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Identification of genetic loci for grain yield‑related traits in the wheat population Zhongmai 578/Jimai 22
LIU Dan, ZHAO De-hui, ZENG Jian-qi, Rabiu Sani SHAWAI, TONG Jing-yang, LI Ming, LI Fa-ji, ZHOU Shuo, HU Wen-li, XIA Xian-chun, TIAN Yu-bing, ZHU Qian, WANG Chun-ping, WANG De-sen, HE Zhong-hu, LIU Jin-dong, ZHANG Yong
2023, 22 (7): 1985-1999.   DOI: 10.1016/j.jia.2022.12.002
Abstract301)      PDF in ScienceDirect      
The identification of stable quantitative trait locus (QTL) for yield-related traits and tightly linked molecular markers is important for improving wheat grain yield. In the present study, six yield-related traits in a recombinant inbred line (RIL) population derived from the Zhongmai 578/Jimai 22 cross were phenotyped in five environments. The parents and 262 RILs were genotyped using the wheat 50K single nucleotide polymorphism (SNP) array. A high-density genetic map was constructed with 1 501 non-redundant bin markers, spanning 2 384.95 cM. Fifty-three QTLs for six yield-related traits were mapped on chromosomes 1D (2), 2A (9), 2B (6), 2D, 3A (2), 3B (2), 4A (5), 4D, 5B (8), 5D (2), 7A (7), 7B (3) and 7D (5), which explained 2.7–25.5% of the phenotypic variances. Among the 53 QTLs, 23 were detected in at least three environments, including seven for thousand-kernel weight (TKW), four for kernel length (KL), four for kernel width (KW), three for average grain filling rate (GFR), one for kernel number per spike (KNS) and four for plant height (PH). The stable QTLs QKl.caas-2A.1, QKl.caas-7D, QKw.caas-7D, QGfr.caas-2B.1, QGfr.caas-4A, QGfr.caas-7A and QPh. caas-2A.1 are likely to be new loci. Six QTL-rich regions on 2A, 2B, 4A, 5B, 7A and 7D, showed pleiotropic effects on various yield traits. TaSus2-2B and WAPO-A1 are potential candidate genes for the pleiotropic regions on 2B and 7A, respectively. The pleiotropic QTL on 7D for TKW, KL, KW and PH was verified in a natural population. The results of this study enrich our knowledge of the genetic basis underlying yield-related traits and provide molecular markers for high-yield wheat breeding.
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Characterization of TaCOMT genes associated with stem lignin content in common wheat and development of a gene-specific marker
FU Lu-ping, XIAO Yong-gui, YAN Jun, LIU Jin-dong, WEN Wei-e, ZHANG Yong, XIA Xian-chun, HE Zhong-hu
2019, 18 (5): 939-947.   DOI: 10.1016/S2095-3119(18)61958-6
Abstract949)      PDF in ScienceDirect      
Stem lignin content (SLC) in common wheat (Triticum aestivum L.) contributes to lodging resistance.  Caffeic acid 3-O-methyltransferase (COMT) is a key enzyme involved in lignin biosynthesis.  Characterization of TaCOMT genes and development of gene-specific markers could enable marker-assisted selection in wheat breeding.  In the present study, the full-length genomic DNA (gDNA) sequences of TaCOMT genes located on chromosomes 3A, 3B, and 3D were cloned by homologous cloning.  Two allelic variants, TaCOMT-3Ba and TaCOMT-3Bb, were identified and differed by a 222-bp insertion/deletion (InDel) in the 3´-untranslated region (3´-UTR).  A co-dominant gene-specific marker based on this InDel was developed and designated as TaCOMT-3BM.  A total of 157 wheat cultivars and advanced lines grown in four environments were used to validate the associations between allelic patterns and SLC.  The SLC of cultivars with TaCOMT-3Ba was significantly (P<0.01) higher than that of those with TaCOMT-3Bb, and the marker TaCOMT-3BM could be effectively used in wheat breeding.
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