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Methyl donor micronutrients orchestrate lipid metabolism: The role of DNA methylation modification
Li Han, Qiyu Tian, Qi Han, Yulong Yin, Jie Yin, Xingguo Huang
2026, 25 (4): 1343-1358.   DOI: 10.1016/j.jia.2024.11.001
Abstract97)      PDF in ScienceDirect      

DNA methylation, a key epigenetic modification, plays a crucial role in regulating lipid metabolism.  Consistent correlations have been observed between aberrant DNA methylation patterns and lipid metabolic disorders.  Emerging evidence indicates that methyl donor micronutrients could influence DNA methylation patterns, consequently exerting an influence on lipid metabolism.  Specifically, the deficiency or excesses of methyl donor micronutrients (folate, choline, betaine, B vitamins and methionine) have been associated with altered DNA methylation patterns linked to lipid metabolism.  These alteration in DNA methylation levels, occurring globally and within promoter regions, could affect gene expression related to lipid metabolism.  However, the mechanisms through which methyl donor micronutrients regulate lipid metabolism via the DNA methylation modification and the role of methyl donor micronutrients supplementation on DNA methylation profiles remain unclear.  In this review, we summarized the regulatory role of DNA methylation in lipid metabolism, and highlighted recent findings investigating the impact of methyl donor micronutrients on lipid metabolism, as well as DNA methylation-mediated adipogenesis and adipose deposition.  Taken together, this review deepened our understanding of how the complex interplay between methyl donor micronutrients, DNA methylation, and lipid metabolism, and provides valuable information for accurately regulating lipid metabolism of livestock and poultry, thereby improving meat quality, and promoting the development of animal husbandry.

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The VGLL2 gene participates in muscle development in Gushi chickens
Wenya Li, Haoxiang Ma, Yanxing Wang, Yushi Zhang, Yang Liu, Ruili Han, Hong Li, Hanfang Cai, Xiaojun Liu, Xiangtao Kang, Ruirui Jiang, Zhuanjian Li
2025, 24 (1): 246-260.   DOI: 10.1016/j.jia.2023.06.017
Abstract387)      PDF in ScienceDirect      
Previous studies have shown that VGLL2, a member of the mammalian Vestigial-like (VGLL) family, plays important roles in the growth and development of animal skeletal muscle, but its specific role in the development of chicken skeletal muscle is unclear.  The main goal of this study was to explore the biological functions of VGLL2 in the development of chicken skeletal muscle and the proliferation and differentiation of skeletal muscle cells in vitro.  In this study, we detected the effect of VGLL2 on the proliferation of myoblasts by CCK8, EdU and flow cytometry analyses after overexpressing and interfering with VGLL2.  Indirect immunofluorescence was used to detect the effect of VGLL2 on the differentiation of myoblasts.  qRT-PCR and hematoxylin and eosin (H&E) staining were used to evaluate the effects of VGLL2 overexpression on the growth rate and muscle fiber structure of chicken skeletal muscle.  The results showed that VGLL2 inhibited the proliferation of primary cultured chicken myoblasts and promoted the differentiation of these cells.  Interestingly, food intake and muscle fiber development were significantly enhanced by the overexpression of VGLL2 in chickens.  Taken together, these data demonstrate that the VGLL2 gene may be a useful marker for improving muscle mass in poultry.
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Using transcriptome Shannon entropy to evaluate the off-target effects and safety of insecticidal siRNAs
MA Wei-hua, WU Tong, ZHANG Zan, LI Hang, SITU Gong-ming, YIN Chuan-lin, YE Xin-hai, CHEN Meng-yao, ZHAO Xian-xin, HE Kang, LI Fei
2022, 21 (1): 170-177.   DOI: 10.1016/S2095-3119(20)63394-9
Abstract317)      PDF in ScienceDirect      
A recent breakthrough in agricultural biotechnology is the introduction of RNAi-mediated strategies in pest control.  However, the off-target effects of RNAi pest control are still not fully understood.  Here, we studied the off-target effects of two insecticidal siRNAs in both target and non-target insects.  The results revealed that off-target effects of insecticidal siRNAs occur widely in both target and non-target insects.  We classified the expression-changed genes according to their homology to the siRNA-targeted gene, related KEGG pathways with the siRNA-targeted gene and continuous matches with siRNAs.  Surprisingly, the unintended significant changes in gene expression levels did not strictly match with the number of contiguous nucleotides in the siRNAs.  As expected, the expression of small portions of the homologous and KEGG-related genes were significantly changed.  We calculated the Shannon entropy of the transcriptome profile of the insects after injecting them with insecticidal siRNAs.  Though hundreds of genes were affected in their expression levels post siRNA-treatment, the Shannon entropy of the transcriptome remained unchanged, suggesting that the transcriptome expression was balanced.  Our results provide evidence that siRNAs cross-reacted with individual genes in non-target species, but did not have significant effects on the integrity of the transcriptome profiles in either target or non-target species on a genomic scale.  The metric we proposed can be used to estimate the off-target effects of insecticidal siRNAs, which might be useful for evaluating the safety of RNAi in pest control.  
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