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An improved scheme for infectious bursal disease virus genotype classification based on both genome-segments A and B
WANG Yu-long, FAN Lin-jin, JIANG Nan, GAO Li, LI Kai, GAO Yu-long, LIU Chang-jun, CUI Hong-yu, PAN Qing, ZHANG Yan-ping, WANG Xiao-mei, QI Xiao-le
2021, 20 (5): 1372-1381.   DOI: 10.1016/S2095-3119(20)63424-4
Abstract141)      PDF in ScienceDirect      
Infectious bursal disease (IBD) is caused by infectious bursal disease virus (IBDV), which has a genome consisting of two segments of double-stranded linear RNA.  IBDVs have been traditionally divided into four phenotypes based on their pathogenicity and antigenicity, including classic, variant, very virulent, and attenuated IBDV.  With the emergences of divergent molecular characteristics of novel strains produced by continuous mutations and recombination, it is increasingly difficult to define new IBDV strains using the traditional descriptive classification method.  The most common classification scheme for IBDV with segmented genome is based solely on segment A, while the significance of segment B has been largely neglected.  In this study, an improved scheme for IBDV genotype classification based on the molecular characteristics of both VP2 (a viral capsid protein encoded by segment A) and VP1 (an RNA-dependent RNA polymerase protein encoded by segment B) was proposed for the first time.  In this scheme, IBDV was classified into nine genogroups of A and five genogroups of B, respectively; the genogroup A2 was further divided into four lineages.  The commonly used phenotypic classifications of classic, variant, very virulent, and attenuated IBDVs correspond to the A1B1, A2B1, A3B2, and A8B1 genotypes of the proposed classification scheme.  The novel variant IBDVs including the strains identified in this study were classified as belonging to genotype A2dB1.  The flexibility and versatility of this improved classification scheme will allow the unambiguous identification of existing and emerging IBDV strains, which will greatly facilitate molecular epidemiology studies of IBDV.
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Analysis of DNA methylation of CD79B in MDV-infected chicken spleen
WANG Lu-lu, ZHAO Chun-fang, LIU Chang-jun, ZHANG Hao, LIAN Ling
2021, 20 (11): 2995-3002.   DOI: 10.1016/S2095-3119(20)63564-X
Abstract146)      PDF in ScienceDirect      
Marek’s disease (MD), an immunosuppressive disease induced by Marek’s disease virus (MDV), provides an ideal model for studying diseases caused by a carcinogenic virus.  CD79B is a B-cell antigen receptor complex-associated protein β-chain precursor which is involved in the activation, proliferation, differentiation of B-cell and the transmission of downstream signals.  This study analyzed CD79B gene mRNA expression and methylation by two schemes #20 (5´ flanking to intron 1) and #27 (intron 2 to intron 3), between MDV-infected tumorous spleens (TS) and non-infected spleens (NS).  Results showed that average methylation levels of CpGs in #20 and #27 were higher in TS than in NS (P<0.05), while, CD79B mRNA expression was lower in TS than in NS (P<0.01).  Six of 40 CpG sites showed significantly (P<0.05) different methylation levels between TS and NS.  Correlation analysis showed that the average methylation level rather than a single site methylation level in #20 affected (P<0.05) mRNA expression.  Collectively, it was found that the change of CD79B gene expression after MDV infection might be partly explained by modification of DNA methylation. 
 
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The circulation of unique reassortment strains of infectious bursal disease virus in Pakistan
Altaf HUSSAIN, WU Tian-tian, FAN Lin-jin, WANG Yu-long, Farooq Khalid MUHAMMAD, JIANG Nan, GAO Li, LI Kai, GAO Yu-long, LIU Chang-jun, CUI Hong-yu, PAN Qing, ZHANG Yan-ping, Asim ASLAM, Khan MUTI-UR-REHMAN, Muhammad Imran ARSHAD, Hafiz Muhammad ABDULLAH, WANG Xiao-mei, QI Xiao-le
2020, 19 (7): 1867-1875.   DOI: 10.1016/S2095-3119(20)63183-5
Abstract177)      PDF in ScienceDirect      
Infectious bursal disease (IBD), caused by IBD virus (IBDV), is one of the most devastating and immunosuppressive diseases of the poultry and has been a constraint on the sustainable poultry production around the globe including Pakistan.  While the disease is threatening the poultry industry, the nature of predominant strains of IBDV in Pakistan remained ill-defined.  In this study, an epidemiology survey was conducted in the main chicken-farming regions of Pakistan.  The batch of Pakistan IBDVs genes simultaneously covering both VP1 and VP2 were amplified, sequenced, and analyzed.  The unique segment-reassortant IBDVs (vv-A/Uniq-B), carrying segment A from vvIBDV and segment B from one unique ancestor, were identified as one important type of circulating strains in Pakistan.  The data also discovered the characteristic molecular features of Pakistan IBDVs, which will contribute to scientific vaccine selection and effective prevention of the disease.
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Knockdown of the Meq gene in Marek’s disease tumor cell line MSB1 might induce cell apoptosis and inhibit cell proliferation and invasion
ZHAO Chun-fang, LI Xin, HAN Bo, QU Lu-jiang, LIU Chang-jun, Jiu Zhou SONG, YANG Ning, LIAN Ling
2020, 19 (11): 2767-2774.   DOI: 10.1016/S2095-3119(20)63321-4
Abstract129)      PDF in ScienceDirect      

Marek’s disease (MD), a highly cell-associated and contagious disease of chickens caused by Marek’s disease virus (MDV) can result in neural lesions, immunosuppression and neoplasia in chicken.  The Meq gene is an important oncogene in the MDV genome, and it is expressed highly in MD tumor tissues and MD T-lymphoblastoid cell lines.  An experiment was conducted to elucidate the role of Meq in MD tumor transformation.  RNA interference technology was used to block its expression, and then analyzed the biological effects of Meq knockdown on the MD tumor cell line MSB1.  A small interfering RNA with an interference efficiency of 70% (P<0.01) was transfected into MSB1 cells to knock down the expression of Meq gene.  The cell proliferation, cycle and apoptosis were detected post-Meq knockdown.  The results showed that MSB1 cell proliferation was downregulated remarkably at 48 h (P<0.01), 60 h (P<0.05) and 72 h (P<0.01) post-Meq knockdown.  The cell cycle was unaffected (P>0.05).  B-cell lymphoma 2 gene (BCL2) was anti-apoptotic and caspase-6 was the effector in the apoptosis pathway.  The activity of caspase-6 was upregulated (P<0.05) significantly and BCL2 gene expression was downregulated (P<0.05) significantly post-Meq knockdown, suggesting cell apoptosis might be induced.  MSB1 cell migration did not exhibit any obvious change (P>0.05) post-Meq knockdown, but the expression of two genes (matrix metalloproteinase 2 (MMP2) and MMP9) that are correlated closely to cell invasion was downregulated (P<0.05) remarkably post-Meq knockdown.  The Meq knockdown might affect the main features of tumorous cells, including proliferation, apoptosis, and invasion, suggesting that the Meq gene might play a crucial role in interfering with lymphomatous cell transformation.

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