ZHAO Jiu-ran
2017, 16 (
08
): 1689-1699. DOI:
10.1016/S2095-3119(16)61494-6
Abstract
(
952
)
PDF in ScienceDirect
The germplasm resources for the S-type male sterility is rich in maize and it is resistant to Bipolaris maydis race T and CI, but the commercial application of S-type cytoplasmic male sterility (CMS-S) in maize hybrid industry is greatly compromised because of its common fertility instability. Currently, the existence of multiple minor effect loci in specific nuclear genetic backgrounds was considered as the molecular mechanism for this phenomenon. In the present study, we evaluated the fertility segregation of the different populations with the fertility instable material FIL-H in two environments of Beijing and Hainan, China. Our results indicated that the fertility instability of FIL-H was regulated by multiple genes, and the expression of these genes was sensitive to environmental factors. Using RNA sequencing (RNA-seq) technology, transcriptomes of the sterile plants and partially fertile plants resulted from the backcross of FIL-H×Jing 724 in Hainan were analyzed and 2 108 genes with different expression were identified, including 1 951 up-regulated and 157 down-regulated genes. The cluster analysis indicated that these differentially expressed genes (DEGs) might play roles in many biological processes, such as the energy production and conversion, carbohydrate metabolism and signal transduction. In addition, the pathway of the starch and sucrose metabolism was emphatically investigated to reveal the DEGs during the process of starch biosynthesis between sterile and partially fertile plants, which were related to the key catalytic enzymes, such as ADP-G pyrophosphorylase, starch synthase and starch branching enzyme. The up-regulation of these genes in the partially fertile plant may promote the starch accumulation in its pollen. Our data provide the important theoretical basis for the further exploration of the molecular mechanism for the fertility instability in CMS-S maize.
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Over-Expression of ScMnSOD, a SOD Gene Derived from Jojoba, Improve Drought Tolerance in Arabidopsis
LIU Xiao-fei, SUN Wei-min, LI Ze-qin, BAI Rui-xue, LI Jing-xiao, SHI Zi-han, GENG Hongwei, ZHENG Ying, ZHANG Jun , ZHANG Gen-fa
2013, 12 (
10
): 1722-1730. DOI:
10.1016/S2095-3119(13)60404-9
Abstract
(
1278
)
PDF in ScienceDirect
Jojoba (Simmondsia chinensis) is mainly distributed in desert, and the molecular mechanisms of jojoba in response to abiotic stress still remain elusive. In this paper, we cloned and characterized a SOD gene from jojoba named as ScMnSOD, and introduced into Arabidopsis to investigate its functions of responding to drought stress. The transgenic Arabidopsis showed an improvement in drought tolerance. Moreover, under a water deficit condition, the accumulation of reactive oxygen species (ROS) was remarkably decreased in the transgenic lines compared to the WT. Furthermore, the ScMnSOD promoter was cloned to the 5´-upstream of GUS coding region in a binary vector, and introduced into Arabidopsis. And results showed that ScMnSOD expression can be induced by drought, salt, ABA, and low temperature. In conclusion, ScMnSOD plays an important role in drought tolerance which is, at least partially, attributed to its role in ROS detoxification.
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